Abstract
The five-membered ring in the title imidazolidinone derivative, C11H12N2O2S, adopts an envelope conformation with the S-bound C atom being the flap atom. Overall, the molecule has a U-shaped conformation as both rings are folded towards each other [dihedral angle = 31.66 (6)°]. An eight-membered amide {⋯HNCO}2 synthon leads to hydrogen-bonded dimeric aggregates in the crystal: these are additionally linked by C—H⋯π interactions.
Related literature
For the antitumour potential of imidazolidinones, see: Abdel-Aziz et al. (2012 ▶). For ring conformational analysis, see: Cremer & Pople (1975 ▶).
Experimental
Crystal data
C11H12N2O2S
M r = 236.29
Monoclinic,
a = 7.0473 (1) Å
b = 14.3274 (3) Å
c = 10.7796 (2) Å
β = 96.921 (2)°
V = 1080.48 (3) Å3
Z = 4
Cu Kα radiation
μ = 2.56 mm−1
T = 100 K
0.35 × 0.30 × 0.25 mm
Data collection
Agilent SuperNova Dual diffractometer with Atlas detector
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.754, T max = 1.000
8437 measured reflections
2186 independent reflections
2135 reflections with I > 2σ(I)
R int = 0.015
Refinement
R[F 2 > 2σ(F 2)] = 0.028
wR(F 2) = 0.073
S = 1.01
2186 reflections
150 parameters
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.25 e Å−3
Δρmin = −0.27 e Å−3
Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶).
Supplementary Material
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812007908/bt5824sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812007908/bt5824Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812007908/bt5824Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
Cg1 is the centroid of the C6–C11 ring.
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N2—H1⋯O1i | 0.876 (19) | 2.032 (19) | 2.8989 (13) | 169.8 (17) |
| C1—H1A⋯Cg1ii | 0.98 | 2.72 | 3.6360 (13) | 155 |
Symmetry codes: (i)
; (ii)
.
Acknowledgments
This work was supported by the Research Center of Pharmacy, King Saud University, Riyadh, Saudi Arabia. We also thank the Ministry of Higher Education (Malaysia) for funding structural studies through the High-Impact Research Scheme (grant No. UM.C/HIR/MOHE/SC/12).
supplementary crystallographic information
Comment
A recent study described the anti-tumor potential of imidazolidinones (Abdel-Aziz et al., 2012). In continuation of these studies, herein, the crystal structure determination of an imidazolidinone derivative, 1-acetyl-4-(phenylthio)imidazolidin-2-one (I) is described.
The five-membered ring in (I), Fig. 1, adopts an envelope conformation with the C4 atom being the flap atom. The puckering parameters (Cremer & Pople, 1975) are Q = 0.2364 (12) Å and φ2 = 113.9 (3)°. The molecule has a U-shaped conformation whereby the five- and six-membered rings lie to the same side of the molecule and form a dihedral angle of 31.66 (6)°.
In the crystal packing, centrosymmetrically related molecules associate via N—H···O hydrogen bonds leading to the familiar eight-membered amide {···HNCO}2 synthon, Table 1. The dimers are connected into the three-dimensional architecture by C—H···π interactions, Fig. 2 and Table 1.
Experimental
At room temperature, trifluoroacetic acid (0.3 equiv.) was added drop wise to a stirred solution of 1-acetyl-4-methoxyimidazolidin-2-one (1 equiv.) and thiophenol (1 equiv.) in dry CH3CN (0.01 mol/l) over a period of 15 min. After being stirred for 2 h at room temperature, the mixture was quenched by adding ammonium chloride solution (5 ml). The product was extracted with ethylacetate, washed with brine and dried over anhydrous sodium sulfate. The product obtained after evaporation of solvent was purified by column chromatography using a mixture of hexane and CHCl3 (1:1 v/v) as eluent. Crystals were obtained by slow evaporation of the eluent solution. Yield, 96%. m.p. 383–384 K. IR (KBr, cm-1): ν 3320 (N—H), 1760, 1710 (C═ O). 1H NMR (CDCl3): δ 2.20 (s, 3H), 3.98 (m, 1H), 4.06 (m, 1H), 4.901 (m, 1H), 6.42 (s, 1H), 7.28 (d, 3H, J = 7.0 Hz), 7.45–7.46 (d, 2H, J = 5.5 Hz). 13C NMR (CDCl3): δ 23.21, 48.95, 56.17, 127.51, 129.07, 129.36, 129.46, 135.22, 155.12, 170.11.
Refinement
Carbon-bound H atoms were placed in calculated positions [C—H = 0.95 to 1.00 Å, Uiso(H) = 1.2–1.5Ueq(C)] and were included in the refinement in the riding model approximation. The H atom bonded to N was freely refined.
Figures
Fig. 1.
The molecular structure of (I) showing the atom-labelling scheme and displacement ellipsoids at the 50% probability level.
Fig. 2.
A view in projection down the a axis of the unit-cell contents for (I). The N—H···O and C—H···π interactions are shown as orange and purple dashed lines, respectively.
Crystal data
| C11H12N2O2S | F(000) = 496 |
| Mr = 236.29 | Dx = 1.453 Mg m−3 |
| Monoclinic, P21/n | Cu Kα radiation, λ = 1.5418 Å |
| Hall symbol: -P 2yn | Cell parameters from 6092 reflections |
| a = 7.0473 (1) Å | θ = 3.1–76.4° |
| b = 14.3274 (3) Å | µ = 2.56 mm−1 |
| c = 10.7796 (2) Å | T = 100 K |
| β = 96.921 (2)° | Prism, colourless |
| V = 1080.48 (3) Å3 | 0.35 × 0.30 × 0.25 mm |
| Z = 4 |
Data collection
| Agilent SuperNova Dual diffractometer with Atlas detector | 2186 independent reflections |
| Radiation source: SuperNova (Cu) X-ray Source | 2135 reflections with I > 2σ(I) |
| Mirror monochromator | Rint = 0.015 |
| Detector resolution: 10.4041 pixels mm-1 | θmax = 76.6°, θmin = 5.2° |
| ω scans | h = −8→8 |
| Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011) | k = −17→15 |
| Tmin = 0.754, Tmax = 1.000 | l = −10→13 |
| 8437 measured reflections |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.028 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.073 | H atoms treated by a mixture of independent and constrained refinement |
| S = 1.01 | w = 1/[σ2(Fo2) + (0.0413P)2 + 0.5578P] where P = (Fo2 + 2Fc2)/3 |
| 2186 reflections | (Δ/σ)max = 0.001 |
| 150 parameters | Δρmax = 0.25 e Å−3 |
| 0 restraints | Δρmin = −0.27 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| S1 | 0.90697 (4) | 0.65626 (2) | 0.40810 (3) | 0.01816 (10) | |
| O1 | 0.34661 (12) | 0.49945 (6) | 0.34757 (8) | 0.01716 (19) | |
| O2 | 0.48246 (13) | 0.61074 (6) | 0.00853 (8) | 0.0195 (2) | |
| N1 | 0.54386 (14) | 0.54954 (7) | 0.20071 (9) | 0.0138 (2) | |
| N2 | 0.67635 (15) | 0.49985 (7) | 0.38573 (9) | 0.0161 (2) | |
| C1 | 0.20799 (17) | 0.57746 (9) | 0.11228 (11) | 0.0174 (3) | |
| H1A | 0.1359 | 0.6028 | 0.0363 | 0.026* | |
| H1B | 0.1814 | 0.6146 | 0.1846 | 0.026* | |
| H1C | 0.1696 | 0.5126 | 0.1237 | 0.026* | |
| C2 | 0.41743 (17) | 0.58111 (8) | 0.10054 (10) | 0.0142 (2) | |
| C3 | 0.50542 (17) | 0.51505 (8) | 0.31596 (10) | 0.0138 (2) | |
| C4 | 0.83250 (17) | 0.54464 (9) | 0.33269 (11) | 0.0163 (2) | |
| H4 | 0.9445 | 0.5013 | 0.3399 | 0.020* | |
| C5 | 0.75037 (17) | 0.55287 (9) | 0.19467 (11) | 0.0169 (2) | |
| H5A | 0.7883 | 0.6124 | 0.1582 | 0.020* | |
| H5B | 0.7925 | 0.5003 | 0.1450 | 0.020* | |
| C6 | 0.68485 (17) | 0.71643 (8) | 0.38907 (11) | 0.0154 (2) | |
| C7 | 0.63946 (19) | 0.77629 (9) | 0.28787 (11) | 0.0192 (3) | |
| H7 | 0.7304 | 0.7878 | 0.2314 | 0.023* | |
| C8 | 0.4618 (2) | 0.81908 (9) | 0.26958 (12) | 0.0209 (3) | |
| H8 | 0.4305 | 0.8590 | 0.1997 | 0.025* | |
| C9 | 0.32924 (19) | 0.80386 (9) | 0.35317 (12) | 0.0201 (3) | |
| H9 | 0.2073 | 0.8329 | 0.3402 | 0.024* | |
| C10 | 0.37606 (18) | 0.74601 (9) | 0.45571 (11) | 0.0180 (3) | |
| H10 | 0.2862 | 0.7362 | 0.5134 | 0.022* | |
| C11 | 0.55324 (17) | 0.70240 (8) | 0.47448 (11) | 0.0158 (2) | |
| H11 | 0.5848 | 0.6632 | 0.5450 | 0.019* | |
| H1 | 0.675 (3) | 0.4930 (13) | 0.4664 (18) | 0.032 (5)* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| S1 | 0.01240 (17) | 0.02410 (18) | 0.01774 (16) | −0.00284 (10) | 0.00085 (11) | −0.00434 (11) |
| O1 | 0.0171 (5) | 0.0213 (4) | 0.0130 (4) | −0.0053 (3) | 0.0016 (3) | 0.0022 (3) |
| O2 | 0.0216 (5) | 0.0235 (5) | 0.0139 (4) | −0.0003 (4) | 0.0039 (3) | 0.0045 (3) |
| N1 | 0.0132 (5) | 0.0171 (5) | 0.0112 (4) | −0.0003 (4) | 0.0018 (4) | 0.0004 (4) |
| N2 | 0.0167 (5) | 0.0189 (5) | 0.0121 (5) | 0.0000 (4) | −0.0005 (4) | 0.0016 (4) |
| C1 | 0.0154 (6) | 0.0203 (6) | 0.0163 (5) | 0.0016 (5) | 0.0003 (4) | 0.0031 (4) |
| C2 | 0.0178 (6) | 0.0123 (5) | 0.0122 (5) | 0.0004 (4) | 0.0003 (4) | −0.0004 (4) |
| C3 | 0.0181 (6) | 0.0112 (5) | 0.0117 (5) | −0.0011 (4) | 0.0004 (4) | −0.0010 (4) |
| C4 | 0.0141 (6) | 0.0199 (6) | 0.0145 (5) | 0.0016 (4) | 0.0003 (4) | −0.0017 (4) |
| C5 | 0.0132 (6) | 0.0239 (6) | 0.0137 (5) | 0.0005 (5) | 0.0013 (4) | −0.0024 (5) |
| C6 | 0.0152 (6) | 0.0160 (6) | 0.0148 (5) | −0.0041 (4) | 0.0018 (4) | −0.0045 (4) |
| C7 | 0.0252 (7) | 0.0177 (6) | 0.0158 (6) | −0.0051 (5) | 0.0065 (5) | −0.0022 (4) |
| C8 | 0.0300 (7) | 0.0150 (6) | 0.0170 (6) | −0.0016 (5) | −0.0001 (5) | 0.0010 (5) |
| C9 | 0.0189 (6) | 0.0175 (6) | 0.0231 (6) | 0.0004 (5) | −0.0006 (5) | −0.0038 (5) |
| C10 | 0.0179 (6) | 0.0189 (6) | 0.0178 (6) | −0.0042 (5) | 0.0046 (5) | −0.0045 (5) |
| C11 | 0.0187 (6) | 0.0159 (6) | 0.0128 (5) | −0.0046 (5) | 0.0015 (4) | −0.0015 (4) |
Geometric parameters (Å, º)
| S1—C6 | 1.7771 (13) | C4—H4 | 1.0000 |
| S1—C4 | 1.8413 (13) | C5—H5A | 0.9900 |
| O1—C3 | 1.2290 (15) | C5—H5B | 0.9900 |
| O2—C2 | 1.2181 (14) | C6—C7 | 1.3943 (18) |
| N1—C3 | 1.3936 (14) | C6—C11 | 1.3978 (16) |
| N1—C2 | 1.3902 (15) | C7—C8 | 1.3864 (19) |
| N1—C5 | 1.4654 (15) | C7—H7 | 0.9500 |
| N2—C3 | 1.3586 (16) | C8—C9 | 1.3913 (18) |
| N2—C4 | 1.4496 (15) | C8—H8 | 0.9500 |
| N2—H1 | 0.876 (19) | C9—C10 | 1.3891 (18) |
| C1—C2 | 1.4975 (16) | C9—H9 | 0.9500 |
| C1—H1A | 0.9800 | C10—C11 | 1.3891 (18) |
| C1—H1B | 0.9800 | C10—H10 | 0.9500 |
| C1—H1C | 0.9800 | C11—H11 | 0.9500 |
| C4—C5 | 1.5346 (16) | ||
| C6—S1—C4 | 99.80 (6) | N1—C5—C4 | 102.41 (9) |
| C3—N1—C2 | 129.24 (10) | N1—C5—H5A | 111.3 |
| C3—N1—C5 | 110.61 (10) | C4—C5—H5A | 111.3 |
| C2—N1—C5 | 120.12 (10) | N1—C5—H5B | 111.3 |
| C3—N2—C4 | 112.04 (10) | C4—C5—H5B | 111.3 |
| C3—N2—H1 | 116.8 (12) | H5A—C5—H5B | 109.2 |
| C4—N2—H1 | 122.8 (12) | C7—C6—C11 | 119.73 (12) |
| C2—C1—H1A | 109.5 | C7—C6—S1 | 120.30 (9) |
| C2—C1—H1B | 109.5 | C11—C6—S1 | 119.96 (10) |
| H1A—C1—H1B | 109.5 | C8—C7—C6 | 120.09 (11) |
| C2—C1—H1C | 109.5 | C8—C7—H7 | 120.0 |
| H1A—C1—H1C | 109.5 | C6—C7—H7 | 120.0 |
| H1B—C1—H1C | 109.5 | C7—C8—C9 | 120.26 (12) |
| O2—C2—N1 | 118.50 (11) | C7—C8—H8 | 119.9 |
| O2—C2—C1 | 123.53 (11) | C9—C8—H8 | 119.9 |
| N1—C2—C1 | 117.97 (10) | C8—C9—C10 | 119.68 (12) |
| O1—C3—N2 | 126.42 (10) | C8—C9—H9 | 120.2 |
| O1—C3—N1 | 126.36 (11) | C10—C9—H9 | 120.2 |
| N2—C3—N1 | 107.20 (10) | C11—C10—C9 | 120.49 (11) |
| N2—C4—C5 | 101.59 (9) | C11—C10—H10 | 119.8 |
| N2—C4—S1 | 113.57 (8) | C9—C10—H10 | 119.8 |
| C5—C4—S1 | 114.55 (9) | C10—C11—C6 | 119.70 (11) |
| N2—C4—H4 | 108.9 | C10—C11—H11 | 120.1 |
| C5—C4—H4 | 108.9 | C6—C11—H11 | 120.1 |
| S1—C4—H4 | 108.9 | ||
| C3—N1—C2—O2 | 178.27 (11) | C3—N1—C5—C4 | −16.59 (12) |
| C5—N1—C2—O2 | 0.41 (17) | C2—N1—C5—C4 | 161.64 (10) |
| C3—N1—C2—C1 | −1.26 (18) | N2—C4—C5—N1 | 23.05 (12) |
| C5—N1—C2—C1 | −179.12 (10) | S1—C4—C5—N1 | −99.80 (10) |
| C4—N2—C3—O1 | −167.06 (11) | C4—S1—C6—C7 | −95.17 (10) |
| C4—N2—C3—N1 | 14.33 (13) | C4—S1—C6—C11 | 83.57 (10) |
| C2—N1—C3—O1 | 5.9 (2) | C11—C6—C7—C8 | −2.31 (18) |
| C5—N1—C3—O1 | −176.12 (11) | S1—C6—C7—C8 | 176.44 (9) |
| C2—N1—C3—N2 | −175.53 (11) | C6—C7—C8—C9 | 1.12 (19) |
| C5—N1—C3—N2 | 2.49 (13) | C7—C8—C9—C10 | 0.44 (19) |
| C3—N2—C4—C5 | −23.91 (13) | C8—C9—C10—C11 | −0.80 (19) |
| C3—N2—C4—S1 | 99.60 (10) | C9—C10—C11—C6 | −0.39 (18) |
| C6—S1—C4—N2 | −55.80 (9) | C7—C6—C11—C10 | 1.94 (18) |
| C6—S1—C4—C5 | 60.32 (9) | S1—C6—C11—C10 | −176.81 (9) |
Hydrogen-bond geometry (Å, º)
Cg1 is the centroid of the C6–C11 ring.
| D—H···A | D—H | H···A | D···A | D—H···A |
| N2—H1···O1i | 0.876 (19) | 2.032 (19) | 2.8989 (13) | 169.8 (17) |
| C1—H1A···Cg1ii | 0.98 | 2.72 | 3.6360 (13) | 155 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) x−1/2, −y+1/2, z−1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BT5824).
References
- Abdel-Aziz, A. A.-M., El-Azab, A. S., El-Subbagh, H. I., Al-Obaid, A. M., Alanazi, A. M. & Al-Omar, M. A. (2012). Bioorg. Med. Chem. Lett. 22, 2008–2014. [DOI] [PubMed]
- Agilent (2011). CrysAlis PRO Agilent Technologies, Yarnton, Oxfordshire, England.
- Brandenburg, K. (2006). DIAMOND Crystal Impact GbR, Bonn, Germany.
- Cremer, D. & Pople, J. A. (1975). J. Am. Chem. Soc. 97, 1354–1358.
- Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812007908/bt5824sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812007908/bt5824Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812007908/bt5824Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


