Skip to main content
Nucleic Acids Research logoLink to Nucleic Acids Research
. 1990 Apr 25;18(Suppl):2367–2411. doi: 10.1093/nar/18.suppl.2367

Codon usage tabulated from the GenBank genetic sequence data

Ken-nosuke Wada 2, Shin-ichi Aota 1,a, Rye Tsuchiya 1, Fumie Ishibashi 1, Takashi Gojobori 1, Toshimichi Ikemura 1
PMCID: PMC331878  PMID: 2333226

Full text

PDF
2367

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Aota S., Gojobori T., Ishibashi F., Maruyama T., Ikemura T. Codon usage tabulated from the GenBank Genetic Sequence Data. Nucleic Acids Res. 1988;16 (Suppl):r315–r402. doi: 10.1093/nar/16.suppl.r315. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Aota S., Ikemura T. Diversity in G + C content at the third position of codons in vertebrate genes and its cause. Nucleic Acids Res. 1986 Aug 26;14(16):6345–6355. doi: 10.1093/nar/14.16.6345. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Bernardi G., Bernardi G. The human genome and its evolutionary context. Cold Spring Harb Symp Quant Biol. 1986;51(Pt 1):479–487. doi: 10.1101/sqb.1986.051.01.059. [DOI] [PubMed] [Google Scholar]
  4. Grantham R., Gautier C., Gouy M., Jacobzone M., Mercier R. Codon catalog usage is a genome strategy modulated for gene expressivity. Nucleic Acids Res. 1981 Jan 10;9(1):r43–r74. doi: 10.1093/nar/9.1.213-b. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Ikemura T., Aota S. Global variation in G+C content along vertebrate genome DNA. Possible correlation with chromosome band structures. J Mol Biol. 1988 Sep 5;203(1):1–13. doi: 10.1016/0022-2836(88)90086-1. [DOI] [PubMed] [Google Scholar]
  6. Ikemura T. Codon usage and tRNA content in unicellular and multicellular organisms. Mol Biol Evol. 1985 Jan;2(1):13–34. doi: 10.1093/oxfordjournals.molbev.a040335. [DOI] [PubMed] [Google Scholar]
  7. Maruyama T., Gojobori T., Aota S., Ikemura T. Codon usage tabulated from the GenBank genetic sequence data. Nucleic Acids Res. 1986;14 (Suppl):r151–r197. doi: 10.1093/nar/14.suppl.r151. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Nussinov R. Strong doublet preferences in nucleotide sequences and DNA geometry. J Mol Evol. 1984;20(2):111–119. doi: 10.1007/BF02257371. [DOI] [PubMed] [Google Scholar]
  9. Sharp P. M., Cowe E., Higgins D. G., Shields D. C., Wolfe K. H., Wright F. Codon usage patterns in Escherichia coli, Bacillus subtilis, Saccharomyces cerevisiae, Schizosaccharomyces pombe, Drosophila melanogaster and Homo sapiens; a review of the considerable within-species diversity. Nucleic Acids Res. 1988 Sep 12;16(17):8207–8211. doi: 10.1093/nar/16.17.8207. [DOI] [PMC free article] [PubMed] [Google Scholar]

Articles from Nucleic Acids Research are provided here courtesy of Oxford University Press

RESOURCES