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. 1992 Oct 25;20(20):5351–5356. doi: 10.1093/nar/20.20.5351

Characterization of Chlorella virus PBCV-1 CviAII restriction and modification system.

Y Zhang 1, M Nelson 1, J W Nietfeldt 1, D E Burbank 1, J L Van Etten 1
PMCID: PMC334341  PMID: 1437552

Abstract

A second DNA site-specific (restriction) endonuclease (R.CviAII) and its cognate adenine DNA methyltransferase (M.CviAII) were isolated from virus PBCV-1 infected Chlorella strain NC64A cells. R.CviAII, a heteroschizomer of the bacterial restriction endonuclease NlaIII, recognizes the sequence CATG, and does not cleave CmATG sequences. However, unlike NlaIII, which cleaves after the G and does not cleave either CmATG or mCATG sequences, CviAII cleaves between the C and A and is unaffected by mCATG methylation. The M.CviAII and R.CviAII genes were cloned and their DNA sequences were determined. These genes are tandemly arranged head-to-tail such that the TAA termination codon of the M.CviAII methyltransferase gene overlaps the ATG translational start site of R.CviAII endonuclease. R.CviAII is the first chlorella virus site-specific endonuclease gene to be cloned and sequenced.

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  1. Dayhoff M. O., Barker W. C., Hunt L. T. Establishing homologies in protein sequences. Methods Enzymol. 1983;91:524–545. doi: 10.1016/s0076-6879(83)91049-2. [DOI] [PubMed] [Google Scholar]
  2. Kita K., Kotani H., Sugisaki H., Takanami M. The fokI restriction-modification system. I. Organization and nucleotide sequences of the restriction and modification genes. J Biol Chem. 1989 Apr 5;264(10):5751–5756. [PubMed] [Google Scholar]
  3. Klimasauskas S., Timinskas A., Menkevicius S., Butkienè D., Butkus V., Janulaitis A. Sequence motifs characteristic of DNA[cytosine-N4]methyltransferases: similarity to adenine and cytosine-C5 DNA-methylases. Nucleic Acids Res. 1989 Dec 11;17(23):9823–9832. doi: 10.1093/nar/17.23.9823. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Kuo T. T., Huang T. C., Teng M. H. 5-Methylcytosine replacing cytosine in the deoxyribonucleic acid of a bacteriophage for Xanthomonas oryzae. J Mol Biol. 1968 Jul 14;34(2):373–375. doi: 10.1016/0022-2836(68)90263-5. [DOI] [PubMed] [Google Scholar]
  5. Labbé D., Höltke H. J., Lau P. C. Cloning and characterization of two tandemly arranged DNA methyltransferase genes of Neisseria lactamica: an adenine-specific M.NlaIII and a cytosine-type methylase. Mol Gen Genet. 1990 Oct;224(1):101–110. doi: 10.1007/BF00259456. [DOI] [PubMed] [Google Scholar]
  6. Landry D., Looney M. C., Feehery G. R., Slatko B. E., Jack W. E., Schildkraut I., Wilson G. G. M.FokI methylates adenine in both strands of its asymmetric recognition sequence. Gene. 1989 Apr 15;77(1):1–10. doi: 10.1016/0378-1119(89)90353-3. [DOI] [PubMed] [Google Scholar]
  7. McClelland M., Nelson M. Effect of site-specific methylation on DNA modification methyltransferases and restriction endonucleases. Nucleic Acids Res. 1992 May 11;20 (Suppl):2145–2157. doi: 10.1093/nar/20.suppl.2145. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Needleman S. B., Wunsch C. D. A general method applicable to the search for similarities in the amino acid sequence of two proteins. J Mol Biol. 1970 Mar;48(3):443–453. doi: 10.1016/0022-2836(70)90057-4. [DOI] [PubMed] [Google Scholar]
  9. Nelson M., McClelland M. Purification and assay of type II DNA methylases. Methods Enzymol. 1987;155:32–41. doi: 10.1016/0076-6879(87)55007-8. [DOI] [PubMed] [Google Scholar]
  10. Qiang B. Q., Schildkraut I. Two unique restriction endonucleases from Neisseria lactamica. Nucleic Acids Res. 1986 Mar 11;14(5):1991–1999. doi: 10.1093/nar/14.5.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Rohozinski J., Girton L. E., Van Etten J. L. Chlorella viruses contain linear nonpermuted double-stranded DNA genomes with covalently closed hairpin ends. Virology. 1989 Feb;168(2):363–369. doi: 10.1016/0042-6822(89)90277-8. [DOI] [PubMed] [Google Scholar]
  12. Rosenberg M., Court D. Regulatory sequences involved in the promotion and termination of RNA transcription. Annu Rev Genet. 1979;13:319–353. doi: 10.1146/annurev.ge.13.120179.001535. [DOI] [PubMed] [Google Scholar]
  13. Ross P. M., Woodley K., Baird M. Quantitative autoradiography of dot blots using a microwell densitometer. Biotechniques. 1989 Jul-Aug;7(7):680–688. [PubMed] [Google Scholar]
  14. Schuster A. M., Graves M., Korth K., Ziegelbein M., Brumbaugh J., Grone D., Meints R. H. Transcription and sequence studies of a 4.3-kbp fragment from a ds-DNA eukaryotic algal virus. Virology. 1990 Jun;176(2):515–523. doi: 10.1016/0042-6822(90)90021-i. [DOI] [PubMed] [Google Scholar]
  15. Sugisaki H., Kita K., Takanami M. The FokI restriction-modification system. II. Presence of two domains in FokI methylase responsible for modification of different DNA strands. J Biol Chem. 1989 Apr 5;264(10):5757–5761. [PubMed] [Google Scholar]
  16. Tabor S., Richardson C. C. DNA sequence analysis with a modified bacteriophage T7 DNA polymerase. Proc Natl Acad Sci U S A. 1987 Jul;84(14):4767–4771. doi: 10.1073/pnas.84.14.4767. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Van Etten J. L., Lane L. C., Meints R. H. Viruses and viruslike particles of eukaryotic algae. Microbiol Rev. 1991 Dec;55(4):586–620. doi: 10.1128/mr.55.4.586-620.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Van Etten J. L., Schuster A. M., Girton L., Burbank D. E., Swinton D., Hattman S. DNA methylation of viruses infecting a eukaryotic Chlorella-like green alga. Nucleic Acids Res. 1985 May 24;13(10):3471–3478. doi: 10.1093/nar/13.10.3471. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Warren R. A. Modified bases in bacteriophage DNAs. Annu Rev Microbiol. 1980;34:137–158. doi: 10.1146/annurev.mi.34.100180.001033. [DOI] [PubMed] [Google Scholar]
  20. Wilson G. G., Murray N. E. Restriction and modification systems. Annu Rev Genet. 1991;25:585–627. doi: 10.1146/annurev.ge.25.120191.003101. [DOI] [PubMed] [Google Scholar]
  21. Xia Y. N., Burbank D. E., Uher L., Rabussay D., Van Etten J. L. Restriction endonuclease activity induced by PBCV-1 virus infection of a Chlorella-like green alga. Mol Cell Biol. 1986 May;6(5):1430–1439. doi: 10.1128/mcb.6.5.1430. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Xia Y. N., Van Etten J. L. DNA methyltransferase induced by PBCV-1 virus infection of a Chlorella-like green alga. Mol Cell Biol. 1986 May;6(5):1440–1445. doi: 10.1128/mcb.6.5.1440. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Zhang Y., Nelson M., Van Etten J. L. A single amino acid change restores DNA cytosine methyltransferase activity in a cloned chlorella virus pseudogene. Nucleic Acids Res. 1992 Apr 11;20(7):1637–1642. doi: 10.1093/nar/20.7.1637. [DOI] [PMC free article] [PubMed] [Google Scholar]

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