Abstract
Previous work to elucidate the mechanism of crosslink repair by (A)BC excinuclease has shown that a psoralen-crosslinked duplex is selectively incised in the furan-side strand, while a three-stranded structure is incised in the pyrone-side strand of the crosslink. These observations support a sequential incision and recombination model for the complete error-free repair of a psoralen crosslink. The work presented here extends these findings by demonstrating that in the presence of RecA protein and a homologous DNA oligonucleotide, (A)BC excinuclease is induced to incise the pyrone-side strand of a crosslinked double-stranded plasmid molecule. This finding adds further support to the current model for error-free crosslink repair.
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- Abbotts J., SenGupta D. N., Zon G., Wilson S. H. Studies on the mechanism of Escherichia coli DNA polymerase I large fragment. Effect of template sequence and substrate variation on termination of synthesis. J Biol Chem. 1988 Oct 15;263(29):15094–15103. [PubMed] [Google Scholar]
- Cheng S., Van Houten B., Gamper H. B., Sancar A., Hearst J. E. Use of psoralen-modified oligonucleotides to trap three-stranded RecA-DNA complexes and repair of these cross-linked complexes by ABC excinuclease. J Biol Chem. 1988 Oct 15;263(29):15110–15117. [PubMed] [Google Scholar]
- Cole R. S., Levitan D., Sinden R. R. Removal of psoralen interstrand cross-links from DNA of Escherichia coli: mechanism and genetic control. J Mol Biol. 1976 May 5;103(1):39–59. doi: 10.1016/0022-2836(76)90051-6. [DOI] [PubMed] [Google Scholar]
- Cole R. S. Repair of DNA containing interstrand crosslinks in Escherichia coli: sequential excision and recombination. Proc Natl Acad Sci U S A. 1973 Apr;70(4):1064–1068. doi: 10.1073/pnas.70.4.1064. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Jones B. K., Yeung A. T. DNA base composition determines the specificity of UvrABC endonuclease incision of a psoralen cross-link. J Biol Chem. 1990 Feb 25;265(6):3489–3496. [PubMed] [Google Scholar]
- Kodadek T., Gamper H. Efficient synthesis of a supercoiled M13 DNA molecule containing a site specifically placed psoralen adduct and its use as a substrate for DNA replication. Biochemistry. 1988 May 3;27(9):3210–3215. doi: 10.1021/bi00409a013. [DOI] [PubMed] [Google Scholar]
- Koffel-Schwartz N., Maenhaut-Michel G., Fuchs R. P. Specific strand loss in N-2-acetylaminofluorene-modified DNA. J Mol Biol. 1987 Feb 20;193(4):651–659. doi: 10.1016/0022-2836(87)90348-2. [DOI] [PubMed] [Google Scholar]
- Myles G. M., Sancar A. DNA repair. Chem Res Toxicol. 1989 Jul-Aug;2(4):197–226. doi: 10.1021/tx00010a001. [DOI] [PubMed] [Google Scholar]
- Orren D. K., Sancar A. The (A)BC excinuclease of Escherichia coli has only the UvrB and UvrC subunits in the incision complex. Proc Natl Acad Sci U S A. 1989 Jul;86(14):5237–5241. doi: 10.1073/pnas.86.14.5237. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Piette J., Gamper H. B., van de Vorst A., Hearst J. E. Mutagenesis induced by site specifically placed 4'-hydroxymethyl-4,5',8-trimethylpsoralen adducts. Nucleic Acids Res. 1988 Nov 11;16(21):9961–9977. doi: 10.1093/nar/16.21.9961. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Pu W. T., Kahn R., Munn M. M., Rupp W. D. UvrABC incision of N-methylmitomycin A-DNA monoadducts and cross-links. J Biol Chem. 1989 Dec 5;264(34):20697–20704. [PubMed] [Google Scholar]
- Sancar A., Sancar G. B. DNA repair enzymes. Annu Rev Biochem. 1988;57:29–67. doi: 10.1146/annurev.bi.57.070188.000333. [DOI] [PubMed] [Google Scholar]
- Sancar A., Smith F. W., Sancar G. B. Purification of Escherichia coli DNA photolyase. J Biol Chem. 1984 May 10;259(9):6028–6032. [PubMed] [Google Scholar]
- Sladek F. M., Munn M. M., Rupp W. D., Howard-Flanders P. In vitro repair of psoralen-DNA cross-links by RecA, UvrABC, and the 5'-exonuclease of DNA polymerase I. J Biol Chem. 1989 Apr 25;264(12):6755–6765. [PubMed] [Google Scholar]
- Thomas D. C., Levy M., Sancar A. Amplification and purification of UvrA, UvrB, and UvrC proteins of Escherichia coli. J Biol Chem. 1985 Aug 15;260(17):9875–9883. [PubMed] [Google Scholar]
- Tomic M. T., Wemmer D. E., Kim S. H. Structure of a psoralen cross-linked DNA in solution by nuclear magnetic resonance. Science. 1987 Dec 18;238(4834):1722–1725. doi: 10.1126/science.3686011. [DOI] [PubMed] [Google Scholar]
- Van Houten B., Gamper H., Hearst J. E., Sancar A. Analysis of sequential steps of nucleotide excision repair in Escherichia coli using synthetic substrates containing single psoralen adducts. J Biol Chem. 1988 Nov 15;263(32):16553–16560. [PubMed] [Google Scholar]
- Van Houten B., Gamper H., Hearst J. E., Sancar A. Construction of DNA substrates modified with psoralen at a unique site and study of the action mechanism of ABC excinuclease on these uniformly modified substrates. J Biol Chem. 1986 Oct 25;261(30):14135–14141. [PubMed] [Google Scholar]
- Van Houten B., Gamper H., Holbrook S. R., Hearst J. E., Sancar A. Action mechanism of ABC excision nuclease on a DNA substrate containing a psoralen crosslink at a defined position. Proc Natl Acad Sci U S A. 1986 Nov;83(21):8077–8081. doi: 10.1073/pnas.83.21.8077. [DOI] [PMC free article] [PubMed] [Google Scholar]
- West S. C., Cassuto E., Howard-Flanders P. Postreplication repair in E. coli: strand exchange reactions of gapped DNA by RecA protein. Mol Gen Genet. 1982;187(2):209–217. doi: 10.1007/BF00331119. [DOI] [PubMed] [Google Scholar]


