Abstract
In the title complex, [CuCl(C14H12N4)2], the CuI atom, lying on a twofold rotation axis, is coordinated by two N atoms of two 1,2,3,4-tetrahydro-1,4,6,11-tetraazanaphthacene ligands and one Cl atom, also lying on the twofold rotation axis, in a distorted trigonal-planar geometry. The complex molecules are connected into a one-dimensional structure along [001] via N—H⋯N hydrogen bonds and further into a three-dimensional structure via N—H⋯Cl hydrogen bonds. π–π interactions between the pyrazine and benzene rings and between the benzene rings [centroid–centroid distances = 3.5635 (15) and 3.9128 (16) Å] are present.
Related literature
For transition metal complexes with heterocyclic ligands, see: Dai et al. (2007 ▶); Grove et al. (2000 ▶, 2001 ▶); Näther & Beck (2004 ▶); Xu et al. (2011 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶).
Experimental
Crystal data
[CuCl(C14H12N4)2]
M r = 571.54
Monoclinic,
a = 16.987 (4) Å
b = 11.606 (3) Å
c = 14.487 (4) Å
β = 118.492 (3)°
V = 2510 (1) Å3
Z = 4
Mo Kα radiation
μ = 1.01 mm−1
T = 296 K
0.29 × 0.24 × 0.06 mm
Data collection
Bruker APEX CCD diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.758, T max = 0.942
7571 measured reflections
2839 independent reflections
2476 reflections with I > 2σ(I)
R int = 0.032
Refinement
R[F 2 > 2σ(F 2)] = 0.036
wR(F 2) = 0.105
S = 1.03
2839 reflections
173 parameters
H-atom parameters constrained
Δρmax = 0.94 e Å−3
Δρmin = −0.34 e Å−3
Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812005582/hy2514sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812005582/hy2514Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N3—H3N⋯N2i | 0.86 | 2.22 | 2.986 (2) | 148 |
| N4—H4N⋯Cl1ii | 0.86 | 2.76 | 3.4952 (18) | 145 |
Symmetry codes: (i)
; (ii)
.
Acknowledgments
This project was supported by the Program for New Century Excellent Talents in Universities of China (grant No. NCET-08–0618).
supplementary crystallographic information
Comment
The heterocyclic compounds involving aromatic system with condensed pyrazine, pyridine and piperidine rings have been shown to occur as a rigid bridge in transition metal complexes, which are expected to be good building blocks for creating coordination polymers due to the flexibility of the heterocyclic ligands (Grove et al., 2000, 2001). We have recently been studying the coordination chemistry of polyamines to transition metal halides (Dai et al., 2007, Xu et al., 2011). In the course of this work, we have synthesized the title copper(I) complex with a new 1,2,3,4-tetrahydro-1,4,6,11-tetraazanaphthacene ligand formed from the condensing reaction of phenazine and ethane-1,2-diamine under hydrothermal conditions. Here we report the crystal structure of the mononuclear copper(I) complex.
The molecular structure of the title complex is depicted in Fig. 1. The CuI atom, lying on a twofold rotation axis, is coordinated by two N atoms of two organic ligands and one Cl atom. The Cu—N bond length of 1.9927 (15) Å and the Cu—Cl bond length of 2.2229 (10) Å are in the range of those found in related structures retrieved from the Cambridge Structural Database (Allen, 2002). The N—Cu—N and N—Cu—Cl angles are 123.94 (9) and 118.03 (4)°. The Cu atom shows a distorted trigonal-planar coordination geometry (Näther & Beck, 2004). In the crystal, the discrete complex molecules are connected by N—H···N and N—H···Cl hydrogen bonds (Table 1) into a three-dimensional structure (Fig. 2). π–π interactions between the pyrazine and benzene rings and between the benzene rings [centroid–centroid distances = 3.5635 (15) and 3.9128 (16) Å] are present.
Experimental
CuCl (99 mg, 1 mmol), phenazine (360 mg, 2 mmol) and ethane-1,2-diamine (300 mg, 5 mmol) were mixed in water (ca. 3 g) and placed in a 23 ml Teflon-lined stainless steel autoclave and stirred for 20 min. The vessel was sealed and heated to 140°C for 2 d and then cooled to room temperature. Yellow flake crystals were obtained and air dried (yield: 64% based on CuCl). Analysis, calculated for C28H24ClCuN8: C 58.84, H 4.23, N 19.61%; found: C 58.76, H 4.18, N 19.55%.
Refinement
H atoms were placed in geometrically idealized positions and refined as riding atoms, with C—H = 0.93 (CH) and 0.97 (CH2) and N—H = 0.86 Å and with Uiso(H) = 1.2Ueq(C, N).
Figures
Fig. 1.
The molecular structure of the title compound, showing displacement ellipsoids at the 50% probability level. [Symmetry code: (A) 1-x, y, 3/2-z.]
Fig. 2.
Packing diagram of the title compound viewed along the c axis. N—H···N and N—H···Cl hydrogen bonds are shown as dashed lines.
Crystal data
| [CuCl(C14H12N4)2] | F(000) = 1176 |
| Mr = 571.54 | Dx = 1.512 Mg m−3 |
| Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -C 2yc | Cell parameters from 3886 reflections |
| a = 16.987 (4) Å | θ = 2.4–27.4° |
| b = 11.606 (3) Å | µ = 1.01 mm−1 |
| c = 14.487 (4) Å | T = 296 K |
| β = 118.492 (3)° | Flake, yellow |
| V = 2510 (1) Å3 | 0.29 × 0.24 × 0.06 mm |
| Z = 4 |
Data collection
| Bruker APEX CCD diffractometer | 2839 independent reflections |
| Radiation source: fine-focus sealed tube | 2476 reflections with I > 2σ(I) |
| Graphite monochromator | Rint = 0.032 |
| φ and ω scans | θmax = 27.4°, θmin = 2.3° |
| Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −12→22 |
| Tmin = 0.758, Tmax = 0.942 | k = −15→15 |
| 7571 measured reflections | l = −18→18 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.036 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.105 | H-atom parameters constrained |
| S = 1.03 | w = 1/[σ2(Fo2) + (0.0673P)2 + 1.176P] where P = (Fo2 + 2Fc2)/3 |
| 2839 reflections | (Δ/σ)max < 0.001 |
| 173 parameters | Δρmax = 0.94 e Å−3 |
| 0 restraints | Δρmin = −0.34 e Å−3 |
Special details
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Cu1 | 0.5000 | 0.73465 (3) | 0.7500 | 0.03244 (13) | |
| Cl1 | 0.5000 | 0.92619 (6) | 0.7500 | 0.0465 (2) | |
| N1 | 0.54270 (10) | 0.65395 (13) | 0.66072 (12) | 0.0286 (3) | |
| N2 | 0.63130 (11) | 0.57439 (14) | 0.54935 (12) | 0.0320 (3) | |
| N3 | 0.75994 (11) | 0.46038 (17) | 0.96600 (13) | 0.0410 (4) | |
| H3N | 0.7305 | 0.4785 | 0.9984 | 0.049* | |
| N4 | 0.86565 (12) | 0.42484 (17) | 0.87242 (14) | 0.0416 (4) | |
| H4N | 0.8924 | 0.3918 | 0.8420 | 0.050* | |
| C1 | 0.50582 (13) | 0.66976 (15) | 0.55440 (14) | 0.0290 (4) | |
| C2 | 0.42264 (14) | 0.72702 (16) | 0.49896 (16) | 0.0345 (4) | |
| H2 | 0.3934 | 0.7547 | 0.5348 | 0.041* | |
| C3 | 0.38508 (16) | 0.74169 (17) | 0.39227 (17) | 0.0391 (5) | |
| H3 | 0.3300 | 0.7785 | 0.3559 | 0.047* | |
| C4 | 0.42941 (16) | 0.7014 (2) | 0.33765 (16) | 0.0425 (5) | |
| H4 | 0.4035 | 0.7126 | 0.2655 | 0.051* | |
| C5 | 0.50959 (14) | 0.64641 (18) | 0.38897 (15) | 0.0376 (4) | |
| H5 | 0.5379 | 0.6205 | 0.3516 | 0.045* | |
| C6 | 0.55040 (13) | 0.62826 (16) | 0.49911 (14) | 0.0305 (4) | |
| C7 | 0.66554 (13) | 0.55593 (16) | 0.65251 (14) | 0.0301 (4) | |
| C8 | 0.61892 (12) | 0.59332 (15) | 0.70931 (14) | 0.0279 (4) | |
| C9 | 0.65396 (13) | 0.56262 (16) | 0.81577 (14) | 0.0317 (4) | |
| H9 | 0.6237 | 0.5853 | 0.8519 | 0.038* | |
| C10 | 0.73143 (12) | 0.50019 (17) | 0.86743 (14) | 0.0309 (4) | |
| C11 | 0.78465 (12) | 0.47576 (16) | 0.81447 (14) | 0.0310 (4) | |
| C12 | 0.74970 (13) | 0.50098 (17) | 0.70967 (15) | 0.0340 (4) | |
| H12 | 0.7821 | 0.4815 | 0.6753 | 0.041* | |
| C13 | 0.83878 (14) | 0.38791 (19) | 1.01881 (16) | 0.0398 (4) | |
| H13A | 0.8230 | 0.3080 | 0.9992 | 0.048* | |
| H13B | 0.8634 | 0.3945 | 1.0943 | 0.048* | |
| C14 | 0.90674 (13) | 0.42682 (19) | 0.98672 (16) | 0.0367 (4) | |
| H14A | 0.9268 | 0.5042 | 1.0124 | 0.044* | |
| H14B | 0.9583 | 0.3760 | 1.0168 | 0.044* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Cu1 | 0.0307 (2) | 0.0395 (2) | 0.0346 (2) | 0.000 | 0.02160 (15) | 0.000 |
| Cl1 | 0.0614 (5) | 0.0364 (4) | 0.0555 (4) | 0.000 | 0.0391 (4) | 0.000 |
| N1 | 0.0313 (8) | 0.0308 (8) | 0.0322 (7) | 0.0003 (6) | 0.0219 (6) | 0.0012 (6) |
| N2 | 0.0361 (8) | 0.0371 (8) | 0.0321 (8) | −0.0009 (6) | 0.0238 (7) | −0.0010 (6) |
| N3 | 0.0355 (9) | 0.0627 (12) | 0.0353 (8) | 0.0143 (8) | 0.0255 (8) | 0.0114 (8) |
| N4 | 0.0349 (9) | 0.0594 (11) | 0.0394 (9) | 0.0118 (8) | 0.0250 (8) | 0.0033 (8) |
| C1 | 0.0332 (9) | 0.0280 (9) | 0.0321 (9) | −0.0029 (7) | 0.0206 (8) | −0.0004 (6) |
| C2 | 0.0368 (10) | 0.0321 (10) | 0.0396 (10) | −0.0002 (8) | 0.0221 (9) | 0.0014 (7) |
| C3 | 0.0369 (11) | 0.0370 (10) | 0.0390 (11) | 0.0012 (8) | 0.0146 (9) | 0.0017 (8) |
| C4 | 0.0499 (12) | 0.0427 (11) | 0.0311 (9) | −0.0009 (10) | 0.0164 (9) | 0.0004 (8) |
| C5 | 0.0453 (11) | 0.0395 (10) | 0.0332 (9) | −0.0018 (9) | 0.0230 (9) | −0.0020 (8) |
| C6 | 0.0350 (9) | 0.0313 (9) | 0.0322 (9) | −0.0028 (7) | 0.0218 (8) | −0.0015 (7) |
| C7 | 0.0332 (9) | 0.0337 (9) | 0.0325 (9) | −0.0025 (7) | 0.0231 (8) | −0.0022 (7) |
| C8 | 0.0294 (9) | 0.0300 (9) | 0.0319 (8) | −0.0019 (7) | 0.0208 (7) | −0.0022 (6) |
| C9 | 0.0335 (9) | 0.0397 (10) | 0.0323 (9) | 0.0044 (7) | 0.0241 (8) | 0.0011 (7) |
| C10 | 0.0319 (9) | 0.0371 (10) | 0.0318 (8) | −0.0011 (7) | 0.0217 (8) | −0.0011 (7) |
| C11 | 0.0305 (9) | 0.0343 (9) | 0.0366 (9) | 0.0003 (7) | 0.0229 (8) | −0.0017 (7) |
| C12 | 0.0354 (10) | 0.0426 (10) | 0.0362 (9) | 0.0021 (8) | 0.0268 (8) | −0.0019 (8) |
| C13 | 0.0374 (11) | 0.0467 (12) | 0.0407 (10) | 0.0080 (9) | 0.0229 (9) | 0.0090 (9) |
| C14 | 0.0302 (10) | 0.0432 (11) | 0.0392 (10) | 0.0051 (8) | 0.0185 (8) | 0.0028 (8) |
Geometric parameters (Å, º)
| Cu1—N1 | 1.9927 (15) | C4—C5 | 1.360 (3) |
| Cu1—Cl1 | 2.2229 (10) | C4—H4 | 0.9300 |
| N1—C8 | 1.341 (2) | C5—C6 | 1.420 (2) |
| N1—C1 | 1.370 (2) | C5—H5 | 0.9300 |
| N2—C7 | 1.337 (2) | C7—C12 | 1.417 (3) |
| N2—C6 | 1.362 (3) | C7—C8 | 1.454 (2) |
| N3—C10 | 1.352 (2) | C8—C9 | 1.408 (2) |
| N3—C13 | 1.452 (3) | C9—C10 | 1.370 (3) |
| N3—H3N | 0.8600 | C9—H9 | 0.9300 |
| N4—C11 | 1.358 (3) | C10—C11 | 1.466 (2) |
| N4—C14 | 1.458 (3) | C11—C12 | 1.372 (3) |
| N4—H4N | 0.8600 | C12—H12 | 0.9300 |
| C1—C2 | 1.414 (3) | C13—C14 | 1.505 (3) |
| C1—C6 | 1.423 (2) | C13—H13A | 0.9700 |
| C2—C3 | 1.373 (3) | C13—H13B | 0.9700 |
| C2—H2 | 0.9300 | C14—H14A | 0.9700 |
| C3—C4 | 1.407 (3) | C14—H14B | 0.9700 |
| C3—H3 | 0.9300 | ||
| N1i—Cu1—N1 | 123.94 (9) | N2—C7—C12 | 120.33 (16) |
| N1i—Cu1—Cl1 | 118.03 (4) | N2—C7—C8 | 121.38 (17) |
| N1—Cu1—Cl1 | 118.03 (4) | C12—C7—C8 | 118.28 (16) |
| C8—N1—C1 | 118.01 (15) | N1—C8—C9 | 120.37 (15) |
| C8—N1—Cu1 | 117.73 (12) | N1—C8—C7 | 120.65 (16) |
| C1—N1—Cu1 | 123.63 (12) | C9—C8—C7 | 118.97 (16) |
| C7—N2—C6 | 117.44 (15) | C10—C9—C8 | 121.74 (16) |
| C10—N3—C13 | 122.01 (16) | C10—C9—H9 | 119.1 |
| C10—N3—H3N | 119.0 | C8—C9—H9 | 119.1 |
| C13—N3—H3N | 119.0 | N3—C10—C9 | 121.64 (16) |
| C11—N4—C14 | 119.34 (16) | N3—C10—C11 | 119.16 (17) |
| C11—N4—H4N | 120.3 | C9—C10—C11 | 119.20 (16) |
| C14—N4—H4N | 120.3 | N4—C11—C12 | 123.55 (16) |
| N1—C1—C2 | 119.89 (16) | N4—C11—C10 | 117.16 (16) |
| N1—C1—C6 | 120.43 (17) | C12—C11—C10 | 119.24 (17) |
| C2—C1—C6 | 119.68 (17) | C11—C12—C7 | 121.74 (16) |
| C3—C2—C1 | 119.97 (19) | C11—C12—H12 | 119.1 |
| C3—C2—H2 | 120.0 | C7—C12—H12 | 119.1 |
| C1—C2—H2 | 120.0 | N3—C13—C14 | 108.31 (16) |
| C2—C3—C4 | 120.4 (2) | N3—C13—H13A | 110.0 |
| C2—C3—H3 | 119.8 | C14—C13—H13A | 110.0 |
| C4—C3—H3 | 119.8 | N3—C13—H13B | 110.0 |
| C5—C4—C3 | 120.90 (19) | C14—C13—H13B | 110.0 |
| C5—C4—H4 | 119.5 | H13A—C13—H13B | 108.4 |
| C3—C4—H4 | 119.5 | N4—C14—C13 | 108.89 (17) |
| C4—C5—C6 | 120.59 (19) | N4—C14—H14A | 109.9 |
| C4—C5—H5 | 119.7 | C13—C14—H14A | 109.9 |
| C6—C5—H5 | 119.7 | N4—C14—H14B | 109.9 |
| N2—C6—C5 | 119.74 (16) | C13—C14—H14B | 109.9 |
| N2—C6—C1 | 121.78 (16) | H14A—C14—H14B | 108.3 |
| C5—C6—C1 | 118.47 (18) |
Symmetry code: (i) −x+1, y, −z+3/2.
Hydrogen-bond geometry (Å, º)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N3—H3N···N2ii | 0.86 | 2.22 | 2.986 (2) | 148 |
| N4—H4N···Cl1iii | 0.86 | 2.76 | 3.4952 (18) | 145 |
Symmetry codes: (ii) x, −y+1, z+1/2; (iii) x+1/2, y−1/2, z.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HY2514).
References
- Allen, F. H. (2002). Acta Cryst. B58, 380–388. [DOI] [PubMed]
- Bruker (2007). SMART and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
- Dai, J.-X., Zhu, H.-L., Rothenberger, A. & Zhang, Q.-F. (2007). Z. Naturforsch. Teil B, 62, 1112–1116.
- Grove, H., Sletten, J., Julve, M. & Lloret, F. (2000). J. Chem. Soc. Dalton Trans. pp. 515–526.
- Grove, H., Sletten, J., Julve, M., Lloret, F. & Cano, J. (2001). J. Chem. Soc. Dalton Trans. pp. 259–265.
- Näther, C. & Beck, A. (2004). Acta Cryst. E60, m1008–m1009.
- Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Xu, C., Li, Y., Duan, T., Chen, Q. & Zhang, Q.-F. (2011). J. Cluster Sci. 22, 107–119.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812005582/hy2514sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812005582/hy2514Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


