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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Mar 24;68(Pt 4):m476. doi: 10.1107/S1600536812011592

{2-[(2-Amino­cyclo­hex­yl)imino­meth­yl]phenolato}dioxidovanadium(V)

Xin-Zhi Sun a,*
PMCID: PMC3343864  PMID: 22589838

Abstract

In the title dioxidovanadium complex, [V(C13H17N2O)O2], the VV atom is in a square-based pyramidal coordination: the basal plane is defined by the phenolate O, imine N and amine N atoms of the tridentate Schiff base ligand, and by one oxide O atom. The apical position is occupied by the other oxide O atom. In the crystal, mol­ecules are connected by N—H⋯O and N—H⋯(O,O) hydrogen bonds, forming a tetra­mer.

Related literature  

For related structures and their proporties, see: Agarwal & Prasad (2006 ▶); Chohan & Sumrra (2010 ▶); Huo et al. (2004 ▶); Jing et al. (2005 ▶); Lodyga-Chruscinska et al. (2008 ▶); Xie et al. (2004 ▶); Yuan et al. (2009 ▶).graphic file with name e-68-0m476-scheme1.jpg

Experimental  

Crystal data  

  • [V(C13H17N2O)O2]

  • M r = 300.23

  • Tetragonal, Inline graphic

  • a = 19.120 (9) Å

  • c = 15.421 (3) Å

  • V = 5638 (4) Å3

  • Z = 16

  • Mo Kα radiation

  • μ = 0.71 mm−1

  • T = 298 K

  • 0.23 × 0.20 × 0.20 mm

Data collection  

  • Bruker SMART 1000 CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 2000 ▶) T min = 0.854, T max = 0.871

  • 19404 measured reflections

  • 2537 independent reflections

  • 1487 reflections with I > 2σ(I)

  • R int = 0.172

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.099

  • wR(F 2) = 0.203

  • S = 1.08

  • 2537 reflections

  • 172 parameters

  • H-atom parameters constrained

  • Δρmax = 0.44 e Å−3

  • Δρmin = −0.30 e Å−3

Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812011592/hb6676sup1.cif

e-68-0m476-sup1.cif (16.4KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812011592/hb6676Isup2.hkl

e-68-0m476-Isup2.hkl (124.9KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Selected bond lengths (Å).

V1—O2 1.607 (5)
V1—O3 1.621 (5)
V1—O1 1.900 (5)
V1—N2 2.095 (5)
V1—N1 2.137 (6)

Table 2. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A D⋯A D—H⋯A
N2—H2B⋯O2i 0.90 2.26 3.099 (7) 155
N2—H2B⋯O3i 0.90 2.55 3.229 (7) 133
N2—H2A⋯O3ii 0.90 2.07 2.948 (7) 166

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

The author acknowledges the Qingdao Agricultural University for financial support.

supplementary crystallographic information

Comment

Oxovanadium complexes with Schiff bases have been received much attention in bioinorganic chemistry (Chohan & Sumrra, 2010; Agarwal & Prasad, 2006; Lodyga-Chruscinska et al., 2008; Yuan et al., 2009). In this paper, the title new dioxovanadium(V) complex, (I), is reported.

In the title dioxovanadium complex, Fig. 1, the V atom is in a square pyramidal coordination. The basal plane of the square pyramid is defined by one phenolate O, one imine N, and one amine N atoms of a Schiff base ligand, and by one oxo O atom. The apical position of the square pyramid is occupied by the other oxo O atom. The bond lengths (Table 1) are comparable to those observed in similar oxovanadium complexes (Xie et al., 2004; Jing et al., 2005; Huo et al., 2004). In the crystal, adjacent molecules are linked through N–H···O and N—H···(O,O) hydrogen bonds (Table 2) to form a tetramer (Fig. 2).

Experimental

To a MeOH solution (30 ml) of salicylaldehyde (0.122 g, 1.0 mmol) was added a MeOH solution (20 ml) of cyclohexane-1,2-diamine (0.114 g, 1.0 mmol) with stirring. To the above mixture was added a MeOH solution (10 ml) of VO(acac)2 (0.265 g, 1.0 mmol) with stirring. The mixture was refluxed for 1 h, affording a clear yellow solution. This was allowed to stand at room temperature for a week and block-shaped single crystals were obtained by slow evaporation.

Refinement

H atoms attached to C and N atoms were placed in geometrically idealized positions with Csp2—H = 0.93 Å, Csp3—H = 0.97–0.98 Å, N—H = 0.90 Å, and constrained to ride on their parent atoms, with Uiso(H) = 1.2Ueq(C and N). Apparent disorder was evident in the cyclohexyl ring.

Figures

Fig. 1.

Fig. 1.

The structure of the title compound, with displacement ellipsoids drawn at the 30% probability level for Non-H atoms.

Fig. 2.

Fig. 2.

The tetrameric unit in the crystal, with hydrogen bonds shown as double-dashed lines.

Crystal data

[V(C13H17N2O)O2] Dx = 1.415 Mg m−3
Mr = 300.23 Mo Kα radiation, λ = 0.71073 Å
Tetragonal, I41/a Cell parameters from 1125 reflections
a = 19.120 (9) Å θ = 2.7–24.5°
c = 15.421 (3) Å µ = 0.71 mm−1
V = 5638 (4) Å3 T = 298 K
Z = 16 Block, yellow
F(000) = 2496 0.23 × 0.20 × 0.20 mm

Data collection

Bruker SMART 1000 CCD diffractometer 2537 independent reflections
Radiation source: fine-focus sealed tube 1487 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.172
ω scan θmax = 25.5°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 2000) h = −23→23
Tmin = 0.854, Tmax = 0.871 k = −23→23
19404 measured reflections l = −18→18

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.099 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.203 H-atom parameters constrained
S = 1.08 w = 1/[σ2(Fo2) + (0.0708P)2 + 16.0234P] where P = (Fo2 + 2Fc2)/3
2537 reflections (Δ/σ)max < 0.001
172 parameters Δρmax = 0.44 e Å−3
0 restraints Δρmin = −0.30 e Å−3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
V1 0.04762 (6) 0.08630 (6) 0.66104 (7) 0.0417 (4)
N1 0.1074 (3) 0.0188 (3) 0.5792 (4) 0.0574 (17)
N2 0.0524 (3) 0.1379 (3) 0.5413 (3) 0.0424 (14)
H2A 0.0122 0.1616 0.5337 0.051*
H2B 0.0872 0.1695 0.5436 0.051*
O1 0.0854 (3) 0.0299 (3) 0.7510 (3) 0.0589 (14)
O2 −0.0330 (2) 0.0631 (2) 0.6543 (3) 0.0581 (14)
O3 0.0526 (3) 0.1602 (2) 0.7122 (3) 0.0596 (14)
C1 0.1142 (4) −0.0770 (4) 0.6803 (5) 0.062 (2)
C2 0.0962 (4) −0.0379 (4) 0.7536 (5) 0.057 (2)
C3 0.0907 (5) −0.0727 (5) 0.8315 (6) 0.078 (3)
H3 0.0788 −0.0477 0.8811 0.093*
C4 0.1022 (6) −0.1422 (6) 0.8374 (7) 0.109 (4)
H4 0.0984 −0.1643 0.8909 0.130*
C5 0.1195 (6) −0.1808 (5) 0.7646 (8) 0.111 (4)
H5 0.1271 −0.2287 0.7692 0.133*
C6 0.1251 (5) −0.1488 (5) 0.6875 (7) 0.094 (3)
H6 0.1365 −0.1748 0.6384 0.112*
C7 0.1238 (4) −0.0435 (5) 0.5984 (5) 0.073 (3)
H7 0.1441 −0.0701 0.5546 0.087*
C8 0.1201 (5) 0.0398 (6) 0.4903 (6) 0.094 (3)
H8 0.1107 −0.0015 0.4546 0.112*
C9 0.0635 (4) 0.0936 (4) 0.4666 (5) 0.063 (2)
H9 0.0202 0.0670 0.4586 0.075*
C10 0.0774 (7) 0.1306 (6) 0.3813 (6) 0.110 (4)
H10A 0.0630 0.0998 0.3346 0.132*
H10B 0.0478 0.1717 0.3788 0.132*
C11 0.1431 (8) 0.1505 (8) 0.3664 (10) 0.167 (7)
H11A 0.1534 0.1903 0.4032 0.200*
H11B 0.1465 0.1661 0.3067 0.200*
C12 0.1999 (6) 0.0933 (7) 0.3823 (7) 0.115 (4)
H12A 0.1972 0.0579 0.3373 0.137*
H12B 0.2461 0.1141 0.3804 0.137*
C13 0.1873 (5) 0.0597 (7) 0.4717 (8) 0.134 (5)
H13A 0.2170 0.0187 0.4764 0.161*
H13B 0.2023 0.0926 0.5158 0.161*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
V1 0.0364 (7) 0.0422 (8) 0.0467 (7) 0.0001 (6) 0.0060 (6) −0.0070 (6)
N1 0.056 (4) 0.066 (4) 0.050 (4) 0.032 (3) 0.012 (3) 0.003 (3)
N2 0.033 (3) 0.039 (3) 0.055 (4) −0.001 (3) 0.000 (3) 0.006 (3)
O1 0.072 (4) 0.055 (3) 0.049 (3) 0.009 (3) −0.008 (3) −0.004 (3)
O2 0.054 (3) 0.049 (3) 0.071 (4) −0.002 (2) 0.009 (3) −0.005 (3)
O3 0.082 (4) 0.047 (3) 0.050 (3) −0.010 (3) 0.008 (3) −0.007 (2)
C1 0.076 (6) 0.061 (5) 0.048 (5) 0.010 (4) 0.013 (4) −0.001 (4)
C2 0.057 (5) 0.064 (6) 0.050 (5) 0.002 (4) −0.003 (4) 0.005 (4)
C3 0.105 (7) 0.073 (6) 0.055 (6) 0.018 (5) 0.010 (5) 0.002 (5)
C4 0.160 (11) 0.085 (8) 0.080 (7) 0.024 (7) 0.023 (7) 0.025 (7)
C5 0.167 (11) 0.051 (6) 0.115 (10) 0.037 (6) 0.030 (8) 0.003 (6)
C6 0.150 (10) 0.055 (6) 0.076 (7) 0.040 (6) 0.022 (6) 0.015 (5)
C7 0.073 (6) 0.097 (7) 0.048 (5) 0.044 (5) 0.005 (4) −0.012 (5)
C8 0.095 (8) 0.124 (8) 0.062 (6) 0.045 (6) 0.034 (5) 0.014 (6)
C9 0.083 (6) 0.063 (5) 0.043 (4) 0.028 (5) 0.003 (4) 0.002 (4)
C10 0.161 (12) 0.115 (9) 0.054 (6) 0.037 (8) 0.029 (7) 0.036 (6)
C11 0.142 (13) 0.200 (16) 0.158 (13) −0.015 (12) 0.024 (10) 0.123 (12)
C12 0.111 (9) 0.135 (10) 0.098 (8) −0.012 (8) 0.034 (7) 0.026 (7)
C13 0.058 (7) 0.215 (14) 0.129 (10) 0.002 (7) −0.005 (7) 0.079 (10)

Geometric parameters (Å, º)

V1—O2 1.607 (5) C5—H5 0.9300
V1—O3 1.621 (5) C6—H6 0.9300
V1—O1 1.900 (5) C7—H7 0.9300
V1—N2 2.095 (5) C8—C13 1.370 (12)
V1—N1 2.137 (6) C8—C9 1.536 (11)
N1—C7 1.267 (9) C8—H8 0.9800
N1—C8 1.448 (10) C9—C10 1.517 (11)
N2—C9 1.447 (8) C9—H9 0.9800
N2—H2A 0.9000 C10—C11 1.332 (15)
N2—H2B 0.9000 C10—H10A 0.9700
O1—C2 1.314 (8) C10—H10B 0.9700
C1—C6 1.394 (11) C11—C12 1.561 (17)
C1—C2 1.398 (10) C11—H11A 0.9700
C1—C7 1.428 (11) C11—H11B 0.9700
C2—C3 1.377 (11) C12—C13 1.541 (13)
C3—C4 1.350 (12) C12—H12A 0.9700
C3—H3 0.9300 C12—H12B 0.9700
C4—C5 1.383 (13) C13—H13A 0.9700
C4—H4 0.9300 C13—H13B 0.9700
C5—C6 1.342 (13)
O2—V1—O3 109.2 (3) N1—C7—H7 116.7
O2—V1—O1 104.8 (2) C1—C7—H7 116.7
O3—V1—O1 96.7 (2) C13—C8—N1 115.6 (9)
O2—V1—N2 96.6 (2) C13—C8—C9 115.2 (9)
O3—V1—N2 90.9 (2) N1—C8—C9 107.0 (6)
O1—V1—N2 153.4 (2) C13—C8—H8 106.1
O2—V1—N1 108.0 (2) N1—C8—H8 106.1
O3—V1—N1 141.5 (3) C9—C8—H8 106.1
O1—V1—N1 83.4 (2) N2—C9—C10 116.3 (7)
N2—V1—N1 75.0 (2) N2—C9—C8 107.8 (6)
C7—N1—C8 116.1 (7) C10—C9—C8 113.3 (7)
C7—N1—V1 124.2 (5) N2—C9—H9 106.2
C8—N1—V1 118.8 (5) C10—C9—H9 106.2
C9—N2—V1 115.6 (4) C8—C9—H9 106.2
C9—N2—H2A 108.4 C11—C10—C9 116.6 (11)
V1—N2—H2A 108.4 C11—C10—H10A 108.1
C9—N2—H2B 108.4 C9—C10—H10A 108.1
V1—N2—H2B 108.4 C11—C10—H10B 108.1
H2A—N2—H2B 107.4 C9—C10—H10B 108.1
C2—O1—V1 129.9 (5) H10A—C10—H10B 107.3
C6—C1—C2 119.9 (8) C10—C11—C12 115.4 (11)
C6—C1—C7 119.5 (8) C10—C11—H11A 108.4
C2—C1—C7 120.5 (7) C12—C11—H11A 108.4
O1—C2—C3 119.4 (7) C10—C11—H11B 108.4
O1—C2—C1 122.8 (7) C12—C11—H11B 108.4
C3—C2—C1 117.9 (8) H11A—C11—H11B 107.5
C4—C3—C2 121.4 (9) C13—C12—C11 108.9 (10)
C4—C3—H3 119.3 C13—C12—H12A 109.9
C2—C3—H3 119.3 C11—C12—H12A 109.9
C3—C4—C5 120.7 (10) C13—C12—H12B 109.9
C3—C4—H4 119.7 C11—C12—H12B 109.9
C5—C4—H4 119.7 H12A—C12—H12B 108.3
C6—C5—C4 119.7 (9) C8—C13—C12 116.7 (9)
C6—C5—H5 120.1 C8—C13—H13A 108.1
C4—C5—H5 120.1 C12—C13—H13A 108.1
C5—C6—C1 120.4 (9) C8—C13—H13B 108.1
C5—C6—H6 119.8 C12—C13—H13B 108.1
C1—C6—H6 119.8 H13A—C13—H13B 107.3
N1—C7—C1 126.6 (7)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
N2—H2B···O2i 0.90 2.26 3.099 (7) 155
N2—H2B···O3i 0.90 2.55 3.229 (7) 133
N2—H2A···O3ii 0.90 2.07 2.948 (7) 166

Symmetry codes: (i) −y+1/4, x+1/4, −z+5/4; (ii) y−1/4, −x+1/4, −z+5/4.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HB6676).

References

  1. Agarwal, R. K. & Prasad, S. (2006). Rev. Inorg. Chem. 26, 471–492.
  2. Bruker (2000). SMART and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Chohan, Z. H. & Sumrra, S. H. (2010). J. Enzyme Inhib. Med. Chem. 25, 599–607. [DOI] [PubMed]
  4. Huo, L.-H., Gao, S., Liu, J.-W., Zhao, H. & Ng, S. W. (2004). Acta Cryst. E60, m606–m608.
  5. Jing, B., Li, L., Wang, D., Xu, T. & Guo, X. (2005). Acta Cryst. E61, m2244–m2246.
  6. Lodyga-Chruscinska, E., Sanna, D., Garribba, E. & Micera, G. (2008). Dalton Trans. pp. 4903–4916. [DOI] [PubMed]
  7. Sheldrick, G. M. (2000). SADABS University of Göttingen, Germany.
  8. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  9. Xie, M.-J., Ping, Y.-S., Zheng, L.-D., Hui, J.-Z. & Peng, C. (2004). Acta Cryst. E60, m1382–m1383.
  10. Yuan, C. X., Lu, L. P., Gao, X. L., Wu, Y. B., Guo, M. L., Li, Y., Fu, X. Q. & Zhu, M. L. (2009). J. Biol. Inorg. Chem. 14, 841–851. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812011592/hb6676sup1.cif

e-68-0m476-sup1.cif (16.4KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812011592/hb6676Isup2.hkl

e-68-0m476-Isup2.hkl (124.9KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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