Skip to main content
Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Feb 17;68(Pt 3):m297. doi: 10.1107/S1600536812005582

Chloridobis(1,2,3,4-tetra­hydro-1,4,6,11-tetra­aza­naphthacene-κN 6)copper(I)

Xing-Shun Chen a, Jing-Jing Zhang a, Tai-Ke Duan a, Qun Chen b, Qian-Feng Zhang a,b,*
PMCID: PMC3297250  PMID: 22412440

Abstract

In the title complex, [CuCl(C14H12N4)2], the CuI atom, lying on a twofold rotation axis, is coordinated by two N atoms of two 1,2,3,4-tetra­hydro-1,4,6,11-tetra­aza­naphthacene ligands and one Cl atom, also lying on the twofold rotation axis, in a distorted trigonal-planar geometry. The complex mol­ecules are connected into a one-dimensional structure along [001] via N—H⋯N hydrogen bonds and further into a three-dimensional structure via N—H⋯Cl hydrogen bonds. π–π inter­actions between the pyrazine and benzene rings and between the benzene rings [centroid–centroid distances = 3.5635 (15) and 3.9128 (16) Å] are present.

Related literature  

For transition metal complexes with heterocyclic ligands, see: Dai et al. (2007); Grove et al. (2000, 2001); Näther & Beck (2004); Xu et al. (2011). For a description of the Cambridge Structural Database, see: Allen (2002).graphic file with name e-68-0m297-scheme1.jpg

Experimental  

Crystal data  

  • [CuCl(C14H12N4)2]

  • M r = 571.54

  • Monoclinic, Inline graphic

  • a = 16.987 (4) Å

  • b = 11.606 (3) Å

  • c = 14.487 (4) Å

  • β = 118.492 (3)°

  • V = 2510 (1) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 1.01 mm−1

  • T = 296 K

  • 0.29 × 0.24 × 0.06 mm

Data collection  

  • Bruker APEX CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.758, T max = 0.942

  • 7571 measured reflections

  • 2839 independent reflections

  • 2476 reflections with I > 2σ(I)

  • R int = 0.032

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.036

  • wR(F 2) = 0.105

  • S = 1.03

  • 2839 reflections

  • 173 parameters

  • H-atom parameters constrained

  • Δρmax = 0.94 e Å−3

  • Δρmin = −0.34 e Å−3

Data collection: SMART (Bruker, 2007); cell refinement: SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812005582/hy2514sup1.cif

e-68-0m297-sup1.cif (16.6KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812005582/hy2514Isup2.hkl

e-68-0m297-Isup2.hkl (139.5KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N3—H3N⋯N2i 0.86 2.22 2.986 (2) 148
N4—H4N⋯Cl1ii 0.86 2.76 3.4952 (18) 145

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

This project was supported by the Program for New Century Excellent Talents in Universities of China (grant No. NCET-08–0618).

supplementary crystallographic information

Comment

The heterocyclic compounds involving aromatic system with condensed pyrazine, pyridine and piperidine rings have been shown to occur as a rigid bridge in transition metal complexes, which are expected to be good building blocks for creating coordination polymers due to the flexibility of the heterocyclic ligands (Grove et al., 2000, 2001). We have recently been studying the coordination chemistry of polyamines to transition metal halides (Dai et al., 2007, Xu et al., 2011). In the course of this work, we have synthesized the title copper(I) complex with a new 1,2,3,4-tetrahydro-1,4,6,11-tetraazanaphthacene ligand formed from the condensing reaction of phenazine and ethane-1,2-diamine under hydrothermal conditions. Here we report the crystal structure of the mononuclear copper(I) complex.

The molecular structure of the title complex is depicted in Fig. 1. The CuI atom, lying on a twofold rotation axis, is coordinated by two N atoms of two organic ligands and one Cl atom. The Cu—N bond length of 1.9927 (15) Å and the Cu—Cl bond length of 2.2229 (10) Å are in the range of those found in related structures retrieved from the Cambridge Structural Database (Allen, 2002). The N—Cu—N and N—Cu—Cl angles are 123.94 (9) and 118.03 (4)°. The Cu atom shows a distorted trigonal-planar coordination geometry (Näther & Beck, 2004). In the crystal, the discrete complex molecules are connected by N—H···N and N—H···Cl hydrogen bonds (Table 1) into a three-dimensional structure (Fig. 2). π–π interactions between the pyrazine and benzene rings and between the benzene rings [centroid–centroid distances = 3.5635 (15) and 3.9128 (16) Å] are present.

Experimental

CuCl (99 mg, 1 mmol), phenazine (360 mg, 2 mmol) and ethane-1,2-diamine (300 mg, 5 mmol) were mixed in water (ca. 3 g) and placed in a 23 ml Teflon-lined stainless steel autoclave and stirred for 20 min. The vessel was sealed and heated to 140°C for 2 d and then cooled to room temperature. Yellow flake crystals were obtained and air dried (yield: 64% based on CuCl). Analysis, calculated for C28H24ClCuN8: C 58.84, H 4.23, N 19.61%; found: C 58.76, H 4.18, N 19.55%.

Refinement

H atoms were placed in geometrically idealized positions and refined as riding atoms, with C—H = 0.93 (CH) and 0.97 (CH2) and N—H = 0.86 Å and with Uiso(H) = 1.2Ueq(C, N).

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound, showing displacement ellipsoids at the 50% probability level. [Symmetry code: (A) 1-x, y, 3/2-z.]

Fig. 2.

Fig. 2.

Packing diagram of the title compound viewed along the c axis. N—H···N and N—H···Cl hydrogen bonds are shown as dashed lines.

Crystal data

[CuCl(C14H12N4)2] F(000) = 1176
Mr = 571.54 Dx = 1.512 Mg m3
Monoclinic, C2/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2yc Cell parameters from 3886 reflections
a = 16.987 (4) Å θ = 2.4–27.4°
b = 11.606 (3) Å µ = 1.01 mm1
c = 14.487 (4) Å T = 296 K
β = 118.492 (3)° Flake, yellow
V = 2510 (1) Å3 0.29 × 0.24 × 0.06 mm
Z = 4

Data collection

Bruker APEX CCD diffractometer 2839 independent reflections
Radiation source: fine-focus sealed tube 2476 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.032
φ and ω scans θmax = 27.4°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) h = −12→22
Tmin = 0.758, Tmax = 0.942 k = −15→15
7571 measured reflections l = −18→18

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.105 H-atom parameters constrained
S = 1.03 w = 1/[σ2(Fo2) + (0.0673P)2 + 1.176P] where P = (Fo2 + 2Fc2)/3
2839 reflections (Δ/σ)max < 0.001
173 parameters Δρmax = 0.94 e Å3
0 restraints Δρmin = −0.34 e Å3

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cu1 0.5000 0.73465 (3) 0.7500 0.03244 (13)
Cl1 0.5000 0.92619 (6) 0.7500 0.0465 (2)
N1 0.54270 (10) 0.65395 (13) 0.66072 (12) 0.0286 (3)
N2 0.63130 (11) 0.57439 (14) 0.54935 (12) 0.0320 (3)
N3 0.75994 (11) 0.46038 (17) 0.96600 (13) 0.0410 (4)
H3N 0.7305 0.4785 0.9984 0.049*
N4 0.86565 (12) 0.42484 (17) 0.87242 (14) 0.0416 (4)
H4N 0.8924 0.3918 0.8420 0.050*
C1 0.50582 (13) 0.66976 (15) 0.55440 (14) 0.0290 (4)
C2 0.42264 (14) 0.72702 (16) 0.49896 (16) 0.0345 (4)
H2 0.3934 0.7547 0.5348 0.041*
C3 0.38508 (16) 0.74169 (17) 0.39227 (17) 0.0391 (5)
H3 0.3300 0.7785 0.3559 0.047*
C4 0.42941 (16) 0.7014 (2) 0.33765 (16) 0.0425 (5)
H4 0.4035 0.7126 0.2655 0.051*
C5 0.50959 (14) 0.64641 (18) 0.38897 (15) 0.0376 (4)
H5 0.5379 0.6205 0.3516 0.045*
C6 0.55040 (13) 0.62826 (16) 0.49911 (14) 0.0305 (4)
C7 0.66554 (13) 0.55593 (16) 0.65251 (14) 0.0301 (4)
C8 0.61892 (12) 0.59332 (15) 0.70931 (14) 0.0279 (4)
C9 0.65396 (13) 0.56262 (16) 0.81577 (14) 0.0317 (4)
H9 0.6237 0.5853 0.8519 0.038*
C10 0.73143 (12) 0.50019 (17) 0.86743 (14) 0.0309 (4)
C11 0.78465 (12) 0.47576 (16) 0.81447 (14) 0.0310 (4)
C12 0.74970 (13) 0.50098 (17) 0.70967 (15) 0.0340 (4)
H12 0.7821 0.4815 0.6753 0.041*
C13 0.83878 (14) 0.38791 (19) 1.01881 (16) 0.0398 (4)
H13A 0.8230 0.3080 0.9992 0.048*
H13B 0.8634 0.3945 1.0943 0.048*
C14 0.90674 (13) 0.42682 (19) 0.98672 (16) 0.0367 (4)
H14A 0.9268 0.5042 1.0124 0.044*
H14B 0.9583 0.3760 1.0168 0.044*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cu1 0.0307 (2) 0.0395 (2) 0.0346 (2) 0.000 0.02160 (15) 0.000
Cl1 0.0614 (5) 0.0364 (4) 0.0555 (4) 0.000 0.0391 (4) 0.000
N1 0.0313 (8) 0.0308 (8) 0.0322 (7) 0.0003 (6) 0.0219 (6) 0.0012 (6)
N2 0.0361 (8) 0.0371 (8) 0.0321 (8) −0.0009 (6) 0.0238 (7) −0.0010 (6)
N3 0.0355 (9) 0.0627 (12) 0.0353 (8) 0.0143 (8) 0.0255 (8) 0.0114 (8)
N4 0.0349 (9) 0.0594 (11) 0.0394 (9) 0.0118 (8) 0.0250 (8) 0.0033 (8)
C1 0.0332 (9) 0.0280 (9) 0.0321 (9) −0.0029 (7) 0.0206 (8) −0.0004 (6)
C2 0.0368 (10) 0.0321 (10) 0.0396 (10) −0.0002 (8) 0.0221 (9) 0.0014 (7)
C3 0.0369 (11) 0.0370 (10) 0.0390 (11) 0.0012 (8) 0.0146 (9) 0.0017 (8)
C4 0.0499 (12) 0.0427 (11) 0.0311 (9) −0.0009 (10) 0.0164 (9) 0.0004 (8)
C5 0.0453 (11) 0.0395 (10) 0.0332 (9) −0.0018 (9) 0.0230 (9) −0.0020 (8)
C6 0.0350 (9) 0.0313 (9) 0.0322 (9) −0.0028 (7) 0.0218 (8) −0.0015 (7)
C7 0.0332 (9) 0.0337 (9) 0.0325 (9) −0.0025 (7) 0.0231 (8) −0.0022 (7)
C8 0.0294 (9) 0.0300 (9) 0.0319 (8) −0.0019 (7) 0.0208 (7) −0.0022 (6)
C9 0.0335 (9) 0.0397 (10) 0.0323 (9) 0.0044 (7) 0.0241 (8) 0.0011 (7)
C10 0.0319 (9) 0.0371 (10) 0.0318 (8) −0.0011 (7) 0.0217 (8) −0.0011 (7)
C11 0.0305 (9) 0.0343 (9) 0.0366 (9) 0.0003 (7) 0.0229 (8) −0.0017 (7)
C12 0.0354 (10) 0.0426 (10) 0.0362 (9) 0.0021 (8) 0.0268 (8) −0.0019 (8)
C13 0.0374 (11) 0.0467 (12) 0.0407 (10) 0.0080 (9) 0.0229 (9) 0.0090 (9)
C14 0.0302 (10) 0.0432 (11) 0.0392 (10) 0.0051 (8) 0.0185 (8) 0.0028 (8)

Geometric parameters (Å, º)

Cu1—N1 1.9927 (15) C4—C5 1.360 (3)
Cu1—Cl1 2.2229 (10) C4—H4 0.9300
N1—C8 1.341 (2) C5—C6 1.420 (2)
N1—C1 1.370 (2) C5—H5 0.9300
N2—C7 1.337 (2) C7—C12 1.417 (3)
N2—C6 1.362 (3) C7—C8 1.454 (2)
N3—C10 1.352 (2) C8—C9 1.408 (2)
N3—C13 1.452 (3) C9—C10 1.370 (3)
N3—H3N 0.8600 C9—H9 0.9300
N4—C11 1.358 (3) C10—C11 1.466 (2)
N4—C14 1.458 (3) C11—C12 1.372 (3)
N4—H4N 0.8600 C12—H12 0.9300
C1—C2 1.414 (3) C13—C14 1.505 (3)
C1—C6 1.423 (2) C13—H13A 0.9700
C2—C3 1.373 (3) C13—H13B 0.9700
C2—H2 0.9300 C14—H14A 0.9700
C3—C4 1.407 (3) C14—H14B 0.9700
C3—H3 0.9300
N1i—Cu1—N1 123.94 (9) N2—C7—C12 120.33 (16)
N1i—Cu1—Cl1 118.03 (4) N2—C7—C8 121.38 (17)
N1—Cu1—Cl1 118.03 (4) C12—C7—C8 118.28 (16)
C8—N1—C1 118.01 (15) N1—C8—C9 120.37 (15)
C8—N1—Cu1 117.73 (12) N1—C8—C7 120.65 (16)
C1—N1—Cu1 123.63 (12) C9—C8—C7 118.97 (16)
C7—N2—C6 117.44 (15) C10—C9—C8 121.74 (16)
C10—N3—C13 122.01 (16) C10—C9—H9 119.1
C10—N3—H3N 119.0 C8—C9—H9 119.1
C13—N3—H3N 119.0 N3—C10—C9 121.64 (16)
C11—N4—C14 119.34 (16) N3—C10—C11 119.16 (17)
C11—N4—H4N 120.3 C9—C10—C11 119.20 (16)
C14—N4—H4N 120.3 N4—C11—C12 123.55 (16)
N1—C1—C2 119.89 (16) N4—C11—C10 117.16 (16)
N1—C1—C6 120.43 (17) C12—C11—C10 119.24 (17)
C2—C1—C6 119.68 (17) C11—C12—C7 121.74 (16)
C3—C2—C1 119.97 (19) C11—C12—H12 119.1
C3—C2—H2 120.0 C7—C12—H12 119.1
C1—C2—H2 120.0 N3—C13—C14 108.31 (16)
C2—C3—C4 120.4 (2) N3—C13—H13A 110.0
C2—C3—H3 119.8 C14—C13—H13A 110.0
C4—C3—H3 119.8 N3—C13—H13B 110.0
C5—C4—C3 120.90 (19) C14—C13—H13B 110.0
C5—C4—H4 119.5 H13A—C13—H13B 108.4
C3—C4—H4 119.5 N4—C14—C13 108.89 (17)
C4—C5—C6 120.59 (19) N4—C14—H14A 109.9
C4—C5—H5 119.7 C13—C14—H14A 109.9
C6—C5—H5 119.7 N4—C14—H14B 109.9
N2—C6—C5 119.74 (16) C13—C14—H14B 109.9
N2—C6—C1 121.78 (16) H14A—C14—H14B 108.3
C5—C6—C1 118.47 (18)

Symmetry code: (i) −x+1, y, −z+3/2.

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
N3—H3N···N2ii 0.86 2.22 2.986 (2) 148
N4—H4N···Cl1iii 0.86 2.76 3.4952 (18) 145

Symmetry codes: (ii) x, −y+1, z+1/2; (iii) x+1/2, y−1/2, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HY2514).

References

  1. Allen, F. H. (2002). Acta Cryst. B58, 380–388. [DOI] [PubMed]
  2. Bruker (2007). SMART and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Dai, J.-X., Zhu, H.-L., Rothenberger, A. & Zhang, Q.-F. (2007). Z. Naturforsch. Teil B, 62, 1112–1116.
  4. Grove, H., Sletten, J., Julve, M. & Lloret, F. (2000). J. Chem. Soc. Dalton Trans. pp. 515–526.
  5. Grove, H., Sletten, J., Julve, M., Lloret, F. & Cano, J. (2001). J. Chem. Soc. Dalton Trans. pp. 259–265.
  6. Näther, C. & Beck, A. (2004). Acta Cryst. E60, m1008–m1009.
  7. Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
  8. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  9. Xu, C., Li, Y., Duan, T., Chen, Q. & Zhang, Q.-F. (2011). J. Cluster Sci. 22, 107–119.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812005582/hy2514sup1.cif

e-68-0m297-sup1.cif (16.6KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812005582/hy2514Isup2.hkl

e-68-0m297-Isup2.hkl (139.5KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

RESOURCES