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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Mar 3;68(Pt 4):m373–m374. doi: 10.1107/S1600536812008902

Diaqua­bis­(5-carb­oxy-2-ethyl-1H-imidazole-4-carboxyl­ato-κ2 N 3,O 4)cobalt(II) trihydrate

Dong-Liang Miao a, Shi-Jie Li b, Wen-Dong Song c,*, Shao-Wei Tong a, Seik Weng Ng d,e
PMCID: PMC3343793  PMID: 22589767

Abstract

In the title compound, [Co(C7H7N2O4)2(H2O)2]·3H2O, the CoII cation, located on an inversion center, is N,O-chelated by two 5-carboxy-2-ethyl-1H-imidazole-4-carboxylate anions and further coordinated by two water mol­ecules in a distorted octa­hedral geometry. Only one carboxy group of the anion is deprotonated, and the two carboxyl groups of the same anion are linked via an intra­molecular O—H⋯O hydrogen bond. One of the lattice water mol­ecules is located on an inversion center, its H atom equally disordered over two positions. One of H atoms of another lattice water mol­ecules is also equally disordered over two sites. Water H atoms and the amino H atom all are involved in an inter­molecular hydrogen-bonded network in the crystal.

Related literature  

For related metal complexes with imidazole-4,5-dicarboxyl­ate ligands, see: Fan et al. (2010); Li et al. (2011); Yan et al. (2010); Song et al. (2010); He et al. (2010).graphic file with name e-68-0m373-scheme1.jpg

Experimental  

Crystal data  

  • [Co(C7H7N2O4)2(H2O)2]·3H2O

  • M r = 515.30

  • Triclinic, Inline graphic

  • a = 7.1615 (14) Å

  • b = 8.8729 (18) Å

  • c = 9.3815 (19) Å

  • α = 66.06 (3)°

  • β = 88.66 (3)°

  • γ = 70.97 (3)°

  • V = 511.0 (3) Å3

  • Z = 1

  • Mo Kα radiation

  • μ = 0.92 mm−1

  • T = 293 K

  • 0.20 × 0.18 × 0.15 mm

Data collection  

  • Bruker SMART APEXII diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2001) T min = 0.781, T max = 0.781

  • 5086 measured reflections

  • 2319 independent reflections

  • 1578 reflections with I > 2σ(I)

  • R int = 0.029

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.035

  • wR(F 2) = 0.102

  • S = 1.01

  • 2319 reflections

  • 149 parameters

  • 5 restraints

  • H-atom parameters constrained

  • Δρmax = 0.59 e Å−3

  • Δρmin = −0.73 e Å−3

Data collection: APEX2 (Bruker, 2007); cell refinement: SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812008902/xu5468sup1.cif

e-68-0m373-sup1.cif (18.2KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812008902/xu5468Isup2.hkl

e-68-0m373-Isup2.hkl (113.9KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Selected bond lengths (Å).

Co1—O1 2.153 (2)
Co1—O1W 2.064 (2)
Co1—N2 2.123 (2)

Table 2. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1⋯O2Wi 0.86 1.96 2.786 (4) 160
O3—H3⋯O2 0.85 1.63 2.471 (3) 171
O1W—H1W⋯O4ii 0.85 1.86 2.708 (3) 173
O1W—H2W⋯O3iii 0.85 1.94 2.763 (3) 161
O2W—H3W⋯O1 0.85 2.33 3.077 (4) 147
O2W—H3W⋯O3W 0.85 2.44 3.091 (3) 134
O2W—H4W⋯O2Wiv 0.85 2.04 2.883 (6) 172
O2W—H7W⋯O4v 0.85 2.35 3.120 (4) 151
O3W—H5W⋯O2vi 0.85 2.37 3.040 (2) 136
O3W—H6W⋯O1 0.85 2.26 3.031 (2) 151
O3W—H6W⋯O2 0.85 2.43 3.040 (2) 129

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic; (v) Inline graphic; (vi) Inline graphic.

Acknowledgments

The work was supported by the Nonprofit Industry Foundation of the National Ocean Administration of China (grant No. 2000905021), the Guangdong Chinese Academy of Science Comprehensive Strategic Cooperation Project (grant No. 2009B091300121) and Guangdong Natural Science Fundation (No. 9252408801000002).

supplementary crystallographic information

Comment

Crystal engineering of mental-organic complexes is a very active research field. It is well known that organic ligands play a crucial role in the design and construction of desirable frameworks. In recent years, multifunctional ligands containing N– and O-donors have attracted great attention due to the fact that they may induce diversity in the coordination modes and interesting properties. In our previous work, we have done a lot of research on the design and synthesis of new compounds built from the imidazole derivatives (Fan et al., 2010; Li et al., 2011; He et al., 2010; Song et al., 2010; Yan et al., 2010). To continue our study, we report here the structure of the title Co(II) complex.

As illustrated in Fig. 1, The CoII ion adopts a slightly distorted octahedral geometry, with two N,O-bidentate ligands ([Co—O = 2.155 (3) Å and Co—N = 2.128 (2) Å) from the imidazoledicarboxylic group at the equatorial positions, the other two oxygen atoms (Co—O = 2.060 (2) Å) from two water molecules occupied the axial position. In the crystal structure, the complex molecules and solvent molecules are linked by O—H···O and N—H···O hydrogen bonds, forming the final three-dimensional supra-molecular network. A lattice water molecule is located on an inversion center, and one H atom of another water molecule was split into two positions with half occupancy.

Experimental

A mixture of Co(NO3)2.6H2O (0.25 mmol, 0.07 g) and 2-ethyl-1H-imidazole-4,5-dicarboxylic acid (0.5 mmol, 0.09 g) in 10 ml of water solution was sealed in an autoclave equipped with a Teflon liner (25 ml) and then heated at 393 K for 2 d. Red crystals were obtained by slow evaporation of the solvent at room temperature with the yeild of 32% based on Co.

Refinement

H atoms of the water molecule were located in a difference Fourier map and refined as riding with an O—H distance restraint of 0.82 (1) Å, with Uiso(H) = 1.5Ueq(O). The H···H distances within the water molecules were restraint to 1.30 (1) Å. Carboxyl H atoms were located in a difference map but were refined as riding on the parent O atoms with O—H = 0.82 Å and Uiso(H) = 1.5 Ueq(O). Carbon and nitrogen bound H atoms were placed at calculated positions and were treated as riding on the parent C or N atoms with C—H = 0.96 (methyl), 0.97 (methylene) and N—H = 0.86 Å, Uiso(H) = 1.2 or 1.5Ueq(C,N). The O3w is located on an inversion center, its H atoms were equally disordered over two positions. One of H atoms of O2w water molecules is also equally disordered over two sites.

Figures

Fig. 1.

Fig. 1.

The structure of the title compound, showing the atomic numbering scheme. Non-H atoms are shown with 30% probability displacement ellipsoids. (symmetry codes: i = 1-x, -y, 1-z).

Crystal data

[Co(C7H7N2O4)2(H2O)2]·3H2O Z = 1
Mr = 515.30 F(000) = 267
Triclinic, P1 Dx = 1.675 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 7.1615 (14) Å Cell parameters from 7174 reflections
b = 8.8729 (18) Å θ = 2.4–28.4°
c = 9.3815 (19) Å µ = 0.92 mm1
α = 66.06 (3)° T = 293 K
β = 88.66 (3)° Block, red
γ = 70.97 (3)° 0.20 × 0.18 × 0.15 mm
V = 511.0 (3) Å3

Data collection

Bruker SMART APEXII diffractometer 2319 independent reflections
Radiation source: fine-focus sealed tube 1578 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.029
ω scans θmax = 27.5°, θmin = 3.0°
Absorption correction: multi-scan (SADABS; Bruker, 2001) h = −8→9
Tmin = 0.781, Tmax = 0.781 k = −11→11
5086 measured reflections l = −12→12

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.102 H-atom parameters constrained
S = 1.01 w = 1/[σ2(Fo2) + (0.020P)2 + 1.1P] where P = (Fo2 + 2Fc2)/3
2319 reflections (Δ/σ)max < 0.001
149 parameters Δρmax = 0.59 e Å3
5 restraints Δρmin = −0.73 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq Occ. (<1)
Co1 0.5000 0.0000 0.5000 0.02833 (18)
N1 0.2254 (4) 0.2967 (3) 0.7643 (3) 0.0306 (6)
H1 0.1776 0.3183 0.8417 0.037*
N2 0.3637 (4) 0.1497 (3) 0.6265 (3) 0.0265 (5)
O1 0.4459 (3) 0.2642 (3) 0.3267 (3) 0.0350 (5)
O2 0.3296 (4) 0.5449 (3) 0.2860 (3) 0.0446 (6)
O3 0.1803 (4) 0.7116 (3) 0.4415 (3) 0.0431 (6)
H3 0.2224 0.6487 0.3911 0.065*
O4 0.0657 (4) 0.6633 (3) 0.6723 (3) 0.0439 (6)
O1W 0.7752 (3) −0.0183 (3) 0.5820 (3) 0.0461 (7)
H1W 0.8718 −0.1140 0.6044 0.069*
H2W 0.8118 0.0689 0.5646 0.069*
C1 0.3196 (4) 0.3266 (4) 0.5348 (4) 0.0264 (6)
C2 0.2335 (4) 0.4198 (4) 0.6198 (4) 0.0276 (6)
C3 0.3052 (4) 0.1352 (4) 0.7653 (4) 0.0287 (7)
C4 0.3683 (5) 0.3806 (4) 0.3732 (4) 0.0304 (7)
C5 0.1529 (5) 0.6106 (4) 0.5789 (4) 0.0322 (7)
C6 0.3153 (5) −0.0299 (4) 0.9003 (4) 0.0359 (7)
H6A 0.2973 −0.0090 0.9943 0.043*
H6B 0.4462 −0.1174 0.9166 0.043*
C7 0.1579 (7) −0.1010 (6) 0.8754 (5) 0.0565 (11)
H7A 0.0285 −0.0125 0.8537 0.085*
H7B 0.1633 −0.2030 0.9686 0.085*
H7C 0.1827 −0.1323 0.7883 0.085*
O2W 0.1678 (5) 0.3395 (5) 0.0422 (4) 0.0726 (10)
H3W 0.2620 0.3480 0.0885 0.109*
H4W 0.0694 0.4355 0.0084 0.109* 0.50
H7W 0.0730 0.3366 0.0983 0.109* 0.50
O3W 0.5000 0.5000 0.0000 0.282 (8)
H5W 0.5935 0.4424 −0.0352 0.423* 0.50
H6W 0.5155 0.4487 0.0998 0.423* 0.50

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Co1 0.0327 (3) 0.0212 (3) 0.0335 (4) −0.0056 (2) 0.0051 (3) −0.0167 (3)
N1 0.0328 (14) 0.0297 (14) 0.0347 (15) −0.0067 (11) 0.0064 (12) −0.0222 (12)
N2 0.0278 (12) 0.0202 (12) 0.0323 (14) −0.0048 (10) 0.0029 (11) −0.0143 (11)
O1 0.0459 (13) 0.0260 (12) 0.0322 (12) −0.0083 (10) 0.0097 (11) −0.0149 (10)
O2 0.0673 (17) 0.0246 (12) 0.0383 (14) −0.0143 (12) 0.0134 (13) −0.0113 (11)
O3 0.0565 (15) 0.0228 (12) 0.0521 (16) −0.0100 (11) 0.0074 (13) −0.0207 (12)
O4 0.0479 (14) 0.0309 (13) 0.0554 (16) −0.0031 (11) 0.0060 (12) −0.0289 (12)
O1W 0.0354 (13) 0.0282 (13) 0.081 (2) −0.0065 (10) −0.0024 (13) −0.0316 (13)
C1 0.0268 (14) 0.0211 (14) 0.0332 (16) −0.0069 (12) 0.0025 (13) −0.0144 (13)
C2 0.0261 (14) 0.0222 (15) 0.0346 (17) −0.0057 (12) 0.0007 (13) −0.0141 (13)
C3 0.0279 (15) 0.0267 (16) 0.0335 (17) −0.0065 (12) 0.0017 (14) −0.0168 (14)
C4 0.0305 (16) 0.0252 (16) 0.0348 (17) −0.0075 (13) 0.0022 (14) −0.0136 (14)
C5 0.0310 (16) 0.0248 (17) 0.0439 (19) −0.0053 (13) −0.0010 (15) −0.0207 (16)
C6 0.0412 (18) 0.0315 (17) 0.0328 (17) −0.0113 (15) 0.0043 (15) −0.0125 (15)
C7 0.071 (3) 0.052 (3) 0.051 (2) −0.034 (2) 0.006 (2) −0.017 (2)
O2W 0.0621 (19) 0.105 (3) 0.060 (2) −0.0130 (18) 0.0094 (16) −0.057 (2)
O3W 0.408 (19) 0.198 (11) 0.139 (9) −0.010 (11) 0.100 (11) −0.052 (8)

Geometric parameters (Å, º)

Co1—O1 2.153 (2) O1W—H2W 0.8499
Co1—O1i 2.153 (2) C1—C2 1.371 (4)
Co1—O1Wi 2.064 (2) C1—C4 1.464 (4)
Co1—O1W 2.064 (2) C2—C5 1.481 (4)
Co1—N2 2.123 (2) C3—C6 1.478 (4)
Co1—N2i 2.123 (2) C6—C7 1.523 (5)
N1—C3 1.355 (4) C6—H6A 0.9700
N1—C2 1.367 (4) C6—H6B 0.9700
N1—H1 0.8600 C7—H7A 0.9600
N2—C3 1.327 (4) C7—H7B 0.9600
N2—C1 1.377 (4) C7—H7C 0.9600
O1—C4 1.244 (3) O2W—H3W 0.8500
O2—C4 1.284 (4) O2W—H4W 0.8500
O3—C5 1.292 (4) O2W—H7W 0.8500
O3—H3 0.8500 O3W—H5W 0.8500
O4—C5 1.222 (4) O3W—H6W 0.8500
O1W—H1W 0.8500
O1Wi—Co1—O1W 180.0 N1—C2—C1 105.4 (3)
O1Wi—Co1—N2 90.68 (9) N1—C2—C5 122.2 (3)
O1W—Co1—N2 89.32 (9) C1—C2—C5 132.4 (3)
O1Wi—Co1—N2i 89.32 (9) N2—C3—N1 109.9 (3)
O1W—Co1—N2i 90.68 (9) N2—C3—C6 126.0 (3)
N2—Co1—N2i 180.00 (9) N1—C3—C6 124.1 (3)
O1Wi—Co1—O1 88.57 (10) O1—C4—O2 122.9 (3)
O1W—Co1—O1 91.43 (10) O1—C4—C1 118.1 (3)
N2—Co1—O1 78.28 (9) O2—C4—C1 119.0 (3)
N2i—Co1—O1 101.72 (9) O4—C5—O3 124.3 (3)
O1Wi—Co1—O1i 91.43 (10) O4—C5—C2 120.1 (3)
O1W—Co1—O1i 88.57 (10) O3—C5—C2 115.7 (3)
N2—Co1—O1i 101.72 (9) C3—C6—C7 112.2 (3)
N2i—Co1—O1i 78.28 (9) C3—C6—H6A 109.2
O1—Co1—O1i 180.0 C7—C6—H6A 109.2
C3—N1—C2 108.7 (3) C3—C6—H6B 109.2
C3—N1—H1 125.6 C7—C6—H6B 109.2
C2—N1—H1 125.6 H6A—C6—H6B 107.9
C3—N2—C1 106.5 (2) C6—C7—H7A 109.5
C3—N2—Co1 142.7 (2) C6—C7—H7B 109.5
C1—N2—Co1 110.81 (19) H7A—C7—H7B 109.5
C4—O1—Co1 114.8 (2) C6—C7—H7C 109.5
C5—O3—H3 107.5 H7A—C7—H7C 109.5
Co1—O1W—H1W 118.0 H7B—C7—H7C 109.5
Co1—O1W—H2W 124.7 H3W—O2W—H4W 110.3
H1W—O1W—H2W 113.4 H3W—O2W—H7W 109.4
C2—C1—N2 109.5 (3) H4W—O2W—H7W 66.5
C2—C1—C4 132.4 (3) H5W—O3W—H6W 109.4
N2—C1—C4 118.0 (2)
O1Wi—Co1—N2—C3 91.3 (4) C4—C1—C2—N1 179.5 (3)
O1W—Co1—N2—C3 −88.7 (4) N2—C1—C2—C5 −178.0 (3)
N2i—Co1—N2—C3 −95 (100) C4—C1—C2—C5 1.8 (6)
O1—Co1—N2—C3 179.7 (4) C1—N2—C3—N1 0.1 (3)
O1i—Co1—N2—C3 −0.3 (4) Co1—N2—C3—N1 179.4 (2)
O1Wi—Co1—N2—C1 −89.5 (2) C1—N2—C3—C6 177.5 (3)
O1W—Co1—N2—C1 90.5 (2) Co1—N2—C3—C6 −3.2 (6)
N2i—Co1—N2—C1 84 (100) C2—N1—C3—N2 −0.3 (3)
O1—Co1—N2—C1 −1.06 (19) C2—N1—C3—C6 −177.7 (3)
O1i—Co1—N2—C1 178.94 (19) Co1—O1—C4—O2 178.6 (2)
O1Wi—Co1—O1—C4 92.4 (2) Co1—O1—C4—C1 −1.4 (4)
O1W—Co1—O1—C4 −87.6 (2) C2—C1—C4—O1 −179.3 (3)
N2—Co1—O1—C4 1.4 (2) N2—C1—C4—O1 0.4 (4)
N2i—Co1—O1—C4 −178.6 (2) C2—C1—C4—O2 0.7 (5)
O1i—Co1—O1—C4 −137 (100) N2—C1—C4—O2 −179.5 (3)
C3—N2—C1—C2 0.1 (3) N1—C2—C5—O4 −4.3 (5)
Co1—N2—C1—C2 −179.5 (2) C1—C2—C5—O4 173.2 (3)
C3—N2—C1—C4 −179.7 (3) N1—C2—C5—O3 176.3 (3)
Co1—N2—C1—C4 0.8 (3) C1—C2—C5—O3 −6.3 (5)
C3—N1—C2—C1 0.3 (3) N2—C3—C6—C7 −73.9 (4)
C3—N1—C2—C5 178.3 (3) N1—C3—C6—C7 103.1 (4)
N2—C1—C2—N1 −0.2 (3)

Symmetry code: (i) −x+1, −y, −z+1.

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
N1—H1···O2Wii 0.86 1.96 2.786 (4) 160
O3—H3···O2 0.85 1.63 2.471 (3) 171
O1W—H1W···O4iii 0.85 1.86 2.708 (3) 173
O1W—H2W···O3iv 0.85 1.94 2.763 (3) 161
O2W—H3W···O1 0.85 2.33 3.077 (4) 147
O2W—H3W···O3W 0.85 2.44 3.091 (3) 134
O2W—H4W···O2Wv 0.85 2.04 2.883 (6) 172
O2W—H7W···O4vi 0.85 2.35 3.120 (4) 151
O3W—H5W···O2vii 0.85 2.37 3.040 (2) 136
O3W—H6W···O1 0.85 2.26 3.031 (2) 151
O3W—H6W···O2 0.85 2.43 3.040 (2) 129

Symmetry codes: (ii) x, y, z+1; (iii) x+1, y−1, z; (iv) −x+1, −y+1, −z+1; (v) −x, −y+1, −z; (vi) −x, −y+1, −z+1; (vii) −x+1, −y+1, −z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: XU5468).

References

  1. Bruker (2001). SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Bruker (2007). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Fan, R.-Z., Li, S.-J., Song, W.-D., Miao, D.-L. & Hu, S.-W. (2010). Acta Cryst. E66, m897–m898. [DOI] [PMC free article] [PubMed]
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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812008902/xu5468sup1.cif

e-68-0m373-sup1.cif (18.2KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812008902/xu5468Isup2.hkl

e-68-0m373-Isup2.hkl (113.9KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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