How Rho-GEFs and Rho GTPases regulate division-site selection during cytokinesis in fission yeast is unknown. The Rho-GEF Gef2 interacts with the anillin Mid1 to regulate contractile-ring positioning and assembly in coordination with the polo kinase Plo1. In addition, Gef2 is involved in contractile-ring stability and disassembly.
Abstract
Cytokinesis is crucial for integrating genome inheritance and cell functions. In multicellular organisms, Rho-guanine nucleotide exchange factors (GEFs) and Rho GTPases are key regulators of division-plane specification and contractile-ring formation during cytokinesis, but how they regulate early steps of cytokinesis in fission yeast remains largely unknown. Here we show that putative Rho-GEF Gef2 and Polo kinase Plo1 coordinate to control the medial cortical localization and function of anillin-related protein Mid1. The division-site positioning defects of gef2∆ plo1-ts18 double mutant can be partially rescued by increasing Mid1 levels. We find that Gef2 physically interacts with the Mid1 N-terminus and modulates Mid1 cortical binding. Gef2 localization to cortical nodes and the contractile ring depends on its last 145 residues, and the DBL-homology domain is important for its function in cytokinesis. Our data suggest the interaction between Rho-GEFs and anillins is an important step in the signaling pathways during cytokinesis. In addition, Gef2 also regulates contractile-ring function late in cytokinesis and may negatively regulate the septation initiation network. Collectively, we propose that Gef2 facilitates and stabilizes Mid1 binding to the medial cortex, where the localized Mid1 specifies the division site and induces contractile-ring assembly.
INTRODUCTION
Cytokinesis, the last stage of the cell cycle, partitions a mother cell into two daughter cells. Cytokinesis requires coordination of four key events: division-plane selection, contractile-ring assembly, constriction and disassembly of the contractile ring, and plasma membrane fusion and daughter-cell separation (Balasubramanian et al., 2004; Barr and Gruneberg, 2007; Pollard and Wu, 2010). The last step involves septum formation in fungi and midbody formation in animal cells. To ensure that daughter cells faithfully inherit chromosomes from mother cells, cytokinesis must be tightly spatiotemporally controlled and coordinated with mitosis (Storchova and Pellman, 2004). Cytokinesis failure leads to genomic instability and tumorigenesis (Fujiwara et al., 2005; Sagona and Stenmark, 2010).
In animal cells signals from the central spindle/spindle midzone, astral microtubules, or both are required to ensure that cytokinetic events occur properly on the cell cortex (Bringmann and Hyman, 2005; Cabernard et al., 2010). Many studies have shown that the Polo kinase/Rho‑guanine nucleotide exchange factor (GEF)/Rho GTPase module regulates the signaling from the central spindle to the cortex to trigger contractile-ring assembly and cytokinesis (Petronczki et al., 2008). At anaphase, the conserved Polo kinase promotes the complex formation of Cyk‑4/MgcRacGAP/RacGAP50C, a subunit of the centralspindlin complex, and Ect2/Pebble, a Rho-GEF (Petronczki et al., 2007; Wolfe et al., 2009). Binding of Ect2 to Cyk-4 recruits Ect2 to the division site (Somers and Saint, 2003; Yüce et al., 2005; Zhao and Fang, 2005; Nishimura and Yonemura, 2006). This determines the cleavage plane by locally activating GTPase RhoA, which in turn recruits and activates downstream effectors, such as anillin, nonmuscle myosin-II, and actin nucleator formin, eventually leading to contractile-ring formation and cleavage-furrow ingression (Hall, 1998; Shandala et al., 2004; Gregory et al., 2008; Hickson and O'Farrell, 2008; Piekny and Glotzer, 2008; Piekny and Maddox, 2010). The Polo/GEF/Rho module is also conserved in the budding yeast Saccharomyces cerevisiae, in which Polo kinase Cdc5 phosphorylates and recruits Rho-GEF Tus1 to the bud neck (Yoshida et al., 2006). The Rho-GEF promotes Rho1 recruitment and activation and consequently induces actomyosin-ring formation and cytokinesis (Tolliday et al., 2002; Yoshida et al., 2006).
Cells of the fission yeast Schizosaccharomyces pombe are rod shaped and divide by medial fission. The anillin-like protein Mid1 and its regulators Polo kinase Plo1 and DYRK kinase Pom1 specify the division site in fission yeast (Almonacid and Paoletti, 2010). During interphase, Mid1 shuttles between the nucleus and interphase nodes on the plasma membrane near the nucleus (Sohrmann et al., 1996; Bähler et al., 1998a; Paoletti and Chang, 2000). Nodes refer to discrete protein clusters (20–65) on the equatorial plasma membrane (Wu et al., 2006; Laporte et al., 2010, 2011). Pom1 kinase forms a polar gradient on the plasma membrane and confines Mid1 to the cell middle through Cdr2 kinase (Celton-Morizur et al., 2006; Padte et al., 2006; Huang et al., 2007; Almonacid et al., 2009; Martin and Berthelot-Grosjean, 2009; Moseley et al., 2009; Hachet et al., 2011). Cdr2 establishes interphase nodes by recruiting Cdr1 kinase, Mid1, Blt1, Rho-GEF Gef2, kinesin-like protein Klp8, and Wee1 kinase (Breeding et al., 1998; Morrell et al., 2004; Martin and Berthelot-Grosjean, 2009; Moseley et al., 2009). The Pom1 gradient and interphase nodes coordinate to regulate cell size and mitotic entry (Martin and Berthelot-Grosjean, 2009; Moseley et al., 2009; Hachet et al., 2011). Besides Cdr2's role in recruiting Mid1 by binding to its N-terminus (Almonacid et al., 2009), functions of other interphase-node proteins in cytokinesis are unknown. At G2/M transition, Mid1 is phosphorylated by Plo1 at multiple sites and completely exits from the nucleus to form cytokinesis nodes at cell equator (Bähler et al., 1998a; Paoletti and Chang, 2000; Almonacid et al., 2011).
Mid1 in cytokinesis nodes recruits essential contractile-ring components, IQGAP Rng2, myosin-II (heavy chain Myo2 and light chains Cdc4 and Rlc1), F-BAR protein Cdc15, and the formin Cdc12 to form mature cytokinesis nodes, the precursors of the contractile ring (Wu et al., 2003, 2006; Almonacid et al., 2011; Laporte et al., 2011; Padmanabhan et al., 2011). Cdc12 nucleates the majority of actin filaments for contractile-ring formation (Kovar et al., 2003; Coffman et al., 2009). The nodes condense into a compact contractile ring by interactions between actin filaments and myosin-II through a search, capture, pull, and release mechanism at early mitosis (Bähler et al., 1998a; Wu et al., 2006; Vavylonis et al., 2008; Coffman et al., 2009; Laporte et al., 2011; Ojkic et al., 2011). The ring matures by increasing Cdc15 concentration and by recruiting other components during anaphase B under the regulation of the septation initiation network (SIN) pathway (Wu et al., 2003; Wu and Pollard, 2005; Hachet and Simanis, 2008; Huang et al., 2008). At the onset of ring constriction after spindle breakdown, Mid1 disappears from the contractile ring and returns to the nucleus and then to interphase nodes (Paoletti and Chang, 2000; Wu et al., 2003). Although Mid1 is essential for division-site positioning and cytokinesis-node formation, it is not essential for contractile-ring formation. Without Mid1, the Plo1-activated SIN pathway is required for ring assembly (Hachet and Simanis, 2008; Huang et al., 2008), although this pathway is involved in ring maturation in mid1+ cells (Wu et al., 2003). While the Mid1-independent pathway is capable of ring formation, it is far less efficient than the Mid1-dependent pathway and cannot position the division plane correctly. Plo1 is involved in both pathways for ring assembly, suggesting that Plo1 is a key regulator in cytokinesis. However, whether Rho-GEFs and Rho GTPases regulate division-site selection and contractile-ring assembly in S. pombe remains largely unknown.
S. pombe contains six Rho GTPases (Cdc42 and Rho1–5) and seven Rho GEFs (Scd1, Gef1–3, and Rgf1–3). Cdc42 mainly controls cell polarity, and Scd1 and Gef1 induce its activation (Coll et al., 2003; Hirota et al., 2003). Rho1 is a regulatory subunit of (1,3)-β-d-glucan synthase and regulates cell wall/septum formation, as well as cell polarization. Rho1 is activated by Rgf1–3 (Tajadura et al., 2004; Morrell-Falvey et al., 2005; Mutoh et al., 2005; Garcia et al., 2006, 2009a, 2009b; Wu et al., 2010). Rho2 and Rho5 are also involved in cell wall/septum formation (Calonge et al., 2000; Nakano et al., 2005). Rho3 modulates exocytosis and cell polarity (Nakano et al., 2002; Wang et al., 2003). Rho4 regulates septum degradation (Santos et al., 2005). Although Rgf3 might be involved in contractile-ring assembly (Mutoh et al., 2005), no Rho-GEFs and Rho GTPases have been shown to play a role in division-site positioning. The functions of Gef2 and Gef3 are unknown, but the localization of Gef2 in cortical nodes and the contractile ring implies that Gef2 might play a role in early cytokinesis (Iwaki et al., 2003; Moseley et al., 2009).
In this study, we find that putative Rho-GEF Gef2 is involved in division-site and contractile-ring positioning by interacting with anillin-related protein Mid1. This function overlaps with that of Polo kinase Plo1. In addition, Gef2 also stabilizes the contractile ring during its constriction. Thus the Rho-GEF does have a function in early stages of cytokinesis in fission yeast.
RESULTS
Putative Rho-GEF Gef2 and Polo kinase Plo1 coordinate to regulate division-site and contractile-ring positioning
We hypothesized that functional redundancy is responsible for the lack of obvious phenotypes of Rho-GEF mutants in early stages of cytokinesis (see Introduction). To elucidate this overlapping function, synthetic interactions between Rho-GEF mutants (rgf1Δ, rgf2Δ, 81nmt1-rgf3, gef1Δ, and gef2Δ) and mutations that affect early stages of cytokinesis were investigated. We found that gef2∆ had synthetic negative interactions with plo1, mid1, cdc4-8, rng2-D5, and myo2-E1 mutants. Among these interactions, gef2∆ showed strongest synthetic defects with plo1-ts18 and mid1 mutants, which were chosen for further studies.
gef2∆ cells resembled wild-type (wt) cells with a septum at the cell center and perpendicular to the cell long axis during cytokinesis, as reported (Iwaki et al., 2003). In this study, we defined a septum formed within the central 20% of the cell as a normal septum (Figure 1, A and B). At 25°C, 7% cells with abnormal septa were observed (Figure 1, A and B) in plo1-ts18 mutant, which has a mutation in the kinase domain and severe defects in division-site positioning and contractile-ring assembly at 36°C (MacIver et al., 2003). In contrast, ∼95% gef2∆ plo1-ts18 double-mutant cells formed abnormal septa at 25°C, many septa were aberrant or even parallel to the cell long axis (Figure 1, A and B). Similar results were observed in the double mutants of gef2∆ and other plo1 temperature-sensitive alleles at 32°C (Supplemental Figure S1).
Because septum formation is guided by the contractile ring, we wondered whether the contractile ring was also defective in gef2∆ plo1-ts18 mutant. Myosin-II heavy chain Myo2 and light chain Rlc1, F-BAR protein Cdc15, and actin filament marker green fluorescent protein–calponin homology domain of IQGAP Rng2 (GFP-CHD; Wachtler et al., 2003; Karagiannis et al., 2005; Martin and Chang, 2006) were used to observe ring formation, and spindle pole body (SPB) protein Sad1 and α-tubulin Atb2 (Sato et al., 2009) were used to monitor cell-cycle stages (Figure 1, C–F). All wt and gef2∆ cells and majority of plo1-ts18 cells formed cytokinesis nodes at G2/M transition and contractile rings before anaphase B at the cell equator (Figure 1, C and D, and Supplemental Videos S1–S3). Consistent with previous studies (Wu et al., 2003, 2006; Laporte et al., 2011), Myo2 appeared as a broad band of precursor nodes 5.9 ± 1.8 min before SPB separation in wt cells, which condensed into a compact ring without lagging nodes 20.2 ± 2.1 min after its appearance (Figure 1, D–F). Both gef2∆ and plo1-ts18 mutants showed a small but significant delay in Myo2 node recruitment, which appeared at 1.6 ± 1.5 min (p < 0.001) and 2.1 ± 3.2 min (p < 0.001) before SPB separation, respectively. The compact-ring formation took 19.3 ± 3.4 min (p = 0.16) in gef2∆ and 28.0 ± 5.4 min (p < 0.001) in plo1-ts18 (Figure 1, D–F). In contrast, no nodes were detected in gef2∆ plo1-ts18 cells (Figure 1, C and D). Myo2 signal appeared at random location ∼7.3 ± 7.0 min (p < 0.001 compared with wt) after SPB separation and then formed aberrant filaments (Figure 1E). Some of the filaments could eventually form a misplaced contractile ring after a long delay (Figure 1, C and D, and Supplemental Video S4), but many cells failed to assemble the ring. Similar results were obtained in time-lapse movies using strains expressing monomeric yellow fluorescent protein (mYFP)–Cdc15 and CFP-Atb2. plo1-ts18 cells were defective in mitotic spindle (Figure 1, C and D, and unpublished data). However, from 19 to 32°C, gef2∆ had no obvious synthetic interaction with cold-sensitive β-tubulin mutant nda3-KM311, which blocks the spindle formation at the restrictive temperature (Hiraoka et al., 1984). Thus the synthetic phenotype of gef2∆ plo1-ts18 cells is not caused by defective spindle. Together, Gef2 is involved in division-site positioning and contractile-ring assembly, but these roles are masked by the dominant functions of Polo kinase Plo1.
Several proteins, including Blt1 and kinesin-like protein Klp8, also localize to interphase nodes similar to Gef2 (Moseley et al., 2009). We wondered whether these proteins are required for division-site positioning in the sensitized plo1-mutant background. plo1-ts18 had no obvious synthetic defects in septum positioning with klp8∆. Nine percent of blt1∆ plo1-ts18 (n = 273 septating cells) and 55% of cdr2∆ plo1-ts18 (n = 231) cells displayed abnormal septa at 25°C. In addition, unlike cdr2∆, gef2∆ cells showed small defects in cell-size control since its length at septation was 14.6 ± 0.9 μm (n = 100 cells) compared with 13.7 ± 0.9 μm of wt cells (n = 105) and ∼20 μm of cdr2∆ cells (Martin and Berthelot-Grosjean, 2009; Moseley et al., 2009). Therefore Gef2 and to a lesser degree Cdr2, but not Blt1 or Klp8, are critical for division-site specification in the plo1-mutant background.
Mid1 localization and dynamics are regulated by both Gef2 and Plo1
The defects in division-site positioning and contractile-ring formation of gef2∆ plo1-ts18 mutant were reminiscent of the mid1-mutant phenotypes (Chang et al., 1996; Sohrmann et al., 1996; Bähler et al., 1998a; Paoletti and Chang, 2000). To explore the molecular mechanism of the defects in gef2∆ plo1-ts18 mutant, we examined Mid1-monomeric enhanced GFP (mEGFP) or Mid1-monomeric enhanced Citrine (mECitrine; a YFP variant) localization and dynamics in wt, gef2∆, plo1-ts18, and gef2∆ plo1-ts18 mutants with or without the Cdr2 kinase (Figure 2, A–E). The defects did not seem to be caused by Mid1 protein levels because Mid1 global concentrations in these mutants were not dramatically different from that in wt cells (Figure 2C and Supplemental Figure S2). During interphase, Mid1 localized to the nucleus and interphase nodes in the three mutants, similar in distribution and intensity to those of wt (Figure 2, A and C, and unpublished data).
At G2/M transition, nuclear Mid1 disappeared, whereas the cortical Mid1 nodes increased in intensity and coalesced into a ring in wt and gef2∆ cells (Figure 2, A, B, and D, and Supplemental Video S5). Plo1 phosphorylates Mid1 and regulates its nuclear export (Bähler et al., 1998a; Almonacid et al., 2011). plo1-ts18 cells were defective in Mid1 nuclear export, but they still formed cytokinesis nodes and contractile ring at cell center at 25°C, although the Mid1 concentration in the nodes was reduced twofold compared to those in wt and gef2∆ cells (Figure 2, A and D, and Supplemental Videos S5 and S6). As expected, in gef2∆ and plo1-ts18 single mutants, myosin-II light-chain Rlc1 colocalized with Mid1 at nodes and the contractile ring at the cell equator during early mitosis (Figure 2A and Supplemental Video S5). However, no Mid1 and Rlc1 colocalization was observed in gef2∆ plo1-ts18 cells. Mid1 nodes failed to condense into a compact ring during mitosis, whereas Rlc1 appeared randomly in the cytoplasm and then formed aberrant filamentous structures or tilted ring (Figure 2A and Supplemental Video S5). In cdr2∆ gef2∆ plo1-ts18 cells, Mid1 remained in the nucleus (with similar concentration to plo1-ts18 cells) and cytoplasm, the Mid1 ring was abolished, and Mid1 concentration in cytokinesis nodes was only ∼10% of that in wt (Figure 2, B and D, and Supplemental Video S7), indicating that the cortical nodes in gef2∆ plo1-ts18 cells are mainly Cdr2-dependent interphase nodes. Thus the division-site positioning and contractile-ring formation defects of gef2∆ plo1-ts18 cells could be due to the failure of Mid1 recruitment to the plasma membrane at G2/M transition.
Next we tested whether Gef2 regulates Mid1 dynamics and stability on the plasma membrane, using fluorescence recovery after photobleaching (FRAP). Mid1 in interphase nodes was more dynamic in gef2∆, with a half-time of recovery 97 ± 71 s, compared with 184 ± 100 s in wt (Figure 2E; p = 0.04). Although the dynamics of Mid1 in cytokinesis nodes was not significantly affected in gef2∆ cells (Figure 2E; p = 0.68), the mobile fraction of Mid1 in gef2∆, 40 ± 15%, was significantly higher than that in wt, 29 ± 14% (Figure 2E; p = 0.04). Moreover, immunoprecipitation (IP) of fission yeast extracts revealed that Mid1 interacted with Gef2; deletion of Cdr2 reduced but did not block the interaction (Figure 2F). Together these results suggest that Gef2 might modulate Mid1 cortical binding by physical interactions.
Mid1 overexpression or artificial targeting of Mid1 to cortical nodes partially rescues gef2∆ plo1-ts18 defects in division-site positioning
We hypothesized that both Gef2 and Plo1 regulate Mid1 localization to cortical nodes, Plo1 phosphorylates Mid1 to promote its nuclear export (Bähler et al., 1998a; Almonacid et al., 2011), and Gef2 facilitates and stabilizes Mid1 cortical anchoring. In gef2∆ plo1-ts18 cells, the additive defects reduce Mid1 level in cortical nodes (Figure 2, B and D) and result in failures to recruit downstream ring components to the cell equator. If so, increasing Mid1 expression or Mid1 concentration in nodes was predicted to suppress the defects in gef2∆ plo1-ts18 cells. We created gef2∆ plo1-ts18 strains containing either an extra copy of the mid1+ gene (Celton-Morizur et al., 2004) or endogenous mid1+ under the control of inducible urg1 promoter (Watt et al., 2008). As expected, both two mid1+ copies and Purg1 induced Mid1 overexpression partially rescued the septum-positioning defects of gef2∆ plo1-ts18 mutant, and normal septum positioning was restored to 30 and 50% from ∼8%, respectively (Figure 3A). Consistently, mitotic gef2∆ plo1-ts18 cells (with mitotic spindle) containing the Mid1 ring increased from <3 to 24% when two copies of Mid1 were expressed (Figure 3B).
Furthermore, we tested whether artificially targeting Mid1 to medial cortical nodes rescues the defects of gef2∆ plo1-ts18. We fused Cdr2-mEGFP to the C-terminus of Mid1 under native mid1 promoter and integrated it at the mid1 locus. The fusion protein localized to the medial cortical nodes as expected, and the signal was much stronger than wt Mid1 at nodes but much weaker in the nucleus in gef2∆ plo1-ts18 cells (Figure 3C). Of interest, Mid1-Cdr2-mEGFP also partially rescued the defects of gef2∆ plo1-ts18 mutant; 17% of cells displayed normal septum positioning (Figure 3C). Collectively, these results suggest that the defect in gef2∆ plo1-ts18 mutant is indeed caused by the lack of sufficient functional Mid1 in cortical nodes (see Discussion).
Gef2 interacts with Mid1 N-terminus and is essential for its cortical localization
It is known that Mid1 is targeted to the plasma membrane using two independent mechanisms: one involves an amphipathic helix and the adjacent polybasic nuclear localization sequence (NLS) at its C-terminus; the other involves the interaction between Mid1(400-450) and Cdr2 kinase (Celton-Morizur et al., 2004; Almonacid et al., 2009). To further dissect how Gef2 regulates Mid1 localization and function, we investigated genetic interactions between gef2∆ and mid1 mutants/truncations (Figure 4, Supplemental Figure S3, and unpublished data). Strong synthetic defects in septum positioning were observed in double mutants of gef2∆ and 81nmt1-mECitrine-mid1 (under repressing condition), mid1-6, mid1-366, mid1(1-580), and mid1(1-506) (Figure 4, A and B, and Supplemental Figure S3, A and B). In addition, severe synthetic defects in septum positioning were observed in a double mutant of gef2∆ and the mid1(Helix*) mutant, which has mutations in the C-terminal amphipathic helix and severely affects Mid1 cortical binding (Celton-Morizur et al., 2004), but the defects were not observed in a double mutant of gef2∆ and the mid1(NLS*) mutant, which impairs Mid1 nuclear localization but is dispensable for Mid1 cortical localization (Celton-Morizur et al., 2004; Figure 4, A and B). These interactions suggest that Gef2 may regulate Mid1 function through its N-terminus.
Consistent with previous studies (Celton-Morizur et al., 2004; Lee and Wu, 2012), Mid1(1-506) and Mid1(1-580) localized to cytoplasm, nucleus, faint cortex nodes, and the contractile ring (Figure 4, C–E). However, their node and ring localizations were abolished in gef2∆ cells, whereas misplaced Rlc1 ring or filaments but not cytokinesis nodes were still present (Figure 4, C and D). The loss of Mid1 localization to the contractile ring or filaments was Cdr2 independent (Figure 4E). In contrast, the localization of Mid1 C-terminal fragment Mid1(507-920) did not require Gef2 (Supplemental Figure S3C). Consistent with the localization dependence, an interaction was detected between Gef2 and Mid1(1-506) but not between Gef2 and Mid1(507-920) in IP (Figure 4F). Thus Gef2 interacts with Mid1 N-terminus and is essential for its cortical localization.
We further tested the Mid1 domain/motif required for the interaction with Gef2. Mid1(300-350) and Mid1(400-450) are important for Mid1(1-506) localization and function (Almonacid et al., 2009). We hypothesized that these regions might bind to Gef2. Indeed, IP using yeast extracts revealed that the interaction between Gef2 and Mid1 was severely weakened in mid1(∆300-350) strain and to a lesser degree in mid1(∆400-450) strain (Figure 4G). Because Mid1(400-450) but not Mid1(300-350) binds to Cdr2 kinase (Almonacid et al., 2009) and Cdr2 also affects the interaction between Gef2 and full-length (FL) Mid1 (Figure 2F), it is likely that Mid1(300-350) binds to Gef2. Consistently, mid1(∆300-350) plo1-ts18 double mutant resembled gef2∆ plo1-ts18 cells with severe defects in septum positioning (Figure 4H). Together these results suggest that Gef2 physically interacts with Mid1 through Mid1(300-350) to regulate Mid1's cortical localization and stability, and this interaction is Cdr2 independent.
Dependence of Gef2 localization on Blt1 but not on actin filaments
We next investigated Gef2 localization. As reported (Moseley et al., 2009), Gef2 localizes to interphase nodes, cytokinesis nodes, and the contractile ring (Figure 5A). Compared to Mid1 (Wu and Pollard, 2005; Laporte et al., 2011), each average cell had 4270 ± 1190 Gef2 molecules and each interphase node contained 14 ± 6 Gef2 molecules (Figure 5B). An interphase node has 17 Mid1 molecules (Laporte et al., 2011), suggesting that Mid1 and Gef2 may bind to each other stoichiometrically during interphase. FRAP analysis revealed that the half-time of recovery of interphase Gef2 node was 115 ± 42 s (Figure 5C), which suggests that Gef2 is a relatively stable protein on the cell cortex, similar to Mid1 (Celton-Morizur et al., 2004; Zhang et al., 2010; Laporte et al., 2011). Consistently, Gef2 partially colocalized with Mid1 at interphase and cytokinesis nodes, as well as contractile ring before its constriction (Figure 5D). In addition, Gef2 also colocalized with Plo1 at the contractile ring during its formation, but no colocalization in nodes was detected (Figure 5D).
Then we examined how Gef2 is localized to the division site. In mammalian and S. cerevisiae cells, Polo kinases are crucial for the recruitment of Rho-GEF proteins to the division site (Yoshida et al., 2006; Petronczki et al., 2007, 2008). We tested whether Plo1 affected Gef2 localization. At 25°C, Gef2 localizations to nodes and the contractile ring were similar in plo1-ts18 cells and wt cells (Figure 5E). After 2 h at 36°C, Gef2 still localized to the nodes in both wt and plo1-ts18 mutant, although the signal decreased in plo1-ts18 cells. Compared to the normal ring in wt, plo1-ts18 cells, like mid1∆ cells, formed aberrant Gef2 ring or filamentous structures (Figure 5E). These results suggest that Plo1 is involved in but not required for Gef2 localization.
To determine the proteins required for Gef2 localization, we next examined the actin dependence of Gef2 localization (Figure 5F). In mitotic cells treated with latrunculin A (Lat‑A), compared with cells in the dimethyl sulfoxide control, both Gef2 and Myo2 rings became discontinuous but remained at the division site. In addition, node localization of Gef2 was not affected. Similar results were obtained after 30-min treatment, indicating that Gef2 localization does not depend on actin filaments. Consistent with the results of Moseley et al. (2009), interphase nodes of Gef2 were abolished in cdr2∆ and blt1∆ cells (Figure 5G). Gef2 appeared in some scattered puncta in cdr2∆ cells and resembled Blt1 localization in cdr2∆ cells (Moseley et al., 2009) but not in blt1∆ cells (Figure 5G), suggesting that Blt1 is required for Gef2 localization to interphase nodes. However, Gef2 still localized to cytokinesis nodes and the contractile ring in cdr2∆ and blt1∆ cells (Figure 5G). In blt1∆ cells, Gef2 cytokinesis nodes appeared 2.3 ± 1.8 min (n = 14 cells) after SPB separation (Figure 5H). Taken together, the results indicate that Gef2 localization depends on Blt1 during interphase but not during mitosis.
Gef2(957-1101) is sufficient for its localization, and the DBL-homology domain is important for division-site positioning
Gef2 is a putative Rho-GEF with 1101 amino acids (aa), which contains a conserved DBL-homology (DH) domain followed by a less conserved pleckstrin homology (PH) domain (Figure 6A). To dissect which region of Gef2 is required for its localization and function, we constructed Gef2 truncations under the native gef2 promoter and integrated at the gef2 locus (Figure 6A). We detected no Gef2 signals at cortical nodes or the contractile ring in the C-terminal truncations, even when only the last 145 aa were deleted, and the truncated Gef2 was diffused in the cells (Figure 6, A and B). Of interest, the last 145 aa were sufficient for localization to cortical nodes and the contractile ring (Figure 6B, ∆1-956). A weak nuclear signal was also detected in cells expressing Gef2(957-1101), (1-400), and (1-600) but not FL Gef2 (Figure 6B and unpublished data). On the other hand, the DH domain and other N-terminal regions were dispensable for Gef2 localization (Figure 6, A and B). Thus the C-terminal aa 957–1101 are required and sufficient for Gef2 localization.
We next tested how Gef2 domains/motifs contribute to Gef2 functions by crossing gef2 truncations to plo1-ts18 mutant (Figure 6, C and D). All the C-terminal truncations, which abolished the localization of Gef2 at nodes and the contractile ring, showed severe synthetic defects with the plo1-ts18 mutant in septum positioning as gef2∆. Even the smallest truncation, gef2(∆957-1101), showed 90 ± 0.4% abnormal septa in the plo1-ts18 mutant. The double mutant of gef2(∆211-443) plo1-ts18 exhibited 52 ± 21% abnormal septum, indicating the DH domain is important for Gef2 function. The region upstream of the DH domain was also important since 76 ± 16% of the gef2(∆1-443) plo1-ts18 cells had abnormal septa. Of interest, the smallest fragment, Gef2(957-1101), which can localize to nodes and the contractile ring but lacks the DH domain, still possessed partial function in division-site positioning, since only 42 ± 22% of gef2(∆1-956) plo1-ts18 cells had abnormal septa. Together these results suggest that Gef2 localizations are important for its function in division-site positioning, and both the N-terminal aa 1-443, including the DH domain, and the C-terminus (601–1101) contribute to division-plane specification.
Gef2 is important for contractile-ring stability and disassembly during ring constriction
Besides the interactions with mutants involved in division-site positioning and contractile-ring assembly, we found that gef2∆ also showed genetic interactions with cytokinesis mutants involved in contractile-ring maturation and constriction. A synthetic defect was observed in gef2∆ myp2∆ double mutant. Myp2 is an unconventional myosin II, which localizes to the contractile ring during late anaphase B and is important for ring integrity and constriction (Bezanilla et al., 1997, 2000). At 25°C, ∼23% wt and gef2∆ cells contained one septum (Figure 7A). In myp2∆ mutant, although septating cells increased to 31%, septum morphology was mostly normal (Figure 7A). However, in gef2∆ myp2∆ mutant, 35% cells contained one septum, and 15% had more than one septum. Many of the septa were incomplete or aberrant, suggesting that Gef2 is involved in ring constriction or septum formation.
To further explore the defects in gef2∆ myp2∆ mutant, we used Rlc1-tandem Tomato (tdTomato) and GFP-Psy1 (Nakamura et al., 2001) to examine the contractile ring and plasma membrane, respectively, during cytokinesis (Figure 7, B and C, and Supplemental Videos S8–S10). In wt and single-mutant cells, membrane invagination always occurred where a constricted ring was present. In some myp2∆ cells, asymmetric ring constriction was also observed (Figure 7, B and C, and Supplemental Videos S8 and S9). In contrast, the invaginated membrane and constricting ring were uncoupled in gef2∆ myp2∆ cells (Figure 7, B and C, and Supplemental Video S10). In time‑lapse movies, we observed that membrane invagination was coupled with ring constriction at the beginning and then the ring drifted away, which caused a delay for membrane invagination and cell separation (Figure 7C). In some cases, the ring collapsed during constriction, and the cells immediately tried to reassemble another ring near the original division site (Supplemental Video S10). Because the SIN pathway regulates ring disassembly (Krapp and Simanis, 2008; Roberts-Galbraith and Gould, 2008), we tested the genetic interactions between gef2∆ and SIN mutants. We found that gef2∆ mutant partially rescued the growth defects of SIN mutants cdc11-136 and sid2-250 at nonpermissive temperatures (Figure 7D). These results suggest that Gef2 plays a role in ring stability/anchoring and disassembly during late stages of cytokinesis.
DISCUSSION
Our data demonstrate that S. pombe putative Rho-GEF Gef2 is involved in division-site positioning and contractile-ring assembly through regulating Mid1 localization. In addition, Gef2 is also important for contractile-ring stability/anchoring and disassembly during ring constriction.
Gef2 and Plo1 coordinate for Mid1 localization and function
Mid1 phosphorylation by Polo kinase Plo1 triggers Mid1 nuclear export at the G2/M transition (Bähler et al., 1998a; Almonacid et al., 2011). Our data indicate that Gef2 helps Mid1 anchor to the plasma membrane through physical interactions with the Mid1 N-terminus. Then Mid1 serves as a scaffold for recruiting other proteins for contractile-ring assembly. Thus Gef2 and Plo1 coordinate and define new overlapping pathways for Mid1 localization and function.
Our results add another layer of complexity to Mid1 cortical targeting. Nuclear shuttling regulates the ratio between nuclear and cytoplasmic Mid1 (Bähler et al., 1998a; Paoletti and Chang, 2000; Daga and Chang, 2005; Almonacid et al., 2011). Two domains—Mid1(300-350) and Mid1(400-450)—have been identified to localize Mid1(1-506) to cortical nodes (Almonacid et al., 2009). In addition, the C-terminal amphipathic helix plus the polybasic NLS domain (Celton-Morizur et al., 2004) and the PH domain (Lee and Wu, 2012) are also important for Mid1 cortical targeting. Moreover, the cortical ER network limits Mid1's lateral diffusion on the membrane (Zhang et al., 2010). The synthetic defects of gef2Δ mid1 mutants also indicate that Mid1 localization and function are regulated by several pathways. Given the essential role of Mid1 in division-site selection, it is not surprising that fission yeast has several overlapping pathways to ensure the fidelity of Mid1 localization.
It is a common theme in animal cells that overlapping signals from central spindle and astral microtubules specify the cleavage site (Bringmann and Hyman, 2005; Barr and Gruneberg, 2007; Cabernard et al., 2010; Rankin and Wordeman, 2010). Although no evidence shows that Polo kinases phosphorylate anillins in multicellular organisms, anillins act synergistically with the centralspindlin complex for cleavage-furrow formation by interacting MgcRacGAP/RacGAP50C (Zhao and Fang, 2005; D'Avino et al., 2008; Gregory et al., 2008) and RhoA (Piekny and Glotzer, 2008). It will be interesting to explore whether anillins interact with Rho-GEF Ect2/Pebble in animal cells since it has been shown that Pebble controls anillin localization in Drosophila S2 cells (Hickson and O'Farrell, 2008). We do not know whether Mid1 binds to Gef2 directly or through a Rho GTPase. Moreover, it is unknown whether Gef2 is regulated by Polo kinase Plo1 through phosphorylation like other Rho-GEFs (Niiya et al., 2006; Yoshida et al., 2006). Nevertheless, our findings open new frontiers for studying division-site specification and contractile-ring assembly in both yeast and multicellular organisms.
The relationship between Gef2 and Cdr2 kinase in regulating Mid1 localization and function
Two overlapping mechanisms have been proposed to position Mid1 at the central cortex: one is the Cdr2-dependent anchoring of Mid1 in cortical nodes during interphase, and the other is Plo1-dependent Mid1 nuclear export at G2/M transition (Almonacid et al., 2009). Now we find that Gef2 also plays overlapping functions with Plo1. What is the relationship between Gef2 and Cdr2 in regulating Mid1 localization to the central cortex?
First, gef2Δ has no obvious synthetic defects with cdr2Δ in division-site specification (Figure 2B), so they are not on overlapping pathways. Second, both Cdr2 and Gef2 interact with the Mid1 N-terminus, but this might be through different domains. Almonacid et al. (2009) shows that Cdr2 interacts with Mid1(400-450), and our results suggest that Gef2 likely binds to Mid1(300-350). The interaction between Gef2 and Mid1 is severely affected in the mid1(Δ300-350) strain (Figure 4G). The small amount of Mid1(Δ300-350) pulled down by Gef2 might be from indirect interactions through Blt1-Cdr2. We find that mid1(Δ300-350) plo1-ts18 mimics gef2Δ plo1-ts18 in septum-positioning defects, which is consistent with the proposed interaction between Gef2 and Mid1(300-350). Third, Cdr2 is more important than Gef2 for Mid1 localization during interphase. Mid1 is recruited to interphase nodes mainly by Cdr2 kinase, since Mid1 localization is dramatically reduced in cdr2Δ cells (Almonacid et al., 2009; Moseley et al., 2009) but is not obviously affected in gef2Δ (Figure 2, A–C). Gef2's role is more obvious for the localization of Mid1 N-terminus. Cortical nodes of Mid1 N-termini (1–580 or 1–506) are abolished in gef2Δ. Fourth, Gef2 is more important than Cdr2 for Mid1 localization and function during mitosis, based on several lines of evidence. The level of Cdr2 in cortical nodes decreases at early mitosis, and Cdr2 only transiently localizes to the contractile ring (Morrell et al., 2004; Martin and Berthelot-Grosjean, 2009). In contrast, Gef2 remains in cytokinesis nodes and the contractile ring throughout cytokinesis. gef2Δ plo1-ts18 cells have more severe defects in division-site positioning than cdr2Δ plo1-ts18 and blt1∆ plo1-ts18 cells, despite the lack of Gef2 localization to cortical nodes during interphase in cdr2Δ or blt1Δ cells. In addition, Mid1 N-terminal truncations localize to the contractile ring in cdr2Δ but not in gef2Δ. Furthermore, the Mid1-Cdr2 fusion protein localizes to interphase nodes normally but can only partially rescues the defect of gef2∆ plo1-ts18 double mutant, indicating that the fusion protein cannot bypass the requirement for Gef2 during mitosis (Figure 3C).
Collectively, the results indicate that Cdr2 kinase and Gef2 have overlapping functions with Plo1 for Mid1 localization and division-site selection at different cell-cycle stages. Cdr2 is more important during interphase, and Gef2 is critical during mitosis. The overlapping mechanisms provide more precision and fidelity for cytokinesis. It will be interesting to know whether homologues of Cdr2 (Kishi et al., 2005) and Gef2 in multicellular organisms play overlapping roles with Polo kinase in regulating anillin localizations and functions.
Gef2 localization and function
Gef2 localization is actin independent (Figure 5F). During interphase, Gef2 depends on both Cdr2 and Blt1 for localization to interphase nodes (Figure 5G; Moseley et al., 2009). Because Blt1 localization depends on Cdr2 and Blt1 physically interacts with Gef2 (Moseley et al., 2009), it is more likely that Blt1 directly recruits Gef2 to interphase nodes. Although Mid1 concentration in interphase nodes is not affected without Gef2, Mid1 becomes more dynamic (Figure 2, C and E), suggesting that Gef2 stabilizes Mid1 cortical localization during interphase. However, Cdr2 and Blt1 are not required for Gef2 localization to cytokinesis nodes and contractile ring during mitosis (Figure 5, G and H).
During mitosis, F-BAR protein Cdc15 might be involved in Gef2 localization. Gef2 appears in cytokinesis nodes ∼2 min after SPB separation in blt1Δ cells (Figure 5H), which is after Cdc15 (Wu et al., 2003; Laporte et al., 2011). In addition, the Gef2 level in the contractile ring is dramatically reduced in cdc15-140 cells at 36°C, and Cdc15 and Gef2 physically interact in IP (unpublished data). However, it is also possible that Gef2 binds to the plasma membrane directly using its last 145 aa, since this region is required for its localization (Figure 6, A and B). Consistently, Cdc15 is involved in the organization of lipid rafts (Takeda et al., 2004). Cortical localization of human Ect2 requires a PH domain right downstream the DH domain and a polybasic cluster near its C-terminus (Chalamalasetty et al., 2006; Su et al., 2011). Of interest, Gef2 contains a domain with low similarity (16% identity and 43% similarity) to the PH domain of mouse Ect2, although it seems that this region is not important for Gef2 localization (Figure 6A). Thus further studies are needed to determine how Gef2 is localized during mitosis.
Budding yeast and mammalian Rho-GEFs such as Tus1 and Ect2 are known to regulate Rho1/RhoA activation by converting Rho from GDP-bound to GTP-bound status (Schmelzle et al., 2002; Chalamalasetty et al., 2006; Yoshida et al., 2006). The DH domain of Gef2 is important for Gef2 function in division-site positioning (Figure 6). None of the six Rho GTPases has been shown to regulate Mid1 or localize to cortical nodes in fission yeast. Deletion mutants of rho2 to rho5 showed no obvious defect in division-site positioning or contractile-ring assembly, even in the double mutants with plo1-ts18 (unpublished data). Although Rgf3—a GEF for Rho1—might be involved in contractile-ring assembly (Mutoh et al., 2005), the downstream effector(s) of Rho1 is unknown. Activated Cdc42 localizes to the contractile ring, and the localization depends on human BIN3 orthologue Hob3 (Merla and Johnson, 2000; Coll et al., 2007). However, hob3Δ cells have defects in contractile-ring constriction but not formation (Coll et al., 2007). Thus further studies are needed to investigate whether Gef2 has GEF activity and which Rho GTPase might be activated by Gef2.
Roles of Gef2 in contractile-ring stability and disassembly in late cytokinesis
Our data provide evidence that Gef2 plays a role in ring constriction during late cytokinesis. We find that Gef2 and Myp2 control contractile-ring stability/anchoring (Figure 7, B and C). In fission yeast, the postanaphase array of microtubules is important for stabilizing the contractile ring (Pardo and Nurse, 2003), and Myp2 is important for its formation (Samejima et al., 2010). However, gef2∆ showed no obvious genetic interactions with mto1∆ or mto2∆ mutants (unpublished data), which are also required for postanaphase array formation (Samejima et al., 2005), suggesting that Gef2 and Myp2 regulate contractile-ring stability through a microtubule-independent pathway. Among the seven Rho GEFs, Rgf1–3 are also involved in late stages of cytokinesis (Tajadura et al., 2004; Morrell-Falvey et al., 2005; Mutoh et al., 2005; Garcia et al., 2006, 2009a, 2009b; Wu et al., 2010). Our preliminary results show that Gef2 and Rgf1 have synthetic defects in cytokinesis. Further studies are needed to map out the redundancy among the Rho-GEFs in late stages of cytokinesis.
gef2∆ myp2∆ cells also have defects in contractile-ring disassembly (Supplemental Video S10), which suggests that the SIN pathway might be hyperactive or cannot be turned off in these cells (Krapp and Simanis, 2008; Roberts-Galbraith and Gould, 2008). Because myp2∆ is synthetic with SIN mutants cdc11 and cdc14 (Bezanilla et al., 1997) but gef2∆ can partially suppress the growth defects of sid2 and cdc11 mutants (Figure 7D), Gef2 activity might be antagonistic to the SIN pathway during ring constriction. It will be interesting to determine the molecular mechanism of the suppression.
In conclusion, we find that the putative Rho-GEF Gef2 regulates division-site selection and contractile-ring assembly in fission yeast. Gef2 and Polo kinase coordinate to regulate the cortical localization of anillin Mid1. These findings provide the first evidence that Gef2 plays an important role in early steps of cytokinesis in fission yeast.
MATERIALS AND METHODS
Strains, genetics, molecular, and cellular methods
Strains used in this study are listed in Supplemental Table S1. Standard genetic and PCR-based gene targeting methods were used to transform yeast cells and construct strains (Moreno et al., 1991; Bähler et al., 1998b). All tagged, truncated, and fusion genes are under endogenous promoters and integrated into their native chromosomal loci, except for Purg1-mid1 (under the control of urg1 promoter and integrated at mid1+ locus) and leu1::Pmid1-mid1 (under mid1 promoter and integrated at leu1+ locus). The urg1 promoter is induced when cells are grown in media with uracil (Watt et al., 2008).
To construct gef2 N-terminal truncations, gef2 5′ untranslated region (UTR; −600 to +3) was cloned into pFA6a-kanMX6-P3nmt1-mECitrine at BglII and PacI sites. mECitrine was constructed from mYFP (S65G, V68L, Q69K, S72A, T203Y, and A206K) by introducing the F64L and Q69M mutations. The resulting plasmid was used as template, and kanMX6-Pgef2-mECitrine fragments were amplified by using primers corresponding to the desired truncations and transformed to wt strain as described (Bähler et al., 1998b). The positive transformants were confirmed by PCR and/or sequencing.
To construct gef2 C-terminal truncation strains, ADH1 terminator with the selectable marker TADH1-natMX6 or TADH1-hphMX6 was amplified by PCR using primers corresponding to each truncation and transformed into mECitrine-gef2 strain (JW3825) as described (Bähler et al., 1998b). For constructing Gef2(Δ211-443)-mECitrine with the DH domain deleted (JW3498), a DNA fragment gef2(631-3435)-mECitrine-natMX6 + 400 base pairs 3′ UTR of gef2 was amplified by PCR from gef2-mECitrine-natMX6 strain (JW2997) and cloned into the TOPO vector. Note that gef2 has three introns. The resulting plasmid was used as template to amplify the DNA fragment gef2(1330-3435)-mECitrine-natMX6 + 400 base pairs 3′ UTR of gef2, with the forward primer containing the first 70 base pairs, corresponding to gef2(561-630), and the last 20 base pairs corresponding to gef2(1330-1349), and the reverse primer (20 base pairs) complementary to the 3′ end of gef2 3′ UTR. Then the PCR fragment was transformed into the strain expressing Gef2(Δ211-1101)-mECitrine (JW3497). To construct Gef2(Δ211-443) without the C-terminal tag (JW4238), a DNA fragment gef2(3132-3435) + 442 base pairs 3′ UTR of gef2 (Tgef2) was amplified by PCR and inserted into pFA6a-mYFP-kanMX6 at PacI and BglII sites. The resulting plasmid was used as template to amplify Tgef2-kanMX6 with the corresponding primers, and the PCR fragment was transformed into Gef2(Δ211-443)-mECitrine strain (JW3498). All truncations were confirmed by PCR and sequencing.
We tested the functionalities of tagged FL Gef2 in plo1-ts18 background at 25°C. Approximately 50% of gef2-mECitrine plo1-ts18 cells had abnormal septa, whereas only ∼8% of Pgef2‑mECitrine-gef2 plo1-ts18 cells had abnormal septa, which is similar to plo1-ts18 single mutant. Thus the N-terminally tagged Gef2 under its endogenous promoter is more functional than the C-terminally tagged one. However, for an unknown reason, both mECitrine-Gef2 and Gef2-mECitrine formed some aggregates at 36°C (Figure 5E). Thus tagged Gef2 may not be 100% functional.
To construct Mid1-Cdr2 fusion protein, mid1-FL-linker and cdr2-mEGFP-kanMX6 were first cloned into the TOPO vector. mid1-FL-linker was amplified by using a forward primer starting 25 base pairs before the start codon of mid1 ORF and a reverse primer complementary to the canonical C-terminal gene targeting linker CGGATCCCCGGGTTAATTAAC (Bähler et al., 1998b). SalI and PmeI sites were added to the reverse primer for further construction. cdr2-mEGFP-kanMX6 was amplified from the genomic DNA of cdr2-mEGFP (JM346) using a forward primer with a SalI site followed by the first 20 base pairs of cdr2 and a reverse primer GAATTCGAGCTCGTTTAAAC. The reverse primer is complementary to the C-terminal–targeting module of pFA6a and has a PmeI site (Bähler et al., 1998b). cdr2-mEGFP-kanMX6 was then inserted into the 3′ end of mid1-FL-linker after SalI and PmeI digestion and ligation. The resulting plasmid was digested by SpeI and XhoI. Then the fragment of mid1-FL-linker-cdr2-mEGFP-kanMX6 was transformed into the strain mid1-13Myc-hphMX6 (JW3206). The positive transformants were confirmed by PCR. The linker between Mid1 and Cdr2 is RIPGLINVD.
Septum staining with 10 μg/ml calcofluor and treatment with 100 μM Lat-A to depolymerize actin filaments were carried out as described (Wu et al., 2001).
Microscopy and data analysis
Cells were restreaked from −80°C stocks, grown 1–2 d on yeast extract plus five supplements (YE5S) plates at 25°C, and then inoculated into 10-ml YE5S liquid cultures. Cells were grown at exponential phase for 18–48 h at 25°C except where noted. The short culture times for gef2Δ plo1-ts18 were to prevent the effects of adaptation or second-site suppressor(s). Cells were collected from liquid cultures by centrifugation at 3500 rpm, washed with Edinburgh minimal medium plus five supplements (EMM5S), and resuspended in EMM5S with 0.1 mM n‑propyl-gallate. Live-cell microscopy was carried out by loading samples onto a thin layer of 125 μl of EMM5S liquid medium with 20% gelatin (G-2500; Sigma-Aldrich, St. Louis, MO) and 0.1 mM n‑propyl-gallate, sealed under a coverslip with valap, and observed at 23–25°C. Some samples were loaded directly onto slides for imaging at single time points.
For quantification of septation patterns, calcofluor-stained cells were imaged with a 100×/1.4 numerical aperture (NA) Plan-Apo objective lens on a Nikon Eclipse Ti inverted microscope (Nikon, Melville, NY) equipped with a Nikon cooled digital camera DS-QI1 and a 4′,6-diamidino-2-phenylindole (DAPI) filter. All other microscopy was carried out on a spinning disk confocal microscope (UltraVIEW ERS with CSU22 confocal head; PerkinElmer Life and Analytical Sciences, Waltham, MA) equipped with a 100×/1.4 NA Plan-Apo objective lens and an ORCA-AG camera (Hamamatsu, Hamamatsu, Japan) on a Nikon Eclipse TE2000-U inverted microscope. A 440-nm solid‑state laser, 488- and 514-nm argon-ion lasers, and a 568-nm krypton-argon-ion laser were used for excitation.
Images were analyzed using ImageJ (Bethesda, MD) and UltraVIEW. Fluorescence images shown in figures and movies are maximum-intensity projections of stacks of images spanning whole cells at 0.4- or 0.5-μm spacing, except where noted otherwise. Fluorescence intensity was measured as described before (Coffman et al., 2011; Laporte et al., 2011). Briefly, 14 z-sections with 0.4‑μm spacing were taken at the exactly same imaging conditions for all strains except the images used for mitotic Mid1 intensity measurement in cdr2∆ background, which were 12 z-sections with 0.5‑μm spacing. The images were subtracted by the offset and corrected for the uneven illumination. Mean intensities in the whole cells were measured using sum intensity projections. The corresponding untagged strains were used for background subtraction. Mean intensities of interphase nodes were measured using a rectangular region of interest (ROI) with an average area of 60–85 pixels in the best focal plane. The intensities of the plasma membrane outside the ROI in the same cell were used for background subtraction (Figure 2C). Mid1 mean intensities in cytokinesis nodes and in the nucleus of early mitotic cells were measured using a rectangular or circular ROI with an average area of ∼44 (for cytokinesis node) or ∼328 (for nucleus) pixels in the best focal plane. The intensity of the cytoplasm outside the ROI in the same cell was used for background subtraction (Figure 2D). Because Mid1 signal spreads on the plasma membrane of gef2Δ plo1-ts18 and cdr2Δ gef2Δ plo1-ts18 cells during early mitosis, the smaller ROI and the cytoplasmic background (instead of the plasma membrane background) were used for the measurements. To count the Gef2 molecules, the global and local intensities of Gef2 and Mid1 were measured as described, and then the Gef2 intensities were normalized to Mid1 intensities to obtain molecule numbers (Wu and Pollard, 2005; Laporte et al., 2011).
FRAP analysis
FRAP experiments were performed with the photokinesis unit on the UltraVIEW ERS confocal system as described (Coffman et al., 2009; Laporte et al., 2011). Optimal focal plane for bleaching was selected from z-sections. After collection of four prebleach images, the ROIs containing several cortical nodes were bleached >50% of the original signal, and 120 postbleach images with 10-s delay were collected. Intensity of every three consecutive time points was averaged to reduce noise. After subtracting the background and correcting for photobleaching during image acquisition (using intensity at unbleached region), the ROI intensity was normalized with the mean prebleach intensity set to 100% and the intensity just after bleaching set at 0%. Time 0 was set as first time point after bleaching. The exponential equation y = m1+m2 exp(−m3x) was used for the curve fit, in which m3 is the off-rate (KaleidaGraph; Synergy Software, Reading, PA). The half-time of recovery was calculated as t1/2 = (ln 2)/m3.
IP and Western blotting
Yeast cells expressing tagged proteins under the control of native promoters were harvested at exponential phase, washed with CXS buffer (50 mM 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid [HEPES], 20 mM KCl, 2 mM EDTA, 1 mM MgCl2, pH 7.5), and frozen with liquid nitrogen in CXS buffer with EDTA-free protein inhibitor (Roche, Indianapolis, IN). A total of ∼2 × 108 frozen cells were disrupted by grinding in mortar with liquid nitrogen. After thawing and centrifugation at 3500 rpm for 5 min at 4°C, lysis buffer (10 mM Tris, 130 mM NaCl, and 1% Triton, pH 8.0) was added to the crude extract, then centrifuged at 13,000 rpm for 20 min at 4°C. Thirty microliters of protein G covalently coupled magnetic Dynabeads (100.04D; Invitrogen, Carlsbad, CA) per sample was washed three times with cold phosphate-buffered saline (PBS) buffer (2.7 mM KCl, 137 mM NaCl, 10 mM Na2HPO4, and 2 mM KH2PO4, pH 7.4), and 5 μl of rabbit anti-YFP antibody (NB600-308; Novus Biologicals, Littleton, CO) per sample in PBS buffer was added to beads. After incubation for 1 h at room temperature, the beads were washed three times with PBS buffer and twice with CXS buffer. Cell extracts of ∼200 μl were mixed with antibody-coupled Dynabeads and incubated for 1.5 h at 4°C. The precipitated beads were washed five times with CXS buffer plus 1% Triton, then dissolved in sample buffer and boiled for 5 min. After separation of proteins in SDS–PAGE, Western blotting was performed as described (Laporte et al., 2011) using monoclonal anti–GFP/YFP JL-8 antibody (632381, 1:2500 dilution; Clontech,) or monoclonal anti-Myc antibody (9E10, 1:2500 dilution; Santa Cruz Biotechnology, Santa Cruz, CA).
For Mid1 total protein analysis (Supplemental Figure S2), yeast cells were harvested at exponential phase, washed twice with double-distilled H2O, and resuspended in LiAc/SDS buffer (200 mM LiAc, 1% SDS, pH 7.5). After incubation at 65°C for 10 min, cells were mixed with sample buffer and boiled for 5 min. After centrifugation at 3000 rpm for 5 min, proteins in the supernatant were separated in SDS–PAGE, and Western blotting was performed as described. The intensities of Mid1 and tubulin bands were measured using Image J. The intensity for each strain was subtracted by the background of the same size in a nearby area before ratio comparison.
Supplementary Material
Acknowledgments
We thank Anne Paoletti, Iain Hagan, Dannel McCollum, Jürg Bähler, John Pringle, James Moseley, Paul Nurse, Fred Chang, Taro Nakamura, and the Yeast Genetic Resource Center Japan (supported by the National BioResource Project) for strains. We thank members of the Wu laboratory for helpful discussions and suggestions. This work was partially supported by a Basil O'Connor Starter Scholar Research Award to J.-Q.W. and National Institutes of Health Grants R01AG19960 to K.W.R. and R01GM086546 to J.-Q.W.
Abbreviations used:
- aa
amino acids
- DH
DBL-homology
- DIC
differential interference contrast
- FL
full length
- FRAP
fluorescence recovery after photobleaching
- GEF
guanine nucleotide exchange factor
- IP
immunoprecipitation
- Lat‑A
latrunculin A
- mECitrine
monomeric enhanced Citrine
- mEGFP
monomeric enhanced green fluorescent protein
- mYFP
monomeric yellow fluorescent protein
- NLS
nuclear localization sequence
- PH
pleckstrin homology
- ROI
region of interest
- SIN
septation initiation network
- SPB
spindle pole body
- tdTomato
tandem Tomato
- wt
wild type
Footnotes
This article was published online ahead of print in MBoC in Press (http://www.molbiolcell.org/cgi/doi/10.1091/mbc.E11-09-0800) on February 1, 2012.
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