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. 2012 Apr;78(8):2716–2726. doi: 10.1128/AEM.07015-11

Prevalence, Enumeration, Serotypes, and Antimicrobial Resistance Phenotypes of Salmonella enterica Isolates from Carcasses at Two Large United States Pork Processing Plants

John W Schmidt 1,, Dayna M Brichta-Harhay 1, Norasak Kalchayanand 1, Joseph M Bosilevac 1, Steven D Shackelford 1, Tommy L Wheeler 1, Mohammad Koohmaraie 1,*
PMCID: PMC3318825  PMID: 22327585

Abstract

The objective of this study was to characterize Salmonella enterica contamination on carcasses in two large U.S. commercial pork processing plants. The carcasses were sampled at three points, before scalding (prescald), after dehairing/polishing but before evisceration (preevisceration), and after chilling (chilled final). The overall prevalences of Salmonella on carcasses at these three sampling points, prescald, preevisceration, and after chilling, were 91.2%, 19.1%, and 3.7%, respectively. At one of the two plants, the prevalence of Salmonella was significantly higher (P < 0.01) for each of the carcass sampling points. The prevalences of carcasses with enumerable Salmonella at prescald, preevisceration, and after chilling were 37.7%, 4.8%, and 0.6%, respectively. A total of 294 prescald carcasses had Salmonella loads of >1.9 log CFU/100 cm2, but these carcasses were not equally distributed between the two plants, as 234 occurred at the plant with higher Salmonella prevalences. Forty-one serotypes were identified on prescald carcasses with Salmonella enterica serotypes Derby, Typhimurium, and Anatum predominating. S. enterica serotypes Typhimurium and London were the most common of the 24 serotypes isolated from preevisceration carcasses. The Salmonella serotypes Johannesburg and Typhimurium were the most frequently isolated serotypes of the 9 serotypes identified from chilled final carcasses. Antimicrobial susceptibility was determined for selected isolates from each carcass sampling point. Multiple drug resistance (MDR), defined as resistance to three or more classes of antimicrobial agents, was identified for 71.2%, 47.8%, and 77.5% of the tested isolates from prescald, preevisceration, and chilled final carcasses, respectively. The results of this study indicate that the interventions used by pork processing plants greatly reduce the prevalence of Salmonella on carcasses, but MDR Salmonella was isolated from 3.2% of the final carcasses sampled.

INTRODUCTION

Food-borne nontyphoidal Salmonella enterica (NTS) is estimated to sicken 1 million people annually in the United States, resulting in approximately 19,000 hospitalizations and 378 deaths (13). In most cases, the disease is self-limiting, but invasive salmonellosis is estimated to occur in 5% of cases. Over 2,500 serotypes of Salmonella enterica have been identified, but they vary in their host range and ability to cause disease in humans. Human infections caused by four serotypes commonly isolated from carcass samples from swine, Salmonella enterica serotypes Choleraesuis, Heidelberg, Schwarzengrund, and Brandenburg, result in significantly higher proportions of invasive disease than that observed for infections caused by S. enterica serotype Typhimurium (44).

In the United States, 5% of illnesses due to NTS are attributed to pork products (23). There were six pork-related Salmonella outbreaks in the United States during 2007 that resulted in 208 illnesses and 24 hospitalizations (14, 18). Studies on the prevalence of Salmonella in U.S. retail pork products are very limited, and results vary from “less than 2%” in one study (66) to 9.6% in another (27). The prevalence of Salmonella on carcasses in the United States after chilling (chilled final) examined between 2001 and 2009 ranged between 2 and 4% according to the annual reports of the Food Safety and Inspection Service (FSIS) testing of U.S. slaughter establishments (33). Salmonella enterica serotypes Derby and Typhimurium were the two most commonly detected serotypes in FSIS-tested chilled final carcasses and in both clinical and nonclinical veterinary swine samples (31, 33). While Salmonella Derby was not among the 20 most commonly isolated serotypes from human clinical samples, Salmonella Typhimurium was the most frequently isolated serotype from all human clinical samples and from invasive infections reported to the Centers for Disease Control from 1996 to 2007 (17, 20, 44).

Expanded-spectrum cephalosporins (ESCs) and fluoroquinolones are commonly prescribed antimicrobial agents for the treatment of invasive salmonellosis (37). However, antimicrobial treatment of invasive salmonellosis has been complicated by an increase in Salmonella bacteria that are resistant to antimicrobials (16, 47). Additionally, several studies concluded that infections with Salmonella resistant to multiple antimicrobials, known as multidrug-resistant (MDR) Salmonella, are more invasive than infections caused by non-MDR Salmonella (20, 39, 61, 62). Infants are at higher risk for invasive salmonellosis (63), and the incidence of laboratory-confirmed NTS in infants (children less than 1 year old) is much greater than in other age groups (17, 19). Clinical reports of the isolation of Salmonella resistant to ESCs, including the drug of choice, ceftriaxone, are increasing (58, 64). This is a grave concern because ceftriaxone and related ESCs are the only treatment option in children due to the risk of cartilage damage from fluoroquinolone use (48). Salmonella bacteria resistant to ESCs have been isolated from pork products, demonstrating the need for data on the prevalence of drug-resistant Salmonella in the pork processing environment (50, 65).

In spite of the evidence of contamination of pork with Salmonella, the increased occurrence and invasiveness of MDR Salmonella, and the prevalence of Salmonella serotypes associated with invasive infections in samples from swine, few studies, if any, have examined the prevalence, load, serotype, and antimicrobial resistance of Salmonella present on swine carcasses at harvest. In particular, Salmonella occurrence on the skin of swine upon arrival in the abattoir and during the scalding/singeing/polishing process was identified as specific data gaps by the authors of a recent quantitative risk assessment model of the prevalence of Salmonella on swine carcasses (5). In the present study, samples were taken with sponges from three points along the pork processing line at two commercial U.S. pork processing facilities: the prescald carcass (postexsanguination), the preevisceration carcass (postscald, singe, and polish), and the chilled final carcass. The resulting prevalence and enumeration data will aid in improving quantitative risk assessment models and in the formulation of interventions to reduce the occurrence of Salmonella on the final swine carcasses.

MATERIALS AND METHODS

Sample collection.

Two large-scale commercial pork processing plants located in the United States were each sampled eight times between summer 2007 and spring 2008. Each plant (designated plant A and plant B) was visited once a season (summer, fall, winter, and spring), and carcass samples were collected over two consecutive days on each trip, totaling eight sampling days per plant for a total of 16 sampling days. On each sampling day, 95 samples were taken from each of three sampling points on the processing line: prescald carcass, preevisceration carcass, and chilled final carcass. Over the course of the study, a total of 4,560 samples were taken, 1,520 at each sample point. All samples were taken with sterile sponges (Whirl Pak; Nasco, Fort Atkinson, WI) prewetted with 20 ml of buffered peptone water (BPW; Becton Dickinson, Franklin Lakes, NJ). To prevent cross contamination, gloves were worn during sampling and were changed following each sample. Prescald carcass samples were obtained by using both sides of the prewetted sponge to swab an area of approximately 1,500 cm2 along the belly midline. After scalding, singeing, and polishing of the carcass, preevisceration carcass samples were obtained by using both sides of the prewetted sponge to swab approximately 4,000 cm2 of the carcass surface along the midline from ham to breast, including foreshank and jowl. Final carcass samples were obtained from carcasses that had been chilled at least overnight in coolers, by using both sides of the sponge to swab approximately 4,000 cm2 of the carcass surface along the split midline from ham collar to jowl and foreshank. No effort was made to match samples taken from each point to specific animals or groups of animals at other points. Prescald and preevisceration samples were collected at the same time. Chilled final carcass samples were collected on the same day, from carcasses harvested previously (after 24 to 72 h of chilling). All samples were transported in coolers with ice packs, received, and processed at the U.S. Meat Animal Research Center within 24 h of collection.

Salmonella enumeration.

Enumeration of Salmonella present in carcass samples was performed as previously described (9) with the following modification. For prescald carcass samples, 500 μl of liquid from the sponge bag was removed, placed in a 1.5-ml microcentrifuge tube, vortexed briefly, and allowed to settle for 3 min. Fifty microliters was then spiral plated onto xylose lysine desoxycholate medium (Oxoid, Basingstoke, United Kingdom) containing 4.6 ml liter−1 Tergitol, 15 mg liter−1 novobiocin, and 5 mg liter−1 cefsulodin (XLDtnc). For preevisceration and chilled final carcass samples, 3 ml of liquid from the sponge bag was mixed with 4 ml of BPW containing 1% (vol/vol) Tween 80. The resulting 7-ml sample was then filtered through an Iso-Grid hydrophobic grid membrane filter (HGMF) (Neogen Corp., Lansing, MI) using a FiltaFlex HGMF apparatus (FiltaFlex, Almonte, Ontario, Canada). The HGMF was placed on an XLDtnc plate. The XLDtnc plates were incubated at 37°C for 18 to 20 h and at room temperature (23 to 25°C) for an additional 18 to 20 h. For each sample, the number of presumptive Salmonella on the plate was recorded. Up to 10 presumptive Salmonella colonies from each sample were inoculated into 0.7-ml tryptic soy broth (TSB; Becton Dickinson) cultures contained in 96-well blocks. Inoculated blocks were incubated overnight at 37°C. PCR of the Salmonella-specific portion of the invA gene was used to confirm the presence of Salmonella (52, 53). The number of confirmed Salmonella was determined for each sample by multiplying the number of presumptive Salmonella colonies by the percentage of overnight cultures confirmed to contain Salmonella by invA PCR (9). The number of confirmed Salmonella was then reported as log CFU per 100 cm2. The lower limit of detection for prescald carcass samples was 1.4 log CFU/100 cm2. The lower limit of detection for preevisceration and chilled final carcass samples was −0.8 log CFU/100 cm2.

Salmonella prevalence.

Eighty milliliters of TSB was added to each sample taken with a sponge. The samples were preenriched at 25°C for 2 h, heated to 42°C for 6 h, and then held at 4°C (generally 8 to 10 h) until the samples were processed the next day (4). A 1-ml aliquot of each preenrichment sample was removed and mixed with 20 μl of Salmonella-specific immunomagnetic separation beads (Dynal, Lake Success, NY) (21). The bacterium-bead complex was extracted, placed into a Rappaport-Vassiliadis soy peptone broth selective enrichment (Oxoid), and incubated at 42°C for 18 to 20 h (8). The selective enrichment was then swabbed onto XLDtnc and Difco brilliant green agar containing 80 mg liter−1 sulfadiazine (Becton Dickinson) (8). Up to four presumptive Salmonella colonies from each sample were selected for confirmation by PCR for the presence of the Salmonella-specific portion of the invA gene as described above (52, 53).

Identification of Salmonella serotypes.

Serotyping was performed on each Salmonella isolate confirmed positive for invA by PCR (n = 6,089). A frozen overnight culture of each of these isolates confirmed to be Salmonella was streaked for isolation on an XLDtnc plate and incubated at 37°C for 18 to 20 h. One colony demonstrating typical Salmonella morphology from each plate was selected, streaked on tryptic soy agar (TSA; Becton Dickinson), and incubated at 37°C for 18 to 20 h. The resulting pure cultures were subjected to molecular serotyping methods (29, 40, 41) and further confirmed by serologic methods using Wellcolex Color Salmonella agglutination (Remel, Lenexa, KS) and traditional slide agglutination serotype O grouping and tube agglutination flagellar H typing, using commercial antisera (Denka-Seken Co. Ltd., Tokyo, Japan) following the manufacturer's guidelines.

Identification of antimicrobial-resistant isolates.

Each confirmed Salmonella isolate was initially screened for antimicrobial resistance by replica plating onto four 150-mm TSA plates supplemented with either no additional antimicrobial agents, 32 mg liter−1 ampicillin, 32 mg liter−1 tetracycline, or 64 mg liter−1 kanamycin using a 96-pin Boekel microplate replicator (Boekel Scientific, Feasterville, PA). It has been demonstrated that resistances to these antimicrobials are the most frequently observed in Salmonella (6, 30, 60). Isolates identified as resistant to one or more of these three antimicrobials were grouped into categories based on their sampling point, serotype, growth on the screened antimicrobials, and sampling day isolated.

Antimicrobial susceptibility determination.

At least one isolate from each category of resistant isolates described in the previous section was arbitrarily selected for antimicrobial susceptibility testing (912 isolates tested overall). Antimicrobial susceptibility testing was performed using the Sensititre broth microdilution system (TREK Diagnostic Systems, Toledo, OH) and CMV1AGNF test plates to determine the MIC for each of 15 antimicrobial agents. The antimicrobial agents, their abbreviations (shown in parentheses), and breakpoints for resistance in this panel were as follows: amikacin (AMI), ≥64 μg ml−1; amoxicillin-clavulanic acid (AMC), ≥32-16 μg ml−1; ampicillin (AMP), ≥32 μg ml−1; cefoxitin (FOX), ≥32 μg ml−1; ceftiofur (TIO), ≥8 μg ml−1; ceftriaxone (AXO), ≥16 μg ml−1; chloramphenicol (CHL), ≥32 μg ml−1; ciprofloxacin (CIP), ≥4 μg ml−1; gentamicin (GEN), ≥16 μg ml−1; kanamycin (KAN), ≥64 μg ml−1; nalidixic acid (NAL), ≥32 μg ml−1; streptomycin (STR), ≥64 μg ml−1; sulfisoxazole (FIS), ≥512 μg ml−1; tetracycline (TET), ≥16 μg ml−1; and trimethoprim-sulfamethoxazole (COT), ≥4-76 μg ml−1. In this study, isolates resistant to three or more classes of antimicrobials were considered MDR. The antimicrobial classes were as follows: aminoglycoside (AMI, GEN, KAN, and STR), β-lactam/β-lactamase inhibitor combination (AMC), cephem (FOX, TIO, and AXO), folate pathway inhibitor (FIS and COT), penicillin (AMP), phenicol (CHL), quinolone (CIP and NAL), and tetracycline (TET).

Statistics.

Salmonella prevalence and percent enumerable values were evaluated with the Compare2 program of the WinPepi (version 11.7) package (1). Comparisons with P values of <0.01 by Pearson's χ2 test with Bonferroni's correction for multiple comparisons were considered significant.

RESULTS

Prevalence, load, serotype, and antimicrobial resistance of Salmonella on prescald carcasses.

Salmonella was isolated from 1,386 of the 1,520 prescald carcass samples resulting in an overall Salmonella prevalence of 91.2% (Table 1). Salmonella was enumerated from 573 carcass samples and isolated from enrichment cultures of 1,379 samples. Salmonella was not isolated by enrichment culture of seven enumerable samples. At plant A, Salmonella prevalence on prescald carcasses was 97.6%, significantly higher (P < 0.01) than the 84.7% prevalence observed at plant B (Table 2). Salmonella prevalence on prescald carcasses was significantly higher (P < 0.01) during spring (100%) and winter (96.3%) than during summer (87.6%) and fall (80.8%) (Table 2). At plant B, the seasonal prevalences of 77.4% in summer and 61.6% in fall were significantly lower (P < 0.01) than the 100% prevalence during winter and spring. The plant B summer and fall prevalences were the lowest in this study and account entirely for the overall lower prevalences during summer and fall, since plant A seasonal prevalences ranged between 92.6% and 100% with the lowest (P < 0.01) seasonal prevalence occurring during winter (Table 1).

Table 1.

Prevalence of Salmonella on the carcasses of swinea

Sample point Prevalence (%) No. of serotypes isolated No. of times the following no. of serotypes was isolated per sample:
1 2 3 4 5 >5
Prescald carcasses 91.2 41 676 563 138 8 1 0
Preeviseration carcasses 19.1 24 263 25 3 0 0 0
Chilled final carcasses 3.7 9 56 0 0 0 0 0
a

A total of 1,520 samples were taken from carcasses at each sampling point (prescald, preeviseration, and after chilling).

Table 2.

Salmonella prevalence on carcasses of swine by plant, season, and both plant and season

Prevalence by plant and/or season Prescald carcass
Preevisceration carcass
Chilled final carcass
No. sampled Prevalence (%)a No. sampled Prevalence (%) No. sampled Prevalence (%)
Prevalence by plant
    Plant A 760 97.6 A 760 32.0 A 760 6.4 A
    Plant B 760 84.7 B 760 6.3 B 760 0.9 B
Prevalence by season
    Summer 380 87.6 C 380 11.1 B 380 6.3 A
    Fall 380 80.8 C 380 7.9 B 380 0.0 B
    Winter 380 96.3 B 380 26.1 A 380 3.4 A
    Spring 380 100.0 A 380 31.6 A 380 5.0 A
Prevalence by season for plant A
    Summer 190 97.9 AB 190 16.8 B 190 12.6 A
    Fall 190 100.0 A 190 13.7 B 190 0.0 B
    Winter 190 92.6 B 190 42.1 A 190 4.2 A
    Spring 190 100.0 A 190 55.3 A 190 8.9 A
Prevalence by season for plant B
    Summer 190 77.4 B 190 5.3 AB 190 0.0 A
    Fall 190 61.6 C 190 2.1 B 190 0.0 A
    Winter 190 100.0 A 190 10.0 A 190 2.6 A
    Spring 190 100.0 A 190 7.9 AB 190 1.1 A
a

Prevalence values in the same column and subheading that do not have a common letter are statistically different (P < 0.01).

Overall, 279 prescald carcasses were determined to have Salmonella loads between 1.4 and 1.9 log CFU/100 cm2 (Table 3). Salmonella loads of 2.0 to 2.9 log CFU/100 cm2 were recorded for 170 prescald carcasses, and 124 carcasses had loads greater than 2.9 log CFU/100 cm2. Similar to the prevalence results, the percentage of prescald carcasses with enumerable loads was significantly higher (P < 0.01) during spring (56.3%) and winter (47.1%) than during fall (29.7%) and summer (17.6%) (Table 4). Salmonella loads of >1.9 log CFU/100 cm2 were most frequently detected from prescald carcasses during spring (n = 114), followed by winter (n = 111), fall (n = 64), and summer (n = 5). The percentage of prescald carcasses with enumerable Salmonella was significantly higher (P < 0.01) at plant A (48.7%) than at plant B (26.7%). Additionally, enumerable Salmonella loads of >1.9 log CFU/100 cm2 were more frequently detected from prescald carcasses at plant A (n = 234) than at plant B (n = 60) (Table 4). At plant A, the highest percentages (P < 0.01) of prescald carcasses with enumerable Salmonella loads occurred during spring (65.3%) and fall (55.8%), followed by winter (47.4%) and summer (26.3%). At plant B, the percentages of prescald carcasses with enumerable Salmonella loads were significantly higher (P < 0.01) during spring (47.4%) and winter (46.8%) than during summer (8.9%) and fall (3.7%).

Table 3.

Enumeration of Salmonella on swine carcasses

Sample pointa % samples with enumerable Salmonella Frequency of enumeration (log CFU/100 cm2)
−0.8 to −0.1 0.0 to 0.9 1.0 to 1.9 2.0 to 2.9 3.0 to 3.9 4.0 to 4.9
Prescald carcassesb 37.7 n/a n/a 279 176 106 12
Preeviseration carcassesc 4.8 55 15 3 0 0 0
Chilled final carcassesc 0.6 6 1 2 0 0 0
a

A total of 1,520 samples were taken from carcasses at each sampling point.

b

The lower limit of detection for prescald carcass samples was 1.4 log CFU/100 cm2.

c

The lower limit of detection for preevisceration and chilled final carcass samples was −0.8 log CFU/100 cm2.

Table 4.

Enumeration of Salmonella on swine carcasses by plant, season, and both plant and season

Enumeration by plant and/or season Prescald carcass
Preevisceration carcass
Chilled final carcass
No. sampled % with enumerable Salmonellaa Frequency of enumeration (log CFU/100 cm2)
No. sampled % with enumerable Salmonella Frequency of enumeration (log CFU/100 cm2)
No. sampled % with enumerable Salmonella Frequency of enumeration (log CFU/100 cm2)
1.4 to 1.9 2.0 to 2.9 3.0 to 3.9 4.0 to 4.9 −0.8 to −0.1 0.0 to 0.9 1.0 to 1.9 −0.8 to −0.1 0.0 to 0.9 1.0 to 1.9
Enumeration by plant
    Plant A 760 48.7 A 136 115 101 18 760 7.9 A 46 13 1 760 0.5 A 3 1 0
    Plant B 760 26.7 B 143 55 5 0 760 1.7 B 9 2 2 760 0.7 A 3 0 2
Enumeration by season
    Summer 380 17.6 C 62 5 0 0 380 1.6 B 3 1 2 380 0.3 A 1 0 0
    Fall 380 29.7 B 49 46 18 0 380 0.3 B 1 0 0 380 0.0 A 0 0 0
    Winter 380 47.1 A 68 79 29 3 380 7.6 A 24 5 0 380 1.3 A 3 0 2
    Spring 380 56.3 A 100 40 59 15 380 9.7 A 27 9 1 380 0.8 A 2 1 0
Enumeration by season for plant A
    Summer 190 26.3 C 48 2 0 0 190 0.5 B 1 0 0 190 0.5 A 1 0 0
    Fall 190 55.8 AB 42 46 18 0 190 0.0 B 0 0 0 190 0.0 A 0 0 0
    Winter 190 47.4 B 21 41 25 3 190 14.2 A 22 5 0 190 0.0 A 0 0 0
    Spring 190 65.3 A 25 26 58 15 190 16.8 A 23 8 1 190 1.6 A 2 1 0
Enumeration by season for plant B
    Summer 190 8.9 B 14 3 0 0 190 2.6 A 2 1 2 190 0.0 A 0 0 0
    Fall 190 3.7 B 7 0 0 0 190 0.5 A 1 0 0 190 0.0 A 0 0 0
    Winter 190 46.8 A 47 38 4 0 190 1.1 A 2 0 0 190 2.6 A 3 0 2
    Spring 190 47.4 A 75 14 1 0 190 2.6 A 4 1 0 190 0.0 A 0 0 0
a

Percent enumerable Salmonella values in the same column and subheading that do not have a common letter are statistically different (P < 0.01).

Overall, 41 Salmonella serotypes were isolated from the prescald carcass samples, and multiple serotypes were isolated from the same sample more frequently (n = 710) than isolation of a single serotype from the same sample (n = 676) (Table 1). The three most prevalent serotypes on prescald carcasses were Salmonella serotypes Derby, Typhimurium, and Anatum, which were isolated from 437, 412, and 316 samples, respectively. The next most prevalent serotypes isolated from prescald carcass were Salmonella serotypes Infantis, Agona, London, and Munster, which were isolated from 178, 170, 166, and 96 samples, respectively. Some serotypes were very narrowly distributed; for example, all 75 Salmonella serotype Brandenburg prescald carcass prevalence-positive samples were from the spring 2 sampling day at plant A (Table 5). Interestingly, the most prevalent serotype on the first day of seasonal sampling at a plant was never the most prevalent on the following day. Indeed, eight different serotypes (Salmonella serotypes Agona, Anatum, Brandenburg, Derby, Infantis, London, Muenster, and Typhimurium) were the most prevalent prescald carcass serotype on at least 1 day (Table 5).

Table 5.

Salmonella serotype prevalences on swine carcasses

Plant, season, and sampling day Serotype (no. of samples isolated from carcasses)a
Prescald carcass Preevisceration carcass Chilled final carcass
Plant A
    Summer
        Day 1 MNS (67), TYP (17), ANA (17), MVD (10), SEN (8), DER (6), AGN (4), INF (4), KEN (2), CUB (1), DJU (1), NT (1) LDN (9), MNS (7), TYP (2), DER (1), II (1) JOH (14), CER (1), TYP (1)
        Day 2 DER (47), TYP (42), MNS (25), LDN (15), CER (14), KEN (13), SEN (5), ANA (4), THO (4), WOR (2), AGN (1), MBA (1), MVD (1), NT (1) ALT (5), DER (4), LDN (3), WOR (1) JOH (8)
    Fall
        Day 1 TYP (94), ANA (30), MBA (12), DER (12), LDN (8), MVD (6), KEN (3), SEN (2), INF (1), MNS(1), MO7 (1), NT (1) TYP (8), MBA (6), INF (2), DER (1) b
        Day 2 DER (43), TYP (40), ANA (21), JOH (18), MVD (16), KEN (12), MBA (9), LDN (8), CER (3), SEN (2), MNS (1), TOU (1) MBA (7), DER (2), TYP (1)
    Winter
        Day 1 ANA (35), DER (34), TYP (25), UGA (8), LDN (7), BRD (3), AGN (2) TYP (15), INF (1) TYP (1)
        Day 2 LDN (92), ANA (42), DER (5), TYP (1), NT (1) LDN (54), TYP (10), ANA (3), SEN (2), DER (1), MNC (1), UGA (1), NT (1) DER (3), TYP (2), ANA (1), MNC (1)
    Spring
        Day 1 TYP (95), PUT (55), DER (24), OHI (8), LDN (4), BRD (4), ANA (1), MNS (1) TYP (59), AGN (6), LDN (4), PUT (2), SEN(2) INF (2), TYP (1)
        Day 2 BDB (75), TYP (35), LDN (26), DER (15), BRD (14), PUT (6), OHI (4), ANA (2), CUB (2), SPA (2), INF (1), NT (1) BDB (18), DER (15), TYP (8), SPA (1), INF (1), SWZ (1) TYP (12), PUT (2)
Plant B
    Summer
        Day 1 DER (58), AGN (22), SWZ (10), TYP (4), HAD (2), OHI (2), LEX (1), LDN (1), SEN (1), NT (1) RIS (2), NT (2), DER (1)
        Day 2 AGN (30), DER (21), SPA (19), TYP (10), SWZ (3), NT (2), HEI (1), MVD (1), MNC (1) OHI (6), TYP (3), BUK (1), NT (1)
    Fall
        Day 1 ANA (28), DER (23), MIN (7), TYP (7), HAV (4), AGN (3), MBA (3), SWZ (3), KRE (2), BRD (1), JOH (1) AGN (3), DER (1)
        Day 2 TYP (24), DER (22), OHI (7), MBA (3), KRE (2), ANA (1), RIS (1), SEN (1), NT (1) HEI (1)
    Winter
        Day 1 DER (71), KRE (40), INF (19), HEI (7), TYP (5), ADE (5), LDN (4), BER (2), JAM (2), BOV (1), MEL (1), MNS (1) TYP (1), MO6 (1)
        Day 2 AGN (86), ANA (56), DER (25), INF (21), TYP (3), MEL (1), UGA (1) AGN (15), DER (1), INF (1) MO6 (5)
    Spring
        Day 1 ANA (73), INF (39), DER (24), AGN (18), TYP (9), IDK (1), LDN (1) INF (4), AGN (3), TYP (2), ANA (1), DER (1), SWZ (1) TYP (1)
        Day 2 INF (93), DER (7), ANA (6), AGN (4), MBA (2), JOH (1), MNC (1), TYP (1) INF (4) DER (1)
a

Salmonella serotype abbreviations: ADE, Adelaide; AGN, Agona; ALT, Altona; ANA, Anatum; BER, Berta; BOV, Bovismorbificans; BDB, Brandenburg; BRD, Bredeney; BUK, Bukuru; CER, Cerro; CUB, Cubana; DER, Derby; DJU, Djugu; HAD, Hadar; HAV, Havana; HEI, Heidelberg; IDK, Idikan; II, II (3,10;lv;enx); INF, Infantis; JAM, Jamaica; JOH, Johannesburg; KEN, Kentucky; KRE, Krefeld; LEX, Lexington; LDN, London; MBA, Mbandaka; MEL, Meleagridis; MIN, Minnesota; MO6, monophasic (6,7:−:1,5); MO7, monophasic (7:z10:−); MVD, Montevideo; MNC, Muenchen; MNS, Muenster; NT, not typeable; OHI, Ohio; PUT, Putten; RIS, Rissen; SPA, Saintpaul; SWZ, Schwarzengrund; SEN, Senftenberg; THO, Thompson; TOU, Tounouma; TYP, Typhimurium; UGA, Uganda; WOR, Worthington.

b

−, Salmonella was not isolated.

Limited resources prevented antimicrobial susceptibility testing of all 5,318 prescald carcass Salmonella isolates. Replica plating onto media containing AMP, KAN, or TET determined that 4,092 isolates were resistant to at least one of these antimicrobial agents. A total of 697 of these resistant isolates were selected for antimicrobial susceptibility testing as described in Materials and Methods. Of these 697 isolates, 496 (71.2%) were MDR (resistant to 3 or more classes of antimicrobial agents) (Table 6). A total of 255 (36.6%) isolates were resistant to AMP, CHL, STR, FIS, and TET (ACSSuTr), their serotypes were as follows: Salmonella serotypes Typhimurium (n = 218), Agona (n = 27), Derby (n = 3), Ohio (n = 2), Heidelberg (n = 2), London (n = 1), and Rissen (n = 1) and not typeable (n = 1). Fifty-one isolates (7.3%) were resistant to the expanded-spectrum cephalosporin AXO, and their serotypes were as follows: Salmonella serotypes Agona (n = 27), Seftenberg (n = 11), London (n = 5), Ohio (n = 2), Heidelberg (n = 2), Derby (n = 1), Havana (n = 1), London (n = 1), and Rissen (n = 1). Three isolates (2 Salmonella Heidelberg isolates and 1 Salmonella Derby isolate) were resistant to an antimicrobial agent from all eight classes tested.

Table 6.

Antimicrobial susceptibilities of selected Salmonella isolates

Sample point and Salmonella serotype No. of isolates tested % MDRa % ACSSuT resistantb % resistant isolates by class and antimicrobial agent
Aminoglycoside
β-Lac/inhib. comboe AMC Cephem
Folate pathway inhibitor
Penicillin
Phenicol
Quinolone
Tetracycline
AMI GEN KAN STR FOX TIO AXO FIS COT AMP CHL CIP NAL TET
Prescald carcasses 697 71.2 36.6 0.3 1.1 7.6 61.5 14.1 7.7 6.5 7.3 72.6 5.0 51.8 44.3 0.0 0.6 82.5
    Typhimurium 274 98.2 79.6 0.0 0.0 0.4 82.8 15.7 0.4 0.0 0.0 98.9 0.0 97.8 96.4 0.0 0.0 98.5
    Derby 138 92.8 2.2 0.7 0.7 1.4 94.2 1.4 1.4 1.4 0.7 92.0 2.2 4.3 2.2 0.0 1.4 99.3
    London 49 16.3 2.0 0.0 0.0 0.0 4.1 10.2 10.2 10.2 10.2 26.5 0.0 14.3 2.0 0.0 0.0 28.6
    Anatum 42 2.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 2.4 2.4 0.0 0.0 40.5
    Agona 38 84.2 71.1 0.0 0.0 68.4 81.6 71.1 71.1 57.9 71.1 92.1 71.1 73.7 71.1 0.0 0.0 97.4
    Infantis 31 9.7 0.0 0.0 0.0 0.0 9.7 3.2 3.2 3.2 3.2 9.7 6.5 3.2 6.5 0.0 0.0 64.5
    Putten 24 95.8 0.0 0.0 0.0 29.2 0.0 8.3 0.0 0.0 0.0 100.0 0.0 87.5 0.0 0.0 0.0 100.0
    Senftenberg 17 88.2 0.0 0.0 11.8 5.9 82.4 64.7 64.7 58.8 64.7 88.2 5.9 76.5 5.9 0.0 0.0 94.1
    Othersc 84 20.2 7.1 1.2 6.0 19.0 26.2 8.3 8.3 6.0 7.1 21.4 2.4 19.0 11.9 0.0 2.4 47.6
Preevisceration carcasses 113 47.8 23.0 0.0 0.9 12.4 46.0 8.8 2.7 1.8 0.9 75.2 1.8 33.6 33.6 0.0 0.9 81.4
    London 32 3.1 0.0 0.0 0.0 0.0 3.1 0.0 0.0 0.0 0.0 93.8 0.0 0.0 0.0 0.0 0.0 93.8
    Typhimurium 25 88.0 76.0 0.0 0.0 8.0 88.0 16.0 0.0 0.0 0.0 96.0 0.0 84.0 84.0 0.0 0.0 88.0
    Ohio 8 100.0 0.0 0.0 0.0 25.0 100.0 37.5 0.0 0.0 0.0 62.5 0.0 62.5 62.5 0.0 0.0 100.0
    Agona 6 50.0 16.7 0.0 0.0 16.7 50.0 16.7 16.7 0.0 16.7 100.0 16.7 16.7 16.7 0.0 0.0 100.0
    Bukuru 6 100.0 100.0 0.0 0.0 100.0 100.0 0.0 0.0 0.0 0.0 100.0 0.0 100.0 100.0 0.0 0.0 100.0
    Derby 6 100.0 0.0 0.0 0.0 0.0 100.0 0.0 0.0 0.0 0.0 100.0 0.0 0.0 0.0 0.0 0.0 100.0
    Infantis 4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
    Senftenberg 4 75.0 0.0 0.0 0.0 0.0 50.0 0.0 0.0 0.0 0.0 75.0 0.0 25.0 50.0 0.0 0.0 75.0
    Othersd 22 22.7 0.0 0.0 4.5 13.6 18.2 9.1 9.1 9.1 0.0 22.7 4.5 18.2 13.6 0.0 4.5 50.0
Chilled final carcass 102 77.5 13.7 0.0 0.0 1.0 73.5 2.9 0.0 0.0 0.0 95.1 0.0 23.5 18.6 0.0 0.0 98.0
    Johannesburg 66 74.2 0.0 0.0 0.0 0.0 74.2 0.0 0.0 0.0 0.0 100.0 0.0 0.0 0.0 0.0 0.0 100.0
    Typhimurium 18 94.4 77.7 0.0 0.0 5.6 83.3 16.7 0.0 0.0 0.0 100.0 0.0 94.4 94.4 0.0 0.0 94.4
    monophasic (6,7:−:1,5) 5 100.0 0.0 0.0 0.0 0.0 100.0 0.0 0.0 0.0 0.0 100.0 0.0 100.0 0.0 0.0 0.0 100.0
    Cerro 4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 100.0
    Derby 4 75.0 0.0 0.0 0.0 0.0 75.0 0.0 0.0 0.0 0.0 75.0 0.0 0.0 0.0 0.0 0.0 75.0
    Infantis 2 100.0 0.0 0.0 0.0 0.0 100.0 0.0 0.0 0.0 0.0 100.0 0.0 0.0 100.0 0.0 0.0 100.0
    Putten 2 100.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 100.0 0.0 100.0 0.0 0.0 0.0 100.0
    Muenchen 1 100.0 0.0 0.0 0.0 0.0 100.0 0.0 0.0 0.0 0.0 100.0 0.0 0.0 0.0 0.0 0.0 100.0
a

Percentage of isolates resistant to three or more classes of antimicrobials.

b

Percentage of isolates resistant to AMP, CHL, STR, FIS, and TET.

c

Other serotypes (number of isolates tested) were as follows: Muenster (11), Bredeney (9), Kentucky (7), Montevideo (6), Brandenburg (5), Saintpaul (5), Ohio (4), Cerro (3), Heidelburg (3), Krefeld (3), Mbandaka (3), nontypeable (3), Cubana (2), Johannesburg (2), Schwarzengrund (2), Uganda (2), Worthington (2), Adelaide (1), Berta (1), Bovismorbificans (1), Havana (1), Idikan (1), Jamaica (1), Meleagridis (1), Minnesota (1), monophasic [7:z10:−] (1), Muenchen (1), Rissen (1), and Tounouma (1).

d

Other serotypes (number of isolates tested) were as follows: Altona (3), Mbandaka (3), nontypeable (3), Rissen (2), Saintpaul (2), Anatum (1), Brandenburg (1), monophasic [6,7:−: 1,5] (1), Muenchen (1), Muenster (1), Putten (1), II (1), Uganda (1), and Worthington (1).

e

β-Lac/inhib. combo, β-lactam/β-lactamase inhibitor combination.

Prevalence, load, serotype, and antimicrobial resistance of Salmonella on preevisceration carcasses.

Salmonella was isolated from 291 (19.1%) preevisceration carcasses (Table 1). Salmonella was enumerated from 73 samples and isolated from enrichment cultures of 288 samples, but Salmonella was not isolated by enrichment culture from three of the enumerable samples. At plant A, Salmonella prevalence on preevisceration carcasses was 32.0%, significantly higher (P < 0.01) than the 6.3% prevalence observed at plant B (Table 2). Salmonella prevalence on preevisceration carcasses was significantly higher (P < 0.01) during spring (31.6%) and winter (26.1%) than during summer (11.1%) and fall (7.9%) (Table 2). The seasonal differences at plant A contributed greatly to the overall seasonal differences, since the prevalences were significantly higher at plant A (P < 0.01) during winter (42.1%) and spring (55.3%) than during summer (16.8%) and fall (13.7%), while at plant B the seasonal prevalences were all 10.0% or less (Table 2).

At plant A, 7.9% of preevisceration carcasses had enumerable Salmonella, significantly higher (P < 0.01) than the 1.7% of enumerable preevisceration carcasses at plant B (Table 4). The percentage of preevisceration carcasses with enumerable loads was significantly higher (P < 0.01) during spring (9.7%) and winter (7.6%) than during summer (1.6%) and fall (0.3%) (Table 4). The majority of the enumerable samples (80.8%) were from two seasons at plant A, spring and winter. Accordingly, the highest percentages of preevisceration carcasses with enumerable Salmonella by season and plant were spring at plant A (16.8%) and winter at plant A (14.2%), while the percentage of preevisceration carcasses with enumerable Salmonella was ≤2.6 for all seasons at plant B and during the summer and fall seasons at plant A (Table 4). Salmonella loads were <0.0 log CFU/100 cm2 on 55 of the enumerable preevisceration carcasses. Only 18 preevisceration carcasses had loads of ≥0.0 log CFU/100 cm2 (Table 3).

Overall, 24 Salmonella serotypes were isolated from the preevisceration carcass samples, and multiple serotypes were isolated from the same sample less frequently (n = 28) than isolation of a single serotype from the same sample (n = 263) (Table 1). The two most prevalent serotypes on preevisceration carcasses were Salmonella serotypes Typhimurium and London, isolated from 109 and 70 samples, respectively. The next most prevalent serotypes isolated from preevisceration carcasses were Salmonella serotypes Derby, Agona, and Brandenburg, isolated from 28, 27, and 18 samples, respectively. Nonuniform distribution was observed for each of the five most prevalent serotypes from Salmonella-positive preevisceration carcasses, >50% of the positive samples were from one sampling day, and >75% of the positive samples were from a single plant (Table 5). Indeed, 59 of the 109 Salmonella Typhimurium-positive preevisceration carcasses were from a single day (spring day 1) at plant A, and 103 were from plant A (Table 5). Additionally, 54 of the 70 Salmonella London-positive preevisceration carcasses were from a single day at plant A, winter day 2 (Table 5). All 18 of the Salmonella Brandenburg-positive preevisceration carcass samples were obtained from plant A during spring day 1.

Replica plating on media containing AMP, KAN, or TET determined that 454 of the 623 preevisceration Salmonella isolates were resistant to at least one of these antimicrobial agents. One hundred thirteen of the resistant isolates were selected for more detailed antimicrobial susceptibility testing, and 54 (47.8%) isolates were MDR (Table 6). Twenty-six (23.0%) isolates were ACSSuTr, their serotypes were as follows: Salmonella serotypes Typhimurium (n = 19), Bukuru (n = 6), and Agona (n = 1). Only one preevisceration isolate tested was AXO resistant, and its serotype was Salmonella Agona (Table 6).

Prevalence, load, serotype, and antimicrobial resistance of Salmonella on chilled final carcasses.

Salmonella was isolated from 56 (3.7%) of the chilled final carcasses (Table 1). Salmonella was isolated from enrichment cultures of 56 samples, including all nine samples enumerated. Plant A chilled final carcasses accounted for 49 of the prevalence positive carcasses. Accordingly, the 6.4% prevalence of Salmonella on final carcasses from plant A was significantly higher (P < 0.01) than the 0.9% prevalence from plant B (Table 2). Salmonella prevalence on chilled final carcasses was significantly lower (P < 0.01) during fall (0.0%) than during summer (6.3%), spring (5.0%), and winter (3.4%) (Table 2). At plant A, the seasonal prevalence of Salmonella from final carcasses was significantly higher (P > 0.01) during summer (12.6%), winter (4.2%), and spring (8.9%) than during fall (0.0%). At plant B, the prevalence of Salmonella from final carcasses ranged from 2.6% in winter to 0.0% in summer and fall but did not differ among seasons (P > 0.01). Salmonella was enumerated from only nine final carcass samples, and significant differences were not observed between the plants or seasons (Table 4).

Nine serotypes were isolated from the chilled final carcasses, and only one serotype was isolated from each of the positive samples (Table 1). The serotypes (the number of final carcasses each serotype was isolated from is shown in parentheses) were as follows: Salmonella serotypes Johannesburg (22), Typhimurium (18), monophasic variant with the antigenic formula of 6,7:−:1,5 (5), Derby (4), Infantis (2), Putten (2), Anatum (1), Cerro (1), and Muenchen (1). Only the Salmonella serotypes Johannesburg, Typhimurium, and Derby were isolated on more than one sampling day (Table 5).

Replica plating of the 150 chilled final carcass Salmonella isolates obtained during this study determined that 147 resistant were to AMP, KAN, or TET. One hundred two final carcass Salmonella isolates were selected for antimicrobial susceptibility testing, and 79 (77.5%) were MDR (Table 6). MDR Salmonella was isolated from 3.2% of the 1,520 chilled final carcasses sampled in this study. Fourteen chilled final carcass isolates, all Salmonella serotype Typhimurium, were ACSSuTr (Table 6). None of the final carcass isolates were AXO resistant.

DISCUSSION

This study demonstrated that Salmonella was present on the prescald carcasses of a large majority (91.2%) of hogs entering two large U.S. commercial pork processing plants. The prescald carcass samples obtained in this study represent the Salmonella present on the hides of swine entering the processing plant, since no interventions were performed prior to sampling of prescald carcasses nor were the animals skinned. Known Salmonella contamination sources prior to entering the processing plant include swine production farms, transport trailers, and lairage pens (25, 26, 35, 42, 43, 55). Transportation and lairage are likely sources of contamination, since exposure of uninfected swine to contaminated transport trailers or lairage pens results in rapid infection of lymph nodes, cecal contents, and rectal contents (26, 28, 45, 46, 55, 57, 59). Other potential sources of prescald carcass contamination include belts or elevators colonized by Salmonella. The significantly higher (P < 0.01) Salmonella prevalence on prescald carcasses sampled at plant A (Table 2) could be caused by any of the afore mentioned contamination sources, but the sampling protocol used in this study did not account for any of these factors, so conclusions on the sources of contamination were not made. Sampling was performed each season to control for reported seasonal variation of Salmonella prevalence (34, 38). Salmonella prevalence on prescald carcasses was statistically lower (P < 0.01) during summer and fall (Table 2). However, conclusions relating to the seasonal prevalence of Salmonella should not be made, since each plant was sampled only on two consecutive days each season, and additional sampling throughout each season would be required to determine whether seasonal variations existed.

In a study published in 1995, Saide-Albornoz et al. (56) observed a 4.4% Salmonella prevalence on preevisceration carcasses by sampling 100 cm2 on 270 carcasses at three large U.S. pork processing plants. Bolton et al. (7), in a study published in 2002, found no Salmonella when they sampled 50 cm2 on 60 carcasses at a small Irish pork processing plant. We found that 19.1% of preevisceration carcasses were contaminated with Salmonella (Table 1). Our observation of a higher prevalence than previously reported could be due to changes in U.S. slaughter practices since 1995 or differences between U.S. and Irish practices. Alternatively, the higher prevalence could also be attributed to different culture methods (including the incorporation of immunomagnetic separation in the Salmonella prevalence method), increased sampling breadth and depth (1,520 samples taken on 16 days), or sampling of a much larger carcass surface area (4,000 cm2). Indeed, our intensive sampling scheme not only revealed the higher than expected overall prevalence but also revealed large daily variations in the Salmonella preevisceration carcass prevalence at both plants. On 13 of the 16 sampling days, the Salmonella preevisceration carcass prevalence ranged from 1.1 to 20.0%, but on three sampling days (all at plant A), the Salmonella preevisceration carcass prevalence ranged from 40.0 to 70.5% (data not shown).

As mentioned before, this study was not designed to identify the source of Salmonella contamination, so the causes of the significantly higher (P < 0.01) preevisceration Salmonella prevalence at plant A (Table 1) could not be definitively identified. However, a possible explanation is that plant A interventions were less effective than those at plant B. Alternatively, the interventions employed at both plants could be equally effective but the Salmonella loads present on plant A prescald carcasses were higher than those at plant B and these higher loads could be above the level that the interventions can remove. Indeed, enumeration of Salmonella on prescald carcasses revealed that the 2 days (plant A, winter, sampling day 2 and plant A, spring, sampling day 1) with the highest Salmonella enumerable loads on prescald carcasses were the 2 days with the highest preevisceration carcass prevalences (data not shown). Additionally, on these 2 days, the serotypes most responsible for the elevated Salmonella loads on prescald carcasses (data not shown) were the predominate serotype on the preevisceration carcasses (Table 5). These results suggest that elevated concentrations of Salmonella on prescald carcasses may overwhelm interventions and carry over to an increased prevalence on preevisceration carcasses. The prescald and preevisceration samples were obtained concurrently, but no attempts were made to sample the same carcasses at each point. Therefore, samples taken at each point in this study were considered independent, and this prevented us from conclusively linking increased load on plant A prescald carcasses to increased prevalence on plant A preevisceration carcasses. These results demonstrate the need for comprehensive research, including enumeration of Salmonella on carcasses, to evaluate the currently poorly defined antimicrobial abilities, limitations, and potential for cross contamination of each step in the scalding, singeing, and polishing processes. These results seem intuitive, since the carcasses were not skinned, and they agree with comparable studies of beef harvest indicating that incoming hide load is positively correlated with subsequent carcass contamination (3, 10, 51). As has been hypothesized for beef harvest, final carcass contamination may result from an incoming pathogen load high enough to overwhelm the capabilities of the processing interventions in place.

The overall prevalence of Salmonella on chilled final carcasses sampled in this study was 3.7%, similar to the 2 to 4% yearly prevalence from 2001 to 2009 reported by FSIS (33). In our study, final carcasses that were chilled at least overnight were randomly sampled in the cooler. As observed for prescald and preevisceration carcasses, the prevalence of Salmonella on chilled final carcasses was significantly higher (P < 0.01) at plant A (Table 2). The final carcasses sampled were independent of the prescald and preevisceration carcass samples. However, there are several possible explanations for the significantly higher Salmonella prevalences on plant A carcasses at each of the points sampled in this study (Table 2); possible explanations include greater contamination of hides entering the plant A, cross contamination at plant A, and/or differences in antimicrobial impact of different processing steps, such as blast chilling in plant B. Identification of the source(s) of Salmonella contamination was beyond the scope of this study, but we note that the largest difference in Salmonella prevalence between plants was on preevisceration carcasses (Table 3).

Salmonella Typhimurium was either the most prevalent or second most prevalent serotype isolated from each of the sampling points examined in this study. Salmonella Typhimurium is among the most prevalent serotypes isolated from both swine veterinary samples and human clinical samples (16, 31). We identified the ACSSuTr phenotype from >76% of the Salmonella Typhimurium isolates tested from all three sampling points (Table 6), which is higher than the 48.9% prevalence of the ACSSuTr phenotype among veterinary Salmonella Typhimurium isolates tested by the National Antimicrobial Resistance Monitoring System (NARMS) from 1998 to 2009 (15). This discrepancy raises the possibility that swine carcasses are more frequently contaminated with ACSSuTr Salmonella Typhimurium than NARMS testing of veterinary isolates indicates. However, we note that the isolates we selected for antimicrobial susceptibility testing were first screened for resistance, and this may have increased the percentage of the ACSSuTr phenotype.

The ACSSuTr phenotype has been linked to the presence of either of two genetic elements: Salmonella genomic island I or IncA/C MDR-AmpC-encoding plasmids (36). IncA/C MDR-AmpC-encoding plasmids may also harbor the blaCMY-2 gene that encodes resistance ESCs, including AXO (11, 12, 22). AXO resistance was identified in 1.9% of veterinary swine Salmonella isolates tested by NARMS from 1998 to 2009 (15) but was identified from 5.7% of the isolates tested in this study. The serotypes with an AXO-resistant isolate identified in this study were Salmonella serotypes Agona, Havana, Heidelburg, Ohio, Rissen, and Senftenberg (Table 6). Salmonella serotypes Agona and Heidelburg have previously been identified as serotypes contributing significantly to the total amount of ESC-resistant Salmonella (32). None of the final carcass isolates tested were AXO resistant. This result was not unexpected, since only 3.7% of final carcasses were positive for Salmonella, the final carcass samples were independent of the prescald and preevisceration samples, and the serotypes of AXO-resistant prescald and preevisceration isolates (Salmonella serotypes Agona, Havana, Heidelburg, Ohio, Rissen, and Senftenberg) were not among the final carcass serotypes identified (Table 5).

The Salmonella prevalences and number of serotypes detected at each sampling point in this study are likely underreported, since only one method of selective enrichment was used in this study. Indeed, the direct plating method used in this study for enumeration demonstrated shortcomings of selective enrichment, since there were 10 samples (7 prescald samples and 3 preevisceration samples) from which Salmonella was enumerated by direct plating but Salmonella was not isolated from selective enrichment. Studies of swine fecal samples subjected to multiple methods of selective enrichment for isolation of Salmonella have demonstrated that no culture method is 100% sensitive and that the serotypes isolated from the same sample differed by the culture method used, suggesting that serotypes differ in their susceptibilities to selective agents in enrichment media (24, 49, 54). The Salmonella serotype Choleraesuis, which is associated with swine, has been demonstrated to be sensitive to selective enrichment methods (2, 54). Salmonella Choleraesuis was not isolated from any of the 4,560 carcasses sampled during this study, suggesting that the selective enrichment used in this study may not be suitable for the isolation of this serotype.

In summary, the results of this study indicate that hogs entering processing plants have a very high incidence of Salmonella on their skins at sometimes high levels. The interventions used by pork processing plants greatly reduced the prevalence of Salmonella on final carcasses, but Salmonella was found on a low percentage of finished, chilled carcasses. The presence of MDR Salmonella on the finished carcasses, albeit at low prevalence, demonstrates that additional interventions should be considered in pork processing plants to further reduce the risk of invasive salmonellosis caused by pork products.

ACKNOWLEDGMENTS

This project was funded in part by The Pork Checkoff.

We thank Julie Dyer and Kim Kucera for technical support. We thank Michael Guerini for his scientific contributions. We thank Marilyn Bierman for administrative assistance.

Mention of trade names, proprietary products, or specified equipment does not constitute a guarantee or warranty by the USDA and does not imply approval to the exclusion of other products that may be suitable.

Footnotes

Published ahead of print 10 February 2012

REFERENCES

  • 1. Abramson JH. 2011. WINPEPI updated: computer programs for epidemiologists, and their teaching potential. Epidemiol. Perspect. Innov. 8:1. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 2. Anderson RC, et al. 2000. Assessment of the long-term shedding pattern of Salmonella serovar choleraesuis following experimental infection of neonatal piglets. J. Vet. Diagn. Invest. 12:257–260 [DOI] [PubMed] [Google Scholar]
  • 3. Arthur TM, et al. 2007. Transportation and lairage environment effects on prevalence, numbers, and diversity of Escherichia coli O157:H7 on hides and carcasses of beef cattle at processing. J. Food Prot. 70:280–286 [DOI] [PubMed] [Google Scholar]
  • 4. Barkocy-Gallagher GA, et al. 2003. Seasonal prevalence of Shiga toxin-producing Escherichia coli, including O157:H7 and non-O157 serotypes, and Salmonella in commercial beef processing plants. J. Food Prot. 66:1978–1986 [DOI] [PubMed] [Google Scholar]
  • 5. Barron UG, et al. 2009. Estimation of prevalence of Salmonella on pig carcasses and pork joints, using a quantitative risk assessment model aided by meta-analysis. J. Food Prot. 72:274–285 [DOI] [PubMed] [Google Scholar]
  • 6. Berge AC, Dueger EL, Sischo WM. 2006. Comparison of Salmonella enterica serovar distribution and antibiotic resistance patterns in wastewater at municipal water treatment plants in two California cities. J. Appl. Microbiol. 101:1309–1316 [DOI] [PubMed] [Google Scholar]
  • 7. Bolton DJ, et al. 2002. Washing and chilling as critical control points in pork slaughter hazard analysis and critical control point (HACCP) systems. J. Appl. Microbiol. 92:893–902 [DOI] [PubMed] [Google Scholar]
  • 8. Bosilevac JM, Guerini MN, Kalchayanand N, Koohmaraie M. 2009. Prevalence and characterization of salmonellae in commercial ground beef in the United States. Appl. Environ. Microbiol. 75:1892–1900 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 9. Brichta-Harhay DM, et al. 2007. Enumeration of Salmonella and Escherichia coli O157:H7 in ground beef, cattle carcass, hide and faecal samples using direct plating methods. J. Appl. Microbiol. 103:1657–1668 [DOI] [PubMed] [Google Scholar]
  • 10. Brichta-Harhay DM, et al. 2008. Salmonella and Escherichia coli O157:H7 contamination on hides and carcasses of cull cattle presented for slaughter in the United States: an evaluation of prevalence and bacterial loads by immunomagnetic separation and direct plating methods. Appl. Environ. Microbiol. 74:6289–6297 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 11. Call DR, et al. 2010. blaCMY-2-positive IncA/C plasmids from Escherichia coli and Salmonella enterica are a distinct component of a larger lineage of plasmids. Antimicrob. Agents Chemother. 54:590–596 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 12. Carattoli A, et al. 2006. Replicon typing of plasmids encoding resistance to newer beta-lactams. Emerg. Infect. Dis. 12:1145–1148 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 13. CDC 2011. Estimates of foodborne illness in the United States. Centers for Disease Control, US Department of Health and Human Services, Atlanta, GA [Google Scholar]
  • 14. CDC 2011. Foodborne Outbreak Online Database. Centers for Disease Control, US Department of Health and Human Services, Atlanta, GA: http://wwwn.cdc.gov/foodborneoutbreaks/Default.aspx [Google Scholar]
  • 15. CDC 2011. National Antimicrobial Resistance Monitoring System 2009 Executive Report. Centers for Disease Control, US Department of Health and Human Services, Atlanta, GA [Google Scholar]
  • 16. CDC 2008. National Antimicrobial Resistance Monitoring System for enteric bacteria (NARMS): human isolates final report, 2005. Centers for Disease Control, US Department of Health and Human Services, Atlanta, GA [Google Scholar]
  • 17. CDC 2008. Salmonella surveillance: annual summary, 2006. Centers for Disease Control, US Department of Health and Human Services, Atlanta, GA [Google Scholar]
  • 18. CDC 2010. Surveillance for foodborne disease outbreaks - United States, 2007. MMWR Morb. Mortal. Wkly. Rep. 59:973–980 [PubMed] [Google Scholar]
  • 19. Cohen MB. 1991. Etiology and mechanisms of acute infectious diarrhea in infants in the United States. J. Pediatr. 118:S34–S39 [DOI] [PubMed] [Google Scholar]
  • 20. Crump JA, et al. 2011. Antimicrobial resistance among invasive nontyphoidal Salmonella enterica in the United States, National Antimicrobial Resistance Monitoring System, 1996–2007. Antimicrob. Agents Chemother. 55:1148–1154 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 21. Cudjoe KS, Krona R. 1997. Detection of Salmonella from raw food samples using Dynabeads anti-Salmonella and a conventional reference method. Int. J. Food Microbiol. 37:55–62 [DOI] [PubMed] [Google Scholar]
  • 22. Daniels JB, Call DR, Besser TE. 2007. Molecular epidemiology of blaCMY-2 plasmids carried by Salmonella enterica and Escherichia coli isolates from cattle in the Pacific Northwest. Appl. Environ. Microbiol. 73:8005–8011 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 23. Davies PR. 2011. Intensive swine production and pork safety. Foodborne Pathog. Dis. 8:189–201 [DOI] [PubMed] [Google Scholar]
  • 24. Davies PR, et al. 2000. Comparison of methods for isolating Salmonella bacteria from faeces of naturally infected pigs. J. Appl. Microbiol. 89:169–177 [DOI] [PubMed] [Google Scholar]
  • 25. Dickson JS, Hurd HS, Rostagno MH. 2002. Salmonella in the pork production chain. National Pork Board, Des Moines, IA: http://www.pork.org/filelibrary/Factsheets/PorkSafety/Pork%20Production%20Chain.pdf [Google Scholar]
  • 26. Dorr PM, et al. 2009. Longitudinal study of Salmonella dispersion and the role of environmental contamination in commercial swine production systems. Appl. Environ. Microbiol. 75:1478–1486 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 27. Duffy EA, et al. 2001. Extent of microbial contamination in United States pork retail products. J. Food Prot. 64:172–178 [DOI] [PubMed] [Google Scholar]
  • 28. Duggan SJ, et al. 2010. Tracking the Salmonella status of pigs and pork from lairage through the slaughter process in the Republic of Ireland. J. Food Prot. 73:2148–2160 [DOI] [PubMed] [Google Scholar]
  • 29. Echeita MA, Herrera S, Garaizar J, Usera MA. 2002. Multiplex PCR-based detection and identification of the most common Salmonella second-phase flagellar antigens. Res. Microbiol. 153:107–113 [DOI] [PubMed] [Google Scholar]
  • 30. FDA 2008. NARMS retail meat annual report, 2005. US Food and Drug Administration, Washington, DC [Google Scholar]
  • 31. Foley SL, Lynne AM, Nayak R. 2008. Salmonella challenges: prevalence in swine and poultry and potential pathogenicity of such isolates. J. Anim. Sci. 86:E149–E162 [DOI] [PubMed] [Google Scholar]
  • 32. Frye JG, Fedorka-Cray PJ. 2007. Prevalence, distribution and characterisation of ceftiofur resistance in Salmonella enterica isolated from animals in the USA from 1999 to 2003. Int. J. Antimicrob. Agents 30:134–142 [DOI] [PubMed] [Google Scholar]
  • 33. FSIS 2010. Serotypes profile of Salmonella isolates from meat and poultry products. Food Safety and Inspection Service, US Department of Agriculture, Washington, DC [Google Scholar]
  • 34. Funk JA, Davies PR, Gebreyes W. 2001. Risk factors associated with Salmonella enterica prevalence in three-site swine production systems in North Carolina, USA. Berl. Munch. Tierarztl. Wochenschr. 114:335–338 [PubMed] [Google Scholar]
  • 35. Gebreyes WA, et al. 2004. Salmonella enterica serovars from pigs on farms and after slaughter and validity of using bacteriologic data to define herd Salmonella status. J. Food Prot. 67:691–697 [DOI] [PubMed] [Google Scholar]
  • 36. Glenn LM, et al. 2011. Analysis of antimicrobial resistance genes detected in multidrug-resistant Salmonella enterica serovar Typhimurium isolated from food animals. Microb. Drug Resist. 17:407–418 [DOI] [PubMed] [Google Scholar]
  • 37. Guerrant RL, et al. 2001. Practice guidelines for the management of infectious diarrhea. Clin. Infect. Dis. 32:331–351 [DOI] [PubMed] [Google Scholar]
  • 38. Hald T, Andersen JS. 2001. Trends and seasonal variations in the occurrence of Salmonella in pigs, pork and humans in Denmark, 1995–2000. Berl. Munch. Tierarztl. Wochenschr. 114:346–349 [PubMed] [Google Scholar]
  • 39. Helms M, Simonsen J, Molbak K. 2004. Quinolone resistance is associated with increased risk of invasive illness or death during infection with Salmonella serotype Typhimurium. J. Infect. Dis. 190:1652–1654 [DOI] [PubMed] [Google Scholar]
  • 40. Herrera-Leon S, et al. 2004. Multiplex PCR for distinguishing the most common phase-1 flagellar antigens of Salmonella spp. J. Clin. Microbiol. 42:2581–2586 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 41. Herrera-Leon S, et al. 2007. Blind comparison of traditional serotyping with three multiplex PCRs for the identification of Salmonella serotypes. Res. Microbiol. 158:122–127 [DOI] [PubMed] [Google Scholar]
  • 42. Hurd HS, McKean JD, Griffith RW, Wesley IV, Rostagno MH. 2002. Salmonella enterica infections in market swine with and without transport and holding. Appl. Environ. Microbiol. 68:2376–2381 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 43. Hurd HS, McKean JD, Wesley IV, Karriker LA. 2001. The effect of lairage on Salmonella isolation from market swine. J. Food Prot. 64:939–944 [DOI] [PubMed] [Google Scholar]
  • 44. Jones TF, et al. 2008. Salmonellosis outcomes differ substantially by serotype. J. Infect. Dis. 198:109–114 [DOI] [PubMed] [Google Scholar]
  • 45. Larsen ST, Hurd HS, McKean JD, Griffith RW, Wesley IV. 2004. Effect of short-term lairage on the prevalence of Salmonella enterica in cull sows. J. Food Prot. 67:1489–1493 [DOI] [PubMed] [Google Scholar]
  • 46. Larsen ST, et al. 2003. Impact of commercial preharvest transportation and holding on the prevalence of Salmonella enterica in cull sows. J. Food Prot. 66:1134–1138 [DOI] [PubMed] [Google Scholar]
  • 47. Lee LA, Puhr ND, Maloney EK, Bean NH, Tauxe RV. 1994. Increase in antimicrobial-resistant Salmonella infections in the United States, 1989–1990. J. Infect. Dis. 170:128–134 [DOI] [PubMed] [Google Scholar]
  • 48. Liu HH. 2010. Safety profile of the fluoroquinolones: focus on levofloxacin. Drug Saf. 33:353–369 [DOI] [PubMed] [Google Scholar]
  • 49. Love BC, Rostagno MH. 2008. Comparison of five culture methods for Salmonella isolation from swine fecal samples of known infection status. J. Vet. Diagn. Invest. 20:620–624 [DOI] [PubMed] [Google Scholar]
  • 50. Mollenkopf DF, Kleinhenz KE, Funk JA, Gebreyes WA, Wittum TE. 2011. Salmonella enterica and Escherichia coli harboring blaCMY in retail beef and pork products. Foodborne Pathog. Dis. 8:333–336 [DOI] [PubMed] [Google Scholar]
  • 51. Nou X, et al. 2003. Effect of chemical dehairing on the prevalence of Escherichia coli O157:H7 and the levels of aerobic bacteria and enterobacteriaceae on carcasses in a commercial beef processing plant. J. Food Prot. 66:2005–2009 [DOI] [PubMed] [Google Scholar]
  • 52. Nucera DM, Maddox CW, Hoien-Dalen P, Weigel RM. 2006. Comparison of API 20E and invA PCR for identification of Salmonella enterica isolates from swine production units. J. Clin. Microbiol. 44:3388–3390 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 53. Rahn K, et al. 1992. Amplification of an invA gene sequence of Salmonella typhimurium by polymerase chain reaction as a specific method of detection of Salmonella. Mol. Cell. Probes 6:271–279 [DOI] [PubMed] [Google Scholar]
  • 54. Rostagno MH, Gailey JK, Hurd HS, McKean JD, Leite RC. 2005. Culture methods differ on the isolation of Salmonella enterica serotypes from naturally contaminated swine fecal samples. J. Vet. Diagn. Invest. 17:80–83 [DOI] [PubMed] [Google Scholar]
  • 55. Rostagno MH, et al. 2003. Preslaughter holding environment in pork plants is highly contaminated with Salmonella enterica. Appl. Environ. Microbiol. 69:4489–4494 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 56. Saide-Albornoz JJ, Knipe CL, Murano EA, Beran GW. 1995. Contamination of pork carcasses, during slaughter, fabrication and chilled storage. J. Food Prot. 58:993–997 [DOI] [PubMed] [Google Scholar]
  • 57. Schmidt PL, O'Connor AM, McKean JD, Hurd HS. 2004. The association between cleaning and disinfection of lairage pens and the prevalence of Salmonella enterica in swine at harvest. J. Food Prot. 67:1384–1388 [DOI] [PubMed] [Google Scholar]
  • 58. Sjolund-Karlsson M, et al. 2010. Salmonella isolates with decreased susceptibility to extended-spectrum cephalosporins in the United States. Foodborne Pathog. Dis. 7:1503–1509 [DOI] [PubMed] [Google Scholar]
  • 59. Swanenburg M, Berends BR, Urlings HA, Snijders JM, van Knapen F. 2001. Epidemiological investigations into the sources of Salmonella contamination of pork. Berl. Munch. Tierarztl. Wochenschr. 114:356–359 [PubMed] [Google Scholar]
  • 60. Usera MA, et al. 2002. Antibiotic resistance of Salmonella spp. from animal sources in Spain in 1996 and 2000. J. Food Prot. 65:768–773 [DOI] [PubMed] [Google Scholar]
  • 61. Varma JK, et al. 2005. Hospitalization and antimicrobial resistance in Salmonella outbreaks, 1984–2002. Emerg. Infect. Dis. 11:943–946 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 62. Varma JK, et al. 2006. Highly resistant Salmonella Newport-MDRAmpC transmitted through the domestic US food supply: a FoodNet case-control study of sporadic Salmonella Newport infections, 2002–2003. J. Infect. Dis. 194:222–230 [DOI] [PubMed] [Google Scholar]
  • 63. Vugia DJ, et al. 2004. Invasive Salmonella infections in the United States, FoodNet, 1996–1999: incidence, serotype distribution, and outcome. Clin. Infect. Dis. 38(Suppl. 3):S149–S156 [DOI] [PubMed] [Google Scholar]
  • 64. Winokur PL, et al. 2000. Animal and human multidrug-resistant, cephalosporin-resistant Salmonella isolates expressing a plasmid-mediated CMY-2 AmpC beta-lactamase. Antimicrob. Agents Chemother. 44:2777–2783 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 65. Zaidi MB, et al. 2007. Rapid and widespread dissemination of multidrug-resistant blaCMY-2 Salmonella Typhimurium in Mexico. J. Antimicrob. Chemother. 60:398–401 [DOI] [PubMed] [Google Scholar]
  • 66. Zhao S, et al. 2006. Antimicrobial resistance and genetic relatedness among Salmonella from retail foods of animal origin: NARMS retail meat surveillance. Foodborne Pathog. Dis. 3:106–117 [DOI] [PubMed] [Google Scholar]

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