Abstract
A temperature-sensitive mutant of Escherichia coli affected in the alpha subunit of RNA polymerase has been investigated. Gene mapping and complementation experiments placed the mutation to temperature-sensitivity within the alpha operon at 72 min. on the bacterial chromosome. The rate of RNA synthesis in vivo and the accumulation of ribosomal RNA were significantly reduced in the mutant at 44 degrees C. The thermostability at 44 degrees C of the purified holoenzyme from mutant cells was about 20% of that of the normal enzyme. Assays with T7 DNA as a template showed that the fraction of active enzyme competent for transcription was reduced as a function of assay temperature but that initiation and elongation were not significantly affected by the alpha mutation. A major effect on the fidelity of transcription was observed with the mutant enzyme, with misincorporation on two different templates stimulated about 4 fold at 37 degrees C. The role of the alpha dimer in the structure and function of RNA polymerase is discussed.
Full text
PDF





Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Bradford M. M. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem. 1976 May 7;72:248–254. doi: 10.1016/0003-2697(76)90527-3. [DOI] [PubMed] [Google Scholar]
- Chamberlain J. P. Fluorographic detection of radioactivity in polyacrylamide gels with the water-soluble fluor, sodium salicylate. Anal Biochem. 1979 Sep 15;98(1):132–135. doi: 10.1016/0003-2697(79)90716-4. [DOI] [PubMed] [Google Scholar]
- Chamberlin M. J., Nierman W. C., Wiggs J., Neff N. A quantitative assay for bacterial RNA polymerases. J Biol Chem. 1979 Oct 25;254(20):10061–10069. [PubMed] [Google Scholar]
- Champney W. S. Localized mutagenesis for the isolation of temperature-sensitive mutants of Escherichia coli affected in protein synthesis. Genetics. 1979 Feb;91(2):215–227. doi: 10.1093/genetics/91.2.215. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Champney W. S. Protein synthesis defects in temperature-sensitive mutants of Escherichia coli with altered ribosomal proteins. Biochim Biophys Acta. 1980 Oct 17;609(3):464–474. doi: 10.1016/0005-2787(80)90120-3. [DOI] [PubMed] [Google Scholar]
- Fiandt M., Szybalski W., Blattner F. R., Jaskunas S. R., Lindahl L., Nomura M. Organization of ribosomal protein genes in Escherichia coli. I. Physical structure of DNA from transducing lambda phages carrying genes from the aroE-str region. J Mol Biol. 1976 Sep 25;106(3):817–835. doi: 10.1016/0022-2836(76)90267-9. [DOI] [PubMed] [Google Scholar]
- Fujiki H., Palm P., Zillig W., Calendar R., Sunshine M. Identification of a mutation within the structural gene for the a subunit of DNA-dependent RNA polymerase of E. coli. Mol Gen Genet. 1976 Apr 23;145(1):19–22. doi: 10.1007/BF00331552. [DOI] [PubMed] [Google Scholar]
- Fukuda R., Ishihama A., Saitoh T., Taketo M. Comparative studies of RNA polymerase subunits from various bacteria. Mol Gen Genet. 1977 Jul 20;154(2):135–144. doi: 10.1007/BF00330829. [DOI] [PubMed] [Google Scholar]
- Garrett S., Silhavy T. J. Isolation of mutations in the alpha operon of Escherichia coli that suppress the transcriptional defect conferred by a mutation in the porin regulatory gene envZ. J Bacteriol. 1987 Apr;169(4):1379–1385. doi: 10.1128/jb.169.4.1379-1385.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Gegenheimer P., Watson N., Apirion D. Multiple pathways for primary processing of ribosomal RNA in Escherichia coli. J Biol Chem. 1977 May 10;252(9):3064–3073. [PubMed] [Google Scholar]
- Giffard P. M., Rowland G. C., Kroll R. G., Stewart L. M., Bakker E. P., Booth I. R. Phenotypic properties of a unique rpoA mutation (phs) of Escherichia coli. J Bacteriol. 1985 Nov;164(2):904–910. doi: 10.1128/jb.164.2.904-910.1985. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Gross C., Engbaek F., Flammang T., Burgess R. Rapid micromethod for the purification of Escherichia coli ribonucleic acid polymerase and the preparation of bacterial extracts active in ribonucleic acid synthesis. J Bacteriol. 1976 Oct;128(1):382–389. doi: 10.1128/jb.128.1.382-389.1976. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ishihama A., Shimamoto N., Aiba H., Kawakami K., Nashimoto H., Tsugawa A., Uchida H. Temperature-sensitive mutations in the alpha subunit gene of Escherichia coli RNA polymerase. J Mol Biol. 1980 Feb 25;137(2):137–150. doi: 10.1016/0022-2836(80)90321-6. [DOI] [PubMed] [Google Scholar]
- Ishihama A. Subunits of ribonucleic acid polymerase in function and structure. I. Reversible dissociations of Escherichia coli ribonucleic acid polymerase. Biochemistry. 1972 Mar 28;11(7):1250–1258. doi: 10.1021/bi00757a021. [DOI] [PubMed] [Google Scholar]
- Jaskunas S. R., Burgess R. R., Nomura M. Identification of a gene for the alpha-subunit of RNA polymerase at the str-spc region of the Escherichia coli chromosome. Proc Natl Acad Sci U S A. 1975 Dec;72(12):5036–5040. doi: 10.1073/pnas.72.12.5036. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Jin D. J., Gross C. A. Mapping and sequencing of mutations in the Escherichia coli rpoB gene that lead to rifampicin resistance. J Mol Biol. 1988 Jul 5;202(1):45–58. doi: 10.1016/0022-2836(88)90517-7. [DOI] [PubMed] [Google Scholar]
- Jin D. J., Walter W. A., Gross C. A. Characterization of the termination phenotypes of rifampicin-resistant mutants. J Mol Biol. 1988 Jul 20;202(2):245–253. doi: 10.1016/0022-2836(88)90455-x. [DOI] [PubMed] [Google Scholar]
- Kawakami K., Ishihama A. Defective assembly of ribonucleic acid polymerase subunits in a temperature-sensitive alpha-subunit mutant of Escherichia coli. Biochemistry. 1980 Jul 22;19(15):3491–3495. doi: 10.1021/bi00556a013. [DOI] [PubMed] [Google Scholar]
- Laemmli U. K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature. 1970 Aug 15;227(5259):680–685. doi: 10.1038/227680a0. [DOI] [PubMed] [Google Scholar]
- Lowe P. A., Hager D. A., Burgess R. R. Purification and properties of the sigma subunit of Escherichia coli DNA-dependent RNA polymerase. Biochemistry. 1979 Apr 3;18(7):1344–1352. doi: 10.1021/bi00574a034. [DOI] [PubMed] [Google Scholar]
- Matsuyama S., Mizushima S. Novel rpoA mutation that interferes with the function of OmpR and EnvZ, positive regulators of the ompF and ompC genes that code for outer-membrane proteins in Escherichia coli K12. J Mol Biol. 1987 Jun 20;195(4):847–853. doi: 10.1016/0022-2836(87)90489-x. [DOI] [PubMed] [Google Scholar]
- Riftina F., DeFalco E., Krakow J. S. Monoclonal antibodies as probes of the topological arrangement of the alpha subunits of Escherichia coli RNA polymerase. Biochemistry. 1989 Apr 18;28(8):3299–3305. doi: 10.1021/bi00434a027. [DOI] [PubMed] [Google Scholar]
- Rowland G. C., Giffard P. M., Booth I. R. phs Locus of Escherichia coli, a mutation causing pleiotropic lesions in metabolism, is an rpoA allele. J Bacteriol. 1985 Nov;164(2):972–975. doi: 10.1128/jb.164.2.972-975.1985. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Scherer G. E., Walkinshaw M. D., Arnott S. A computer aided oligonucleotide analysis provides a model sequence for RNA polymerase-promoter recognition in E.coli. Nucleic Acids Res. 1978 Oct;5(10):3759–3773. doi: 10.1093/nar/5.10.3759. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Stark M. J., Gourse R. L., Dahlberg A. E. Site-directed mutagenesis of ribosomal RNA. Analysis of ribosomal RNA deletion mutants using maxicells. J Mol Biol. 1982 Aug 15;159(3):417–439. doi: 10.1016/0022-2836(82)90292-3. [DOI] [PubMed] [Google Scholar]
- Stender W. Antibodies against the subunits of E. coli RNA polymerase as probes for subunit-specific binding of DNA and other ligands. Nucleic Acids Res. 1980 Mar 25;8(6):1405–1420. doi: 10.1093/nar/8.6.1405. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Stender W. Inhibition of E. coli RNA polymerase by Fab fragments from subunit specific antibodies. Biochem Biophys Res Commun. 1981 May 15;100(1):198–204. doi: 10.1016/s0006-291x(81)80082-4. [DOI] [PubMed] [Google Scholar]
- Sunshine M. G., Sauer B. A bacterial mutation blocking P2 phage late gene expression. Proc Natl Acad Sci U S A. 1975 Jul;72(7):2770–2774. doi: 10.1073/pnas.72.7.2770. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wada M., Fujita H., Itikawa H. Genetic suppression of a temperature-sensitive groES mutation by an altered subunit of RNA polymerase of Escherichia coli K-12. J Bacteriol. 1987 Mar;169(3):1102–1106. doi: 10.1128/jb.169.3.1102-1106.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
