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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Mar 14;68(Pt 4):m409–m410. doi: 10.1107/S1600536812010367

Tetra­kis(μ-2-iodo­benzoato-κ2 O:O′)bis­[aqua­copper(II)]

Ömür Aydın a, Nagihan Çaylak Delibaş b, Hacali Necefoğlu a, Tuncer Hökelek c,*
PMCID: PMC3343818  PMID: 22589792

Abstract

In the centrosymmetric binuclear title complex, [Cu2(C7H4IO2)4(H2O)2], the two CuII ions [Cu⋯Cu = 2.6009 (5) Å] are bridged by four 2-iodo­benzoate (IB) ligands. The four nearest O atoms around each CuII ion form a distorted square-planar arrangement, the distorted square-pyramidal coordination being completed by the O atom of the water mol­ecule at a distance of 2.1525 (16) Å. The dihedral angle between the benzene ring and the carboxyl­ate group is 25.67 (13)° in one of the independent IB ligands and 6.44 (11)° in the other. The benzene rings of the two independent IB ligands are oriented at a dihedral angle of 86.61 (7)°. In the crystal, O—H⋯O inter­actions link the mol­ecules into a two-dimensional network. π–π contacts between the benzene rings [centroid–centroid distances = 3.810 (2) and 3.838 (2) Å] may further stabilize the structure.

Related literature  

For niacin, see: Krishnamachari (1974). For N,N-diethyl­nicotinamide, see: Bigoli et al. (1972). For related structures, see: Speier & Fulop (1989); Usubaliev et al. (1980); Hökelek et al. (1995, 2009a ,b ,c , 2011); Necefoğlu et al. (2010a ,b ).graphic file with name e-68-0m409-scheme1.jpg

Experimental  

Crystal data  

  • [Cu2(C7H4IO2)4(H2O)2]

  • M r = 1151.14

  • Triclinic, Inline graphic

  • a = 7.3563 (2) Å

  • b = 10.7448 (3) Å

  • c = 10.9066 (3) Å

  • α = 83.167 (3)°

  • β = 72.779 (2)°

  • γ = 77.227 (2)°

  • V = 801.73 (4) Å3

  • Z = 1

  • Mo Kα radiation

  • μ = 5.23 mm−1

  • T = 100 K

  • 0.39 × 0.36 × 0.24 mm

Data collection  

  • Bruker Kappa APEXII CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2005) T min = 0.150, T max = 0.285

  • 14335 measured reflections

  • 3987 independent reflections

  • 3818 reflections with I > 2σ(I)

  • R int = 0.025

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.019

  • wR(F 2) = 0.045

  • S = 1.16

  • 3987 reflections

  • 207 parameters

  • 2 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.61 e Å−3

  • Δρmin = −0.66 e Å−3

Data collection: APEX2 (Bruker, 2007); cell refinement: SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999) and PLATON (Spek, 2009).

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812010367/bq2345sup1.cif

e-68-0m409-sup1.cif (18.5KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812010367/bq2345Isup2.hkl

e-68-0m409-Isup2.hkl (191.4KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Selected bond lengths (Å).

Cu1—O1 1.9814 (16)
Cu1—O2i 1.9577 (16)
Cu1—O3 1.9533 (16)
Cu1—O4 1.9610 (16)

Symmetry code: (i) Inline graphic.

Table 2. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O5—H51⋯O1ii 0.83 (3) 2.09 (3) 2.839 (2) 152 (3)
O5—H52⋯O4ii 0.83 (3) 2.56 (4) 3.171 (2) 132 (3)

Symmetry code: (ii) Inline graphic.

Acknowledgments

The authors are indebted to Anadolu University and the Medicinal Plants and Medicine Research Centre of Anadolu University, Eskişehir, Turkey, for the use of X-ray diffractometer.

supplementary crystallographic information

Comment

As a part of our ongoing investigation on transition metal complexes of nicotinamide (NA), one form of niacin (Krishnamachari, 1974), and/or the nicotinic acid derivative N,N-diethylnicotinamide (DENA), an important respiratory stimulant (Bigoli et al., 1972), the title compound was synthesized and its crystal structure is reported herein.

The title compound is a binuclear compound, consisting of four iodobenzoate (IB) ligands. The structures of similar complexes of the Cu2+, Zn2+ and Co2+ ions, [Cu(C6H5COO)2(C5H5N)]2 (Usubaliev et al., 1980); [Cu(C6H5CO2)2(Py)]2 (Speier & Fulop, 1989); [Cu2(C6H5COO)4(C10H14N2O)2] (Hökelek et al., 1995) [Cu2(C8H7O2)4(C6H6N2O)2] (Necefoğlu et al., 2010a) [Zn2(C11H14NO2)4(C10H14N2O)2] (Hökelek et al., 2009a); [Zn2(C8H8NO2)4(C10H14N2O)2].2H2O (Hökelek et al., 2009b); [Zn2(C9H10NO2)4(C10H14N2O)2] (Hökelek et al., 2009c); [Zn2(C8H7O2)4(C10H14N2O)2] (Necefoğlu et al., 2010b) and [Co2(C11H14NO2)4(C10H14N2O)2] (Hökelek et al., 2011) have also been determined. In these structures, the benzoate ion acts as a bidentate ligand.

The title dimeric complex, [Cu2(IB)4(H2O)2], has a centre of symmetry and two CuII atoms are surrounded by four IB groups and two water molecules. The IB groups act as bridging ligands. The Cu···Cu' distance is 2.6009 (5) Å. The average Cu-O distance is 2.0012 (16) Å (Table 1), and four O atoms of the bridging IB ligands around each Cu atom form a distorted square plane. The Cu atom lies 0.1869 (3) Å below the least-squares plane. The average O-Cu-O bond angle is 92.48 (7)°. A distorted square-pyramidal arrangement around each Cu atom is completed by the water O atom at 2.1525 (16) Å from the Cu atom (Table 1). The O5-Cu1···Cu1' angle is 176.38 (5)° and the dihedral angle between plane through Cu1, O1, O2, C1, Cu1', O1', O2', C1' and the plane through Cu1, O3, O4, C8, Cu1', O3', O4', C8' is 89.13 (6)°. The dihedral angles between the planar carboxylate groups [(O1/O2/C1) and (O3/O4/C8)] and the adjacent benzene rings A (C2-C7) and B (C9-C14) are 25.67 (13) and 6.44 (11) °, respectively, while that between rings A and B is A/B = 86.61 (7)°.

In the crystal structure, intermolecular O-H···O interactions (Table 2) link the molecules into a two-dimensional network, in which they may be effective in the stabilization of the structure. The π–π contacts between the benzene rings, Cg1—Cg1i and Cg2—Cg2ii [symmetry codes: (i) 1 - x, -y, 1 - z, (ii) 2 - x, 1 - y, -z, where Cg1 and Cg2 are the centroids of the rings A (C2-C7) and B (C9-C14), respectively] may further stabilize the structure, with centroid-centroid distances of 3.810 (2) and 3.838 (2) Å].

Experimental

The title compound was prepared by the reaction of CuSO4.5H2O (1.25 g, 5 mmol) in H2O (100 ml) with sodium 2-iodobenzoate (2.70 g, 10 mmol) in H2O (50 ml). The mixture was set aside to crystallize at ambient temperature for one day, giving green single crystals.

Refinement

Atoms H51 and H52 (for H2O) were located in a difference Fourier map and refined isotropically. The C-bound H-atoms were positioned geometrically with C—H = 0.95 Å, for aromatic H-atoms, and constrained to ride on their parent atoms, with Uiso(H) = 1.2 × Ueq(C).

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound with the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. Primed atoms are generated by the symmetry operator:(') - x, - y, - z.

Crystal data

[Cu2(C7H4IO2)4(H2O)2] Z = 1
Mr = 1151.14 F(000) = 538
Triclinic, P1 Dx = 2.384 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 7.3563 (2) Å Cell parameters from 9932 reflections
b = 10.7448 (3) Å θ = 2.7–28.4°
c = 10.9066 (3) Å µ = 5.23 mm1
α = 83.167 (3)° T = 100 K
β = 72.779 (2)° Block, green
γ = 77.227 (2)° 0.39 × 0.36 × 0.24 mm
V = 801.73 (4) Å3

Data collection

Bruker Kappa APEXII CCD area-detector diffractometer 3987 independent reflections
Radiation source: fine-focus sealed tube 3818 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.025
φ and ω scans θmax = 28.4°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2005) h = −9→9
Tmin = 0.150, Tmax = 0.285 k = −14→14
14335 measured reflections l = −14→14

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.019 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.045 H atoms treated by a mixture of independent and constrained refinement
S = 1.16 w = 1/[σ2(Fo2) + (0.0134P)2 + 0.9745P] where P = (Fo2 + 2Fc2)/3
3987 reflections (Δ/σ)max = 0.002
207 parameters Δρmax = 0.61 e Å3
2 restraints Δρmin = −0.66 e Å3

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
I1 0.36263 (2) 0.882863 (16) 0.200310 (15) 0.01953 (5)
I2 −0.20180 (2) 0.701971 (15) 0.777993 (14) 0.01579 (5)
Cu1 0.65575 (4) 0.46820 (2) 0.53900 (2) 0.00769 (6)
O1 0.6886 (2) 0.64727 (16) 0.49086 (16) 0.0152 (3)
O2 0.4156 (2) 0.70018 (16) 0.43065 (16) 0.0153 (3)
O3 0.4755 (2) 0.52102 (17) 0.70398 (15) 0.0151 (3)
O4 0.7945 (2) 0.43067 (18) 0.35988 (15) 0.0171 (4)
O5 0.9024 (2) 0.41164 (17) 0.61507 (15) 0.0137 (3)
H51 1.010 (3) 0.375 (3) 0.573 (3) 0.031 (9)*
H52 0.920 (6) 0.462 (3) 0.660 (3) 0.050 (12)*
C1 0.5690 (3) 0.7241 (2) 0.4403 (2) 0.0111 (4)
C2 0.6219 (3) 0.8508 (2) 0.3878 (2) 0.0118 (4)
C3 0.5596 (3) 0.9249 (2) 0.2873 (2) 0.0137 (4)
C4 0.6304 (4) 1.0353 (2) 0.2372 (3) 0.0204 (5)
H4 0.5932 1.0828 0.1663 0.024*
C5 0.7553 (4) 1.0769 (3) 0.2899 (3) 0.0247 (6)
H5 0.8022 1.1529 0.2558 0.030*
C6 0.8112 (4) 1.0070 (2) 0.3925 (3) 0.0222 (5)
H6 0.8927 1.0367 0.4310 0.027*
C7 0.7483 (3) 0.8947 (2) 0.4384 (2) 0.0162 (5)
H7 0.7918 0.8456 0.5063 0.019*
C8 0.2958 (3) 0.5622 (2) 0.7233 (2) 0.0102 (4)
C9 0.1865 (3) 0.6078 (2) 0.8544 (2) 0.0095 (4)
C10 −0.0093 (3) 0.6684 (2) 0.8928 (2) 0.0115 (4)
C11 −0.0913 (3) 0.7150 (2) 1.0144 (2) 0.0170 (5)
H11 −0.2233 0.7576 1.0386 0.020*
C12 0.0184 (4) 0.6997 (3) 1.1009 (2) 0.0184 (5)
H12 −0.0385 0.7317 1.1841 0.022*
C13 0.2108 (4) 0.6377 (2) 1.0661 (2) 0.0160 (5)
H13 0.2860 0.6261 1.1255 0.019*
C14 0.2927 (3) 0.5930 (2) 0.9441 (2) 0.0124 (4)
H14 0.4251 0.5510 0.9206 0.015*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
I1 0.01733 (8) 0.02241 (9) 0.01989 (8) −0.00265 (6) −0.00902 (6) 0.00232 (6)
I2 0.01043 (8) 0.01989 (8) 0.01694 (7) 0.00135 (6) −0.00594 (6) −0.00335 (6)
Cu1 0.00592 (12) 0.00946 (13) 0.00725 (11) −0.00149 (9) −0.00117 (9) −0.00054 (9)
O1 0.0129 (8) 0.0116 (8) 0.0231 (8) −0.0056 (6) −0.0079 (7) 0.0048 (6)
O2 0.0119 (8) 0.0115 (8) 0.0249 (8) −0.0044 (6) −0.0082 (7) 0.0022 (6)
O3 0.0092 (8) 0.0237 (9) 0.0101 (7) 0.0023 (7) −0.0018 (6) −0.0046 (6)
O4 0.0096 (8) 0.0315 (10) 0.0090 (7) −0.0007 (7) −0.0018 (6) −0.0048 (7)
O5 0.0084 (8) 0.0194 (9) 0.0134 (7) −0.0012 (7) −0.0037 (6) −0.0024 (6)
C1 0.0111 (10) 0.0123 (10) 0.0082 (9) −0.0025 (8) 0.0004 (8) −0.0016 (8)
C2 0.0088 (10) 0.0101 (10) 0.0146 (10) −0.0011 (8) −0.0006 (8) −0.0009 (8)
C3 0.0089 (10) 0.0131 (11) 0.0166 (10) −0.0003 (8) −0.0009 (8) −0.0010 (8)
C4 0.0148 (12) 0.0171 (12) 0.0252 (12) −0.0012 (10) −0.0040 (10) 0.0069 (10)
C5 0.0194 (13) 0.0147 (12) 0.0396 (15) −0.0089 (10) −0.0066 (11) 0.0069 (11)
C6 0.0179 (12) 0.0147 (12) 0.0365 (14) −0.0071 (10) −0.0095 (11) 0.0011 (10)
C7 0.0152 (11) 0.0136 (11) 0.0197 (11) −0.0039 (9) −0.0048 (9) 0.0007 (9)
C8 0.0118 (10) 0.0091 (10) 0.0097 (9) −0.0040 (8) −0.0021 (8) 0.0002 (7)
C9 0.0092 (10) 0.0087 (10) 0.0095 (9) −0.0029 (8) −0.0004 (8) 0.0001 (7)
C10 0.0099 (10) 0.0119 (10) 0.0129 (10) −0.0016 (8) −0.0042 (8) 0.0001 (8)
C11 0.0115 (11) 0.0206 (12) 0.0146 (11) 0.0017 (9) 0.0003 (9) −0.0041 (9)
C12 0.0168 (12) 0.0238 (13) 0.0124 (10) −0.0005 (10) −0.0012 (9) −0.0068 (9)
C13 0.0161 (12) 0.0197 (12) 0.0124 (10) −0.0026 (9) −0.0041 (9) −0.0027 (9)
C14 0.0104 (10) 0.0134 (11) 0.0129 (10) −0.0006 (8) −0.0036 (8) −0.0006 (8)

Geometric parameters (Å, º)

I1—C3 2.100 (2) C4—H4 0.9500
I2—C10 2.102 (2) C5—C4 1.388 (4)
Cu1—Cu1i 2.6009 (5) C5—H5 0.9500
Cu1—O1 1.9814 (16) C6—C5 1.386 (4)
Cu1—O2i 1.9577 (16) C6—H6 0.9500
Cu1—O3 1.9533 (16) C7—C6 1.374 (3)
Cu1—O4 1.9610 (16) C7—H7 0.9500
Cu1—O5 2.1525 (16) C8—O4i 1.260 (3)
O1—C1 1.272 (3) C8—C9 1.498 (3)
O2—Cu1i 1.9577 (16) C9—C10 1.403 (3)
O2—C1 1.247 (3) C9—C14 1.397 (3)
O3—C8 1.260 (3) C10—C11 1.388 (3)
O4—C8i 1.260 (3) C11—C12 1.387 (3)
O5—H51 0.828 (18) C11—H11 0.9500
O5—H52 0.828 (19) C12—C13 1.384 (3)
C2—C1 1.499 (3) C12—H12 0.9500
C2—C7 1.397 (3) C13—C14 1.384 (3)
C3—C2 1.404 (3) C13—H13 0.9500
C3—C4 1.389 (3) C14—H14 0.9500
O1—Cu1—Cu1i 86.36 (5) C5—C4—C3 120.5 (2)
O1—Cu1—O5 95.68 (7) C5—C4—H4 119.8
O2i—Cu1—Cu1i 82.79 (5) C4—C5—H5 120.1
O2i—Cu1—O1 168.98 (7) C6—C5—C4 119.8 (2)
O2i—Cu1—O4 90.09 (8) C6—C5—H5 120.1
O2i—Cu1—O5 95.26 (7) C5—C6—H6 120.1
O3—Cu1—Cu1i 83.11 (5) C7—C6—C5 119.7 (2)
O3—Cu1—O1 89.93 (7) C7—C6—H6 120.1
O3—Cu1—O2i 90.68 (7) C2—C7—H7 119.1
O3—Cu1—O4 168.90 (7) C6—C7—C2 121.7 (2)
O3—Cu1—O5 93.88 (6) C6—C7—H7 119.1
O4—Cu1—Cu1i 86.00 (5) O3—C8—O4i 124.6 (2)
O4—Cu1—O1 87.22 (8) O3—C8—C9 116.33 (18)
O4—Cu1—O5 97.08 (7) O4i—C8—C9 119.06 (19)
O5—Cu1—Cu1i 176.38 (5) C10—C9—C8 125.79 (19)
C1—O1—Cu1 119.86 (14) C14—C9—C8 116.50 (19)
C1—O2—Cu1i 125.63 (15) C14—C9—C10 117.66 (19)
C8—O3—Cu1 124.96 (14) C9—C10—I2 125.52 (16)
C8i—O4—Cu1 121.09 (15) C11—C10—I2 113.88 (16)
Cu1—O5—H51 123 (2) C11—C10—C9 120.6 (2)
Cu1—O5—H52 117 (3) C10—C11—H11 119.8
H51—O5—H52 108 (4) C12—C11—C10 120.3 (2)
O1—C1—C2 116.23 (19) C12—C11—H11 119.8
O2—C1—O1 124.6 (2) C11—C12—H12 120.0
O2—C1—C2 119.2 (2) C13—C12—C11 120.1 (2)
C3—C2—C1 124.2 (2) C13—C12—H12 120.0
C7—C2—C1 117.6 (2) C12—C13—H13 120.3
C7—C2—C3 118.1 (2) C14—C13—C12 119.4 (2)
C2—C3—I1 125.24 (17) C14—C13—H13 120.3
C4—C3—I1 114.73 (17) C9—C14—H14 119.0
C4—C3—C2 120.0 (2) C13—C14—C9 121.9 (2)
C3—C4—H4 119.8 C13—C14—H14 119.0
Cu1i—Cu1—O1—C1 −2.22 (16) C3—C2—C7—C6 0.1 (4)
O2i—Cu1—O1—C1 7.9 (5) I1—C3—C2—C1 5.4 (3)
O3—Cu1—O1—C1 −85.32 (17) I1—C3—C2—C7 −177.62 (17)
O4—Cu1—O1—C1 83.95 (17) C4—C3—C2—C1 −174.1 (2)
O5—Cu1—O1—C1 −179.21 (16) C4—C3—C2—C7 2.9 (3)
Cu1i—Cu1—O3—C8 0.27 (18) I1—C3—C4—C5 177.2 (2)
O1—Cu1—O3—C8 86.62 (19) C2—C3—C4—C5 −3.3 (4)
O2i—Cu1—O3—C8 −82.38 (19) C6—C5—C4—C3 0.6 (4)
O4—Cu1—O3—C8 11.6 (5) C7—C6—C5—C4 2.3 (4)
O5—Cu1—O3—C8 −177.70 (18) C2—C7—C6—C5 −2.7 (4)
Cu1i—Cu1—O4—C8i −4.82 (18) O3—C8—C9—C10 173.4 (2)
O1—Cu1—O4—C8i −91.37 (18) O3—C8—C9—C14 −3.7 (3)
O2i—Cu1—O4—C8i 77.94 (18) O4i—C8—C9—C10 −5.2 (3)
O3—Cu1—O4—C8i −16.0 (5) O4i—C8—C9—C14 177.7 (2)
O5—Cu1—O4—C8i 173.25 (18) C8—C9—C10—C11 −175.2 (2)
Cu1—O1—C1—O2 8.5 (3) C8—C9—C10—I2 3.2 (3)
Cu1—O1—C1—C2 −170.57 (14) C14—C9—C10—I2 −179.69 (16)
Cu1i—O2—C1—O1 −11.8 (3) C14—C9—C10—C11 1.9 (3)
Cu1i—O2—C1—C2 167.28 (15) C8—C9—C14—C13 176.4 (2)
Cu1—O3—C8—O4i 3.5 (3) C10—C9—C14—C13 −1.0 (3)
Cu1—O3—C8—C9 −175.06 (14) I2—C10—C11—C12 179.93 (19)
C3—C2—C1—O1 153.2 (2) C9—C10—C11—C12 −1.5 (4)
C3—C2—C1—O2 −25.9 (3) C10—C11—C12—C13 0.1 (4)
C7—C2—C1—O1 −23.8 (3) C11—C12—C13—C14 0.8 (4)
C7—C2—C1—O2 157.1 (2) C12—C13—C14—C9 −0.4 (4)
C1—C2—C7—C6 177.3 (2)

Symmetry code: (i) −x+1, −y+1, −z+1.

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
O5—H51···O1ii 0.83 (3) 2.09 (3) 2.839 (2) 152 (3)
O5—H52···O4ii 0.83 (3) 2.56 (4) 3.171 (2) 132 (3)

Symmetry code: (ii) −x+2, −y+1, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BQ2345).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812010367/bq2345sup1.cif

e-68-0m409-sup1.cif (18.5KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812010367/bq2345Isup2.hkl

e-68-0m409-Isup2.hkl (191.4KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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