Abstract
We report here the isolation of a mutant tRNAPhe that suppresses a double missense auxotrophic mutation in trpA of Escherichia coli, trpA218. The doubly mutant protein product differs from wild-type TrpA by the replacements of Phe22 by Leu and Gly211 by Ser. A partial revertant TrpA phenotype can be obtained from trpA218 by changing either Leu22 back to Phe or Ser211 back to Gly. Translational suppressors were previously obtained that act at codon 211, replacing the Ser211 in the TrpA218 protein, presumably with Gly. In the present study, we selected for trpA218 suppressors caused by mutation of a cloned tRNAPhe gene, pheV. DNA sequence analysis of the suppressor isolated reveals a singular structural alteration, changing the anticodon from 5'-GAA-3' to 5'-GAG-3'. Sequencing of trpA218 confirmed the likely identity of Leu22 as CUC. The new missense suppressor, designated pheV(SuCUC), is lethal to the cell when highly expressed, as from a high copy number plasmid. This may be due to efficient replacement of Leu by Phe at CUC (and, probably, CUU) codons throughout the genome. We anticipate that pheV(SuCUC) will prove, like other missense suppressors, to be extremely useful in studies on the specificity and accuracy of decoding.
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Selected References
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- Caillet J., Plumbridge J. A., Springer M., Vacher J., Delamarche C., Buckingham R. H., Grunberg-Manago M. Identification of clones carrying an E. coli tRNAPhe gene by suppression of phenylalanyl-tRNA synthetase thermosensitive mutants. Nucleic Acids Res. 1983 Feb 11;11(3):727–736. doi: 10.1093/nar/11.3.727. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Eggertsson G., Adelberg E. A. Map positions and specificities of suppressor mutations in Escherichia coli K-12. Genetics. 1965 Aug;52(2):319–340. doi: 10.1093/genetics/52.2.319. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Eggertsson G. Suppressors causing temperature sensitivity of growth in Escherichia coli. Genetics. 1968 Oct;60(2):269–280. doi: 10.1093/genetics/60.2.269. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Fowler R. G., Schaaper R. M., Glickman B. W. Characterization of mutational specificity within the lacI gene for a mutD5 mutator strain of Escherichia coli defective in 3'----5' exonuclease (proofreading) activity. J Bacteriol. 1986 Jul;167(1):130–137. doi: 10.1128/jb.167.1.130-137.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Gyllensten U. B., Erlich H. A. Generation of single-stranded DNA by the polymerase chain reaction and its application to direct sequencing of the HLA-DQA locus. Proc Natl Acad Sci U S A. 1988 Oct;85(20):7652–7656. doi: 10.1073/pnas.85.20.7652. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hanahan D. Studies on transformation of Escherichia coli with plasmids. J Mol Biol. 1983 Jun 5;166(4):557–580. doi: 10.1016/s0022-2836(83)80284-8. [DOI] [PubMed] [Google Scholar]
- Hou Y. M., Schimmel P. A simple structural feature is a major determinant of the identity of a transfer RNA. Nature. 1988 May 12;333(6169):140–145. doi: 10.1038/333140a0. [DOI] [PubMed] [Google Scholar]
- Komine Y., Adachi T., Inokuchi H., Ozeki H. Genomic organization and physical mapping of the transfer RNA genes in Escherichia coli K12. J Mol Biol. 1990 Apr 20;212(4):579–598. doi: 10.1016/0022-2836(90)90224-A. [DOI] [PubMed] [Google Scholar]
- Lopilato J., Bortner S., Beckwith J. Mutations in a new chromosomal gene of Escherichia coli K-12, pcnB, reduce plasmid copy number of pBR322 and its derivatives. Mol Gen Genet. 1986 Nov;205(2):285–290. doi: 10.1007/BF00430440. [DOI] [PubMed] [Google Scholar]
- McClain W. H., Foss K. Changing the identity of a tRNA by introducing a G-U wobble pair near the 3' acceptor end. Science. 1988 May 6;240(4853):793–796. doi: 10.1126/science.2452483. [DOI] [PubMed] [Google Scholar]
- Murgola E. J., Childress J. R. Suppressors of a UGG missense mutation in Escherichia coli. J Bacteriol. 1980 Jul;143(1):285–292. doi: 10.1128/jb.143.1.285-292.1980. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Murgola E. J., Mims B. H., Prather N. E. Characterization of missense suppressors of a double mutant of the tryptophan synthetase alpha chain of Escherichia coli. Mol Gen Genet. 1978 Oct 4;165(2):225–230. doi: 10.1007/BF00269911. [DOI] [PubMed] [Google Scholar]
- Murgola E. J., Pagel F. T. Suppressors of lysine codons may be misacylated lysine tRNAs. J Bacteriol. 1983 Nov;156(2):917–919. doi: 10.1128/jb.156.2.917-919.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Murgola E. J., Yanofsky C. Selection for new amino acids at position 211 of the tryptophan synthetase alpha chain of Escherichia coli. J Mol Biol. 1974 Jul 15;86(4):775–784. doi: 10.1016/0022-2836(74)90353-2. [DOI] [PubMed] [Google Scholar]
- Murgola E. J. tRNA, suppression, and the code. Annu Rev Genet. 1985;19:57–80. doi: 10.1146/annurev.ge.19.120185.000421. [DOI] [PubMed] [Google Scholar]
- Pittard J., Praszkier J., Certoma A., Eggertsson G., Gowrishankar J., Narasaiah G., Whipp M. J. Evidence that there are only two tRNA(Phe) genes in Escherichia coli. J Bacteriol. 1990 Oct;172(10):6077–6083. doi: 10.1128/jb.172.10.6077-6083.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Prather N. E., Murgola E. J., Mims B. H. Nucleotide substitution in the amino acid acceptor stem of lysine transfer RNA causes missense suppression. J Mol Biol. 1984 Jan 15;172(2):177–184. doi: 10.1016/s0022-2836(84)80036-4. [DOI] [PubMed] [Google Scholar]
- Thorbjarnardóttir S., Uemura H., Dingermann T., Rafnar T., Thorsteinsdóttir S., Söll D., Eggertsson G. Escherichia coli supH suppressor: temperature-sensitive missense suppression caused by an anticodon change in tRNASer2. J Bacteriol. 1985 Jan;161(1):207–211. doi: 10.1128/jb.161.1.207-211.1985. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Tucker S. D., Murgola E. J., Pagel F. T. Missense and nonsense suppressors can correct frameshift mutations. Biochimie. 1989 Jun;71(6):729–739. doi: 10.1016/0300-9084(89)90089-8. [DOI] [PubMed] [Google Scholar]
- VOGEL H. J., BONNER D. M. Acetylornithinase of Escherichia coli: partial purification and some properties. J Biol Chem. 1956 Jan;218(1):97–106. [PubMed] [Google Scholar]
