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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Feb 29;68(Pt 3):o895. doi: 10.1107/S1600536812007957

N-[3-(Dimethyl­amino)­prop­yl]-N′-(2-hy­droxy-5-methyl­phen­yl)oxamide

Yong-Jun Zheng a, Kang Zheng a, Zhi-Yong Wu b, Yantuan Li a,*
PMCID: PMC3297941  PMID: 22412744

Abstract

In the title compound, C14H21N3O3, the oxamide group has a transoid conformation. In the crystal, the mol­ecules are connected by N—H⋯O and O—H⋯N hydrogen bonds into a double chain running along the b axis.

Related literature  

For the use of N,N′-bis­(substituted)oxamides in the synthesis of nuclear complexes, see: Ojima & Nonoyama (1988); Ruiz et al. (1999). For related compounds, see: Han et al. (2007); Martinez et al. (1998); Yue et al. (2012). graphic file with name e-68-0o895-scheme1.jpg

Experimental  

Crystal data  

  • C14H21N3O3

  • M r = 279.34

  • Monoclinic, Inline graphic

  • a = 11.542 (2) Å

  • b = 10.304 (2) Å

  • c = 13.860 (3) Å

  • β = 109.16 (3)°

  • V = 1557.2 (5) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.09 mm−1

  • T = 296 K

  • 0.27 × 0.24 × 0.17 mm

Data collection  

  • Bruker APEX diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 2003) T min = 0.977, T max = 0.986

  • 7686 measured reflections

  • 3099 independent reflections

  • 2093 reflections with I > 2σ(I)

  • R int = 0.022

  • Standard reflections: 0

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.053

  • wR(F 2) = 0.151

  • S = 1.02

  • 3099 reflections

  • 196 parameters

  • 1 restraint

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.30 e Å−3

  • Δρmin = −0.26 e Å−3

Data collection: SMART (Bruker, 2002); cell refinement: SAINT (Bruker, 2002); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP (Siemens, 1994); software used to prepare material for publication: WinGX (Farrugia, 1999).

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812007957/bt5821sup1.cif

e-68-0o895-sup1.cif (18.3KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812007957/bt5821Isup2.hkl

e-68-0o895-Isup2.hkl (149KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812007957/bt5821Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N2—H2⋯O2i 0.92 (3) 2.13 (3) 2.945 (2) 147 (2)
O1—H1A⋯N3ii 0.90 (2) 1.76 (2) 2.654 (2) 168 (3)

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

This project was supported by the Natural Science Foundation of China (grant No. 21071133) and the Natural Science Foundation of Qingdao City.

supplementary crystallographic information

Comment

N,N'-bis(substituented)oxamides as multiatom bridging ligands has played an important role in designing and synthesizing polymetallic systems (Ojima & Nonoyama, 1988; Ruiz et al., 1999). Due to the difficulties of synthesis only few dissymmetrical bis-substituented-oxamide ligand has been reported. In order to provide more examples of such ligand, quite recently, we reported the structure of (3-{[N-(5-Chloro-2-hydroxyphenyl)oxamoyl]amino}propyl)dimethylazanium perchlorate (Yue et al.,2012). In continuation of our earlier work, the title compound was synthesized and its structure is reported here.

As shown in Fig. 1, the title compound has a trans-conformation of the oxamide group. The whole compound likes the alphabet `L'. The benzene ring is almost coplanar to the oxamide group [11.44 (9)°], just like that in the compound of N,N'-bis(2-Hydroxyphenyl)oxamide (Martinez et al., 1998). However, the plane through the other substituent group, aminopropyl, is perpendicular to the oxamide plane [83.49 (12)°]. The torsion angle of C9—N2—C10—C11 is 106.7 (2)° (Table 1). And the conformation for the C10—C11 bond is gauche. While in the compound 2-(N'-[3-(Dimethylammonio)propyl)oxamido]benzoate (Han et al., 2007), the corresponding angle is 151.3 (3)° and the conformation is anti.

A centrosymmetric dimer of a pair of the compounds is formed via the hydrogen bonds of the oxamide groups (Fig. 2, Table 2). These dimers are further assembled to a chain parallel to the b-axis through the hydrogen bonds between the phenolic hydroxyl groups and the tertiary amino groups.

Experimental

All reagents were of AR grade and obtained commercially without further purification. The title compound was prepared according to the method proposed by Han et al. (2007). A tetrahydrofuran (THF) solution (8 ml) of ethyl oxalyl chloride (1.11 ml, 10 mmol) was added dropwise into a THF solution (50 ml) of 2-amino-4-methylphenol (1.23 g, 10 mmol) with continuous stirring. The mixture was stirred quickly for 1 h and became clear. Then 20 ml ethanol was further added and the mixture was added dropwise into the solution (10 ml) of 3-dimethylamino-propylamine (1.02 g, 10 mmol) with stirring and kept the temperature at 273 K for 9 h. The title compound was precipitated as a white powder and washed with ethanol for several times and dried under vacuum. Yield: 1.83 g (66%). Colourless crystals of compound with the suitable size for X-ray analysis were obtained from an ethanol/water (1:1) mixture by slow evaporation for one week at room temperature.

Anal. Calcd. for C14H21N3O3 (%): C, 60.20; H, 7.58; N, 15.04. Found: C, 60.33; H, 7.65; N, 15.00.

Refinement

All H atoms were found in a difference Fourier map. Those bonded to N and O were freely refined with the O1—H1A bond restrained to a length of 0.86 (2) Å. Other H atoms were placed in calculated positions, with C—H = 0.93 (aromatic), 0.97 (methylene) and 0.96 (methyl), and refined using a riding model with Uiso(H) = 1.2UeqC or 1.5UeqC(methyl).

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound. The displacement ellipsoids are drawn at the 30% probability levels and H atoms are shown as small spheres of arbitrary radii.

Fig. 2.

Fig. 2.

A view of a hydrogen bonding chain extending along the b-axis. [Symmetry codes: i = -x + 1, -y, -z; ii = x, y + 1, z.]

Crystal data

C14H21N3O3 F(000) = 600
Mr = 279.34 Dx = 1.191 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 2107 reflections
a = 11.542 (2) Å θ = 2.5–23.3°
b = 10.304 (2) Å µ = 0.09 mm1
c = 13.860 (3) Å T = 296 K
β = 109.16 (3)° Block, colourless
V = 1557.2 (5) Å3 0.27 × 0.24 × 0.17 mm
Z = 4

Data collection

Bruker APEX diffractometer 3099 independent reflections
Radiation source: fine-focus sealed tube 2093 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.022
φ and ω scans θmax = 26.1°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) h = −6→14
Tmin = 0.977, Tmax = 0.986 k = −12→12
7686 measured reflections l = −17→12

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.053 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.151 H atoms treated by a mixture of independent and constrained refinement
S = 1.02 w = 1/[σ2(Fo2) + (0.068P)2 + 0.3954P] where P = (Fo2 + 2Fc2)/3
3099 reflections (Δ/σ)max < 0.001
196 parameters Δρmax = 0.30 e Å3
1 restraint Δρmin = −0.26 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.78563 (15) 0.54467 (14) 0.12601 (15) 0.0756 (5)
O2 0.52711 (14) 0.16017 (13) 0.05547 (12) 0.0675 (4)
O3 0.81264 (15) 0.18892 (16) 0.01920 (14) 0.0812 (5)
N1 0.66500 (17) 0.32727 (16) 0.08912 (13) 0.0551 (4)
N2 0.67544 (19) 0.02499 (17) −0.02835 (13) 0.0606 (5)
N3 0.92876 (16) −0.24706 (17) 0.16828 (17) 0.0720 (6)
C1 0.67333 (18) 0.54785 (18) 0.13783 (15) 0.0535 (5)
C2 0.60784 (17) 0.43098 (17) 0.12124 (14) 0.0491 (5)
C3 0.49425 (19) 0.4244 (2) 0.13394 (15) 0.0574 (5)
H3A 0.4521 0.3459 0.1235 0.069*
C4 0.4419 (2) 0.5333 (2) 0.16214 (16) 0.0623 (5)
C5 0.5060 (2) 0.6490 (2) 0.17547 (15) 0.0617 (6)
H5 0.4715 0.7234 0.1927 0.074*
C6 0.62038 (19) 0.65640 (19) 0.16368 (15) 0.0587 (5)
H6 0.6618 0.7353 0.1733 0.070*
C7 0.3173 (2) 0.5254 (3) 0.1756 (3) 0.0982 (9)
H7A 0.3224 0.4715 0.2333 0.147*
H7B 0.2593 0.4890 0.1152 0.147*
H7C 0.2912 0.6109 0.1867 0.147*
C8 0.62327 (18) 0.20947 (18) 0.05512 (14) 0.0522 (5)
C9 0.7136 (2) 0.1393 (2) 0.01338 (15) 0.0568 (5)
C10 0.7491 (3) −0.0559 (2) −0.07135 (18) 0.0756 (7)
H10A 0.8154 −0.0044 −0.0798 0.091*
H10B 0.6987 −0.0857 −0.1384 0.091*
C11 0.8022 (2) −0.1719 (2) −0.00525 (19) 0.0739 (7)
H11A 0.8523 −0.2210 −0.0365 0.089*
H11B 0.7358 −0.2277 −0.0022 0.089*
C12 0.8800 (2) −0.1347 (2) 0.10290 (19) 0.0692 (6)
H12A 0.9478 −0.0812 0.0999 0.083*
H12B 0.8306 −0.0833 0.1333 0.083*
C13 1.0343 (3) −0.3023 (3) 0.1486 (4) 0.1352 (16)
H13A 1.0639 −0.3754 0.1927 0.203*
H13B 1.0979 −0.2381 0.1613 0.203*
H13C 1.0112 −0.3299 0.0787 0.203*
C14 0.9619 (3) −0.2082 (3) 0.2779 (2) 0.1081 (10)
H14A 1.0234 −0.1416 0.2926 0.162*
H14B 0.9933 −0.2822 0.3206 0.162*
H14C 0.8904 −0.1759 0.2908 0.162*
H1 0.732 (2) 0.343 (2) 0.0811 (16) 0.062 (7)*
H2 0.599 (2) −0.003 (2) −0.0308 (18) 0.078 (8)*
H1A 0.824 (2) 0.622 (2) 0.139 (2) 0.109 (10)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0618 (10) 0.0484 (9) 0.1234 (14) −0.0114 (7) 0.0397 (10) −0.0126 (9)
O2 0.0639 (9) 0.0513 (8) 0.0878 (11) −0.0137 (7) 0.0256 (8) −0.0038 (7)
O3 0.0699 (11) 0.0702 (10) 0.1088 (13) −0.0180 (9) 0.0365 (10) −0.0231 (9)
N1 0.0503 (10) 0.0458 (9) 0.0663 (11) −0.0055 (8) 0.0153 (9) −0.0007 (8)
N2 0.0644 (12) 0.0522 (10) 0.0612 (11) −0.0056 (9) 0.0152 (9) −0.0059 (8)
N3 0.0500 (10) 0.0522 (10) 0.1121 (16) 0.0014 (8) 0.0245 (10) 0.0097 (10)
C1 0.0525 (11) 0.0476 (11) 0.0571 (11) −0.0021 (9) 0.0134 (9) 0.0028 (9)
C2 0.0503 (11) 0.0444 (10) 0.0477 (10) −0.0003 (8) 0.0094 (8) 0.0034 (8)
C3 0.0544 (12) 0.0572 (12) 0.0576 (12) −0.0071 (9) 0.0142 (10) 0.0030 (9)
C4 0.0556 (12) 0.0699 (14) 0.0602 (12) 0.0021 (11) 0.0176 (10) 0.0001 (10)
C5 0.0642 (13) 0.0608 (13) 0.0562 (12) 0.0106 (11) 0.0144 (10) −0.0013 (10)
C6 0.0639 (13) 0.0459 (11) 0.0620 (12) −0.0015 (9) 0.0147 (10) −0.0016 (9)
C7 0.0717 (17) 0.106 (2) 0.128 (2) −0.0018 (16) 0.0483 (17) −0.0125 (19)
C8 0.0538 (12) 0.0433 (10) 0.0524 (11) −0.0039 (9) 0.0078 (9) 0.0045 (8)
C9 0.0580 (12) 0.0503 (11) 0.0562 (11) −0.0054 (10) 0.0109 (10) 0.0010 (9)
C10 0.1010 (19) 0.0682 (14) 0.0629 (14) −0.0081 (13) 0.0340 (13) −0.0143 (11)
C11 0.0895 (17) 0.0542 (13) 0.0863 (16) −0.0011 (12) 0.0402 (14) −0.0182 (12)
C12 0.0598 (13) 0.0476 (11) 0.0948 (17) −0.0030 (10) 0.0182 (12) −0.0023 (11)
C13 0.0772 (19) 0.096 (2) 0.253 (5) 0.0301 (17) 0.083 (3) 0.056 (3)
C14 0.097 (2) 0.096 (2) 0.100 (2) 0.0002 (17) −0.0096 (17) 0.0116 (17)

Geometric parameters (Å, º)

O1—C1 1.359 (3) C5—H5 0.9300
O2—C8 1.222 (2) C6—H6 0.9300
O3—C9 1.231 (2) C7—H7A 0.9600
N1—C2 1.403 (3) C7—H7B 0.9600
N1—C8 1.334 (2) C7—H7C 0.9600
N2—C9 1.322 (3) C8—C9 1.530 (3)
O1—H1A 0.904 (17) C10—C11 1.509 (3)
N1—H1 0.83 (2) C10—H10A 0.9700
N2—C10 1.451 (3) C10—H10B 0.9700
N2—H2 0.92 (3) C11—C12 1.522 (3)
N3—C13 1.450 (3) C11—H11A 0.9700
N3—C12 1.464 (3) C11—H11B 0.9700
N3—C14 1.494 (4) C12—H12A 0.9700
C1—C6 1.377 (3) C12—H12B 0.9700
C1—C2 1.400 (3) C13—H13A 0.9600
C2—C3 1.381 (3) C13—H13B 0.9600
C3—C4 1.390 (3) C13—H13C 0.9600
C3—H3A 0.9300 C14—H14A 0.9600
C4—C5 1.383 (3) C14—H14B 0.9600
C4—C7 1.511 (3) C14—H14C 0.9600
C5—C6 1.385 (3)
C1—O1—H1A 112.6 (18) O2—C8—C9 122.52 (18)
C8—N1—C2 130.73 (19) N1—C8—C9 110.60 (18)
C8—N1—H1 112.0 (15) O3—C9—N2 124.6 (2)
C2—N1—H1 116.6 (15) O3—C9—C8 120.83 (19)
C9—N2—C10 122.4 (2) N2—C9—C8 114.58 (19)
C9—N2—H2 118.2 (16) N2—C10—C11 112.48 (19)
C10—N2—H2 119.4 (16) N2—C10—H10A 109.1
C13—N3—C12 111.7 (2) C11—C10—H10A 109.1
C13—N3—C14 110.2 (3) N2—C10—H10B 109.1
C12—N3—C14 109.6 (2) C11—C10—H10B 109.1
O1—C1—C6 124.96 (18) H10A—C10—H10B 107.8
O1—C1—C2 116.38 (17) C10—C11—C12 112.92 (18)
C6—C1—C2 118.66 (19) C10—C11—H11A 109.0
C3—C2—C1 120.35 (18) C12—C11—H11A 109.0
C3—C2—N1 124.63 (17) C10—C11—H11B 109.0
C1—C2—N1 114.99 (18) C12—C11—H11B 109.0
C2—C3—C4 120.99 (19) H11A—C11—H11B 107.8
C2—C3—H3A 119.5 N3—C12—C11 113.16 (18)
C4—C3—H3A 119.5 N3—C12—H12A 108.9
C5—C4—C3 118.1 (2) C11—C12—H12A 108.9
C5—C4—C7 121.2 (2) N3—C12—H12B 108.9
C3—C4—C7 120.7 (2) C11—C12—H12B 108.9
C4—C5—C6 121.34 (19) H12A—C12—H12B 107.8
C4—C5—H5 119.3 N3—C13—H13A 109.5
C6—C5—H5 119.3 N3—C13—H13B 109.5
C1—C6—C5 120.51 (19) H13A—C13—H13B 109.5
C1—C6—H6 119.7 N3—C13—H13C 109.5
C5—C6—H6 119.7 H13A—C13—H13C 109.5
C4—C7—H7A 109.5 H13B—C13—H13C 109.5
C4—C7—H7B 109.5 N3—C14—H14A 109.5
H7A—C7—H7B 109.5 N3—C14—H14B 109.5
C4—C7—H7C 109.5 H14A—C14—H14B 109.5
H7A—C7—H7C 109.5 N3—C14—H14C 109.5
H7B—C7—H7C 109.5 H14A—C14—H14C 109.5
O2—C8—N1 126.9 (2) H14B—C14—H14C 109.5
C8—N1—C2—C3 7.4 (3) O1—C1—C6—C5 −178.97 (19)
C8—N1—C2—C1 −170.86 (19) C2—C1—C6—C5 1.6 (3)
C9—N2—C10—C11 106.7 (2) C4—C5—C6—C1 0.2 (3)
N2—C10—C11—C12 −57.1 (3) C2—N1—C8—O2 −9.1 (3)
O1—C1—C2—C3 178.43 (18) C2—N1—C8—C9 170.82 (19)
C6—C1—C2—C3 −2.1 (3) C10—N2—C9—O3 0.8 (3)
O1—C1—C2—N1 −3.2 (3) C10—N2—C9—C8 −179.59 (18)
C6—C1—C2—N1 176.24 (17) O2—C8—C9—O3 −176.04 (19)
C1—C2—C3—C4 0.8 (3) N1—C8—C9—O3 4.0 (3)
N1—C2—C3—C4 −177.40 (19) O2—C8—C9—N2 4.3 (3)
C2—C3—C4—C5 1.1 (3) N1—C8—C9—N2 −175.62 (17)
C2—C3—C4—C7 179.8 (2) C13—N3—C12—C11 78.6 (3)
C3—C4—C5—C6 −1.6 (3) C14—N3—C12—C11 −158.9 (2)
C7—C4—C5—C6 179.7 (2) C10—C11—C12—N3 178.2 (2)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
N2—H2···O2i 0.92 (3) 2.13 (3) 2.945 (2) 147 (2)
O1—H1A···N3ii 0.90 (2) 1.76 (2) 2.654 (2) 168 (3)

Symmetry codes: (i) −x+1, −y, −z; (ii) x, y+1, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BT5821).

References

  1. Bruker (2002). SMART, SAINT and SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812007957/bt5821sup1.cif

e-68-0o895-sup1.cif (18.3KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812007957/bt5821Isup2.hkl

e-68-0o895-Isup2.hkl (149KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812007957/bt5821Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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