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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Mar 10;68(Pt 4):o1015. doi: 10.1107/S1600536812009464

(2E)-2-[(2H-1,3-Benzodioxol-5-yl)methyl­idene]-2,3-dihydro-1H-inden-1-one

Abdullah M Asiri a,b,, Hassan M Faidallah a, Khulud F Al-Nemari a,b, Seik Weng Ng a,c, Edward R T Tiekink c,*
PMCID: PMC3343980  PMID: 22589889

Abstract

In the title compound, C17H12O3, each of the five-membered rings in the inden-1-one and 1,3-benzodioxole residues is almost planar (r.m.s. deviations = 0.041 and 0.033 Å, respectively). A small twist about the single bond linking the two residues is evident [the C—C—C—C torsion angle = 8.7 (4)°]. Supra­molecular zigzag layers propagating in the ac plane are formed in the crystal via C—H⋯O inter­actions. The layers are linked via π–π inter­actions between the five- and six-membered rings of 1,3-benzodioxole residues [centroid–centroid distance = 3.4977 (14) Å].

Related literature  

For the biological activity of related species, see: Vera-DiVaio et al. (2009). For related structures, see: Asiri et al. (2012a ,b ).graphic file with name e-68-o1015-scheme1.jpg

Experimental  

Crystal data  

  • C17H12O3

  • M r = 264.27

  • Orthorhombic, Inline graphic

  • a = 12.6102 (12) Å

  • b = 7.3497 (10) Å

  • c = 26.569 (4) Å

  • V = 2462.5 (5) Å3

  • Z = 8

  • Mo Kα radiation

  • μ = 0.10 mm−1

  • T = 100 K

  • 0.35 × 0.10 × 0.05 mm

Data collection  

  • Agilent SuperNova Dual diffractometer with an Atlas detector

  • Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011) T min = 0.967, T max = 0.995

  • 6424 measured reflections

  • 2820 independent reflections

  • 1697 reflections with I > 2σ(I)

  • R int = 0.057

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.055

  • wR(F 2) = 0.136

  • S = 0.98

  • 2820 reflections

  • 181 parameters

  • H-atom parameters constrained

  • Δρmax = 0.26 e Å−3

  • Δρmin = −0.26 e Å−3

Data collection: CrysAlis PRO (Agilent, 2011); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812009464/hb6667sup1.cif

e-68-o1015-sup1.cif (17.5KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812009464/hb6667Isup2.hkl

e-68-o1015-Isup2.hkl (138.5KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812009464/hb6667Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C5—H5⋯O1i 0.95 2.47 3.290 (3) 144
C17—H17A⋯O1ii 0.99 2.46 3.302 (3) 143

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

The authors are grateful to the Center of Excellence for Advanced Materials Research and the Chemistry Department at King Abdulaziz University for providing research facilities. We also thank the Ministry of Higher Education (Malaysia) for funding structural studies through the High-Impact Research scheme (UM.C/HIR/MOHE/SC/12).

supplementary crystallographic information

Comment

The crystal and molecular structure of the title compound, 2-benzo[1,3]dioxol-5-ylmethylene-indan-1-one (I), has been determined in connection with recent structural studies on related derivatives (Asiri et al., 2012a; Asiri et al., 2012b). The motivation for the original synthesis was its relationship to biologically active compounds (Vera-DiVaio et al., 2009).

In the molecule of (I), Fig. 1, both five-membered rings are essentially planar. In the inden-1-one residue the r.m.s. deviation for the five atoms = 0.041 Å [maximum deviations = 0.033 (2) for the C8 atom and -0.033 (2) for the C7 atom] and in the 1,3-benzodioxole residue, the r.m.s. deviation = 0.033 Å [maximum deviations = 0.028 (3) [C17] and -0.028 (1) [O3]]. A twist in the molecule about the C10—C11 bond is evident with the C9—C10—C11—C16 torsion angle being 8.7 (4)°. The configuration about the C9═C10 bond [1.340 (3) Å] is E.

In the crystal packing, C—H···O interactions, Table 1, involving the bifurcated carbonyl-O atom link molecules into zigzag layers in the ac plane, Fig. 2. Layers are linked along the b axis viaπ–π interactions between the five- and six-membered rings of 1,3-benzodioxole residues [ring centroid···centroid distance = 3.4977 (14) Å, angle of inclination = 10.97 (12)° for symmetry operation 3/2 - x, -1/2 + y, z], Fig. 3.

Experimental

A solution of the piperonaldehyde (1.5 g, 0.01 M) in ethanol (20 ml) was added to a stirred solution of 1-indanone (1.3 g, 0.01 M) in (20%) ethanolic KOH (20 ml), and stirring was maintained at room temperature for 6 h. The reaction mixture was then poured into water (200 ml) and set aside overnight. The precipitated solid product was collected by filtration, washed with water, dried and recrystallized from ethanol as light-yellow prisms. Yield: 93%; M. pt: 450–451 K.

Refinement

Carbon-bound H-atoms were placed in calculated positions [C—H = 0.95 to 0.99 Å, Uiso(H) = 1.2Ueq(C)] and were included in the refinement in the riding model approximation.

Figures

Fig. 1.

Fig. 1.

The molecular structure of (I) showing displacement ellipsoids at the 50% probability level.

Fig. 2.

Fig. 2.

A view of the supramolecular layer in (I) in the ac plane. The C—H···O interactions are shown as orange dashed lines.

Fig. 3.

Fig. 3.

A view in projection down the a axis of the unit-cell contents of (I) showing the stacking of zigzag layers. The C—H···O and π–π interactions are shown as orange and purple dashed lines, respectively.

Crystal data

C17H12O3 F(000) = 1104
Mr = 264.27 Dx = 1.426 Mg m3
Orthorhombic, Pbca Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2ab Cell parameters from 930 reflections
a = 12.6102 (12) Å θ = 2.8–27.5°
b = 7.3497 (10) Å µ = 0.10 mm1
c = 26.569 (4) Å T = 100 K
V = 2462.5 (5) Å3 Prism, light-yellow
Z = 8 0.35 × 0.10 × 0.05 mm

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector 2820 independent reflections
Radiation source: SuperNova (Mo) X-ray Source 1697 reflections with I > 2σ(I)
Mirror monochromator Rint = 0.057
Detector resolution: 10.4041 pixels mm-1 θmax = 27.6°, θmin = 3.2°
ω scan h = −16→8
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011) k = −9→6
Tmin = 0.967, Tmax = 0.995 l = −34→22
6424 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.055 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.136 H-atom parameters constrained
S = 0.98 w = 1/[σ2(Fo2) + (0.0502P)2] where P = (Fo2 + 2Fc2)/3
2820 reflections (Δ/σ)max = 0.001
181 parameters Δρmax = 0.26 e Å3
0 restraints Δρmin = −0.26 e Å3

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.92949 (12) 0.5693 (2) 0.65488 (6) 0.0275 (4)
O2 0.61242 (12) 0.2489 (2) 0.41852 (5) 0.0283 (4)
O3 0.75515 (12) 0.1445 (2) 0.37080 (6) 0.0283 (4)
C1 0.83441 (19) 0.5422 (3) 0.64704 (8) 0.0212 (5)
C2 0.74657 (18) 0.5690 (3) 0.68310 (8) 0.0197 (5)
C3 0.75035 (19) 0.6274 (3) 0.73287 (8) 0.0231 (5)
H3 0.8154 0.6647 0.7476 0.028*
C4 0.65715 (19) 0.6298 (3) 0.76036 (8) 0.0267 (6)
H4 0.6578 0.6709 0.7943 0.032*
C5 0.5625 (2) 0.5723 (3) 0.73861 (9) 0.0291 (6)
H5 0.4996 0.5711 0.7583 0.035*
C6 0.55825 (19) 0.5165 (3) 0.68870 (8) 0.0263 (6)
H6 0.4931 0.4781 0.6742 0.032*
C7 0.65094 (18) 0.5179 (3) 0.66035 (8) 0.0210 (5)
C8 0.66690 (17) 0.4682 (3) 0.60554 (8) 0.0200 (5)
H8A 0.6391 0.3449 0.5983 0.024*
H8B 0.6314 0.5569 0.5831 0.024*
C9 0.78635 (18) 0.4750 (3) 0.59906 (8) 0.0199 (5)
C10 0.84909 (18) 0.4281 (3) 0.56046 (8) 0.0207 (5)
H10 0.9227 0.4445 0.5665 0.025*
C11 0.82372 (18) 0.3562 (3) 0.51066 (8) 0.0194 (5)
C12 0.90839 (19) 0.2975 (3) 0.48054 (8) 0.0254 (5)
H12 0.9785 0.3069 0.4934 0.030*
C13 0.89343 (19) 0.2255 (3) 0.43228 (8) 0.0266 (5)
H13 0.9514 0.1870 0.4121 0.032*
C14 0.79071 (19) 0.2135 (3) 0.41575 (8) 0.0221 (5)
C15 0.70630 (17) 0.2729 (3) 0.44464 (8) 0.0197 (5)
C16 0.71892 (18) 0.3447 (3) 0.49167 (8) 0.0210 (5)
H16 0.6599 0.3851 0.5109 0.025*
C17 0.64264 (19) 0.1752 (4) 0.37035 (8) 0.0296 (6)
H17A 0.6048 0.0593 0.3642 0.036*
H17B 0.6239 0.2616 0.3432 0.036*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0173 (9) 0.0395 (10) 0.0256 (9) −0.0010 (7) −0.0025 (7) −0.0025 (8)
O2 0.0210 (9) 0.0432 (11) 0.0206 (8) −0.0023 (8) −0.0017 (7) −0.0073 (7)
O3 0.0210 (9) 0.0422 (10) 0.0217 (8) −0.0029 (8) 0.0018 (7) −0.0092 (8)
C1 0.0204 (13) 0.0226 (12) 0.0206 (11) 0.0005 (10) −0.0012 (10) 0.0010 (9)
C2 0.0202 (12) 0.0193 (11) 0.0196 (11) 0.0004 (10) 0.0017 (10) 0.0007 (9)
C3 0.0221 (13) 0.0265 (12) 0.0207 (11) −0.0010 (10) −0.0025 (10) 0.0012 (10)
C4 0.0299 (14) 0.0312 (13) 0.0189 (11) 0.0050 (11) 0.0016 (11) −0.0016 (10)
C5 0.0233 (14) 0.0379 (15) 0.0261 (12) 0.0057 (11) 0.0056 (11) 0.0000 (11)
C6 0.0205 (13) 0.0352 (14) 0.0231 (12) 0.0021 (11) 0.0006 (10) 0.0018 (10)
C7 0.0195 (12) 0.0203 (11) 0.0230 (11) 0.0021 (10) 0.0002 (10) 0.0009 (9)
C8 0.0183 (12) 0.0218 (11) 0.0200 (11) −0.0009 (10) 0.0008 (10) −0.0004 (9)
C9 0.0186 (12) 0.0214 (11) 0.0199 (11) 0.0002 (10) −0.0001 (10) 0.0015 (9)
C10 0.0156 (12) 0.0231 (12) 0.0234 (11) −0.0021 (9) −0.0010 (10) 0.0030 (10)
C11 0.0195 (12) 0.0195 (11) 0.0191 (10) −0.0012 (10) 0.0013 (10) 0.0026 (9)
C12 0.0177 (13) 0.0333 (13) 0.0251 (11) −0.0028 (10) 0.0009 (10) 0.0006 (10)
C13 0.0183 (13) 0.0353 (13) 0.0260 (12) −0.0006 (11) 0.0052 (11) −0.0019 (10)
C14 0.0231 (13) 0.0257 (12) 0.0175 (10) −0.0013 (10) 0.0038 (10) −0.0005 (10)
C15 0.0169 (12) 0.0209 (11) 0.0213 (11) −0.0027 (9) −0.0028 (10) 0.0026 (9)
C16 0.0183 (12) 0.0252 (12) 0.0196 (11) −0.0017 (10) 0.0029 (10) 0.0024 (10)
C17 0.0248 (14) 0.0421 (16) 0.0218 (11) 0.0053 (11) −0.0002 (11) −0.0046 (11)

Geometric parameters (Å, º)

O1—C1 1.233 (3) C8—C9 1.517 (3)
O2—C15 1.384 (3) C8—H8A 0.9900
O2—C17 1.441 (3) C8—H8B 0.9900
O3—C14 1.373 (3) C9—C10 1.340 (3)
O3—C17 1.437 (3) C10—C11 1.460 (3)
C1—C2 1.478 (3) C10—H10 0.9500
C1—C9 1.496 (3) C11—C12 1.402 (3)
C2—C3 1.391 (3) C11—C16 1.417 (3)
C2—C7 1.400 (3) C12—C13 1.400 (3)
C3—C4 1.384 (3) C12—H12 0.9500
C3—H3 0.9500 C13—C14 1.371 (3)
C4—C5 1.392 (3) C13—H13 0.9500
C4—H4 0.9500 C14—C15 1.383 (3)
C5—C6 1.389 (3) C15—C16 1.366 (3)
C5—H5 0.9500 C16—H16 0.9500
C6—C7 1.391 (3) C17—H17A 0.9900
C6—H6 0.9500 C17—H17B 0.9900
C7—C8 1.515 (3)
C15—O2—C17 105.49 (17) C10—C9—C8 131.7 (2)
C14—O3—C17 105.78 (16) C1—C9—C8 108.44 (18)
O1—C1—C2 126.7 (2) C9—C10—C11 131.1 (2)
O1—C1—C9 126.3 (2) C9—C10—H10 114.5
C2—C1—C9 107.04 (19) C11—C10—H10 114.5
C3—C2—C7 121.5 (2) C12—C11—C16 119.2 (2)
C3—C2—C1 129.2 (2) C12—C11—C10 117.5 (2)
C7—C2—C1 109.26 (19) C16—C11—C10 123.3 (2)
C4—C3—C2 118.5 (2) C13—C12—C11 122.4 (2)
C4—C3—H3 120.8 C13—C12—H12 118.8
C2—C3—H3 120.8 C11—C12—H12 118.8
C3—C4—C5 120.3 (2) C14—C13—C12 116.4 (2)
C3—C4—H4 119.8 C14—C13—H13 121.8
C5—C4—H4 119.8 C12—C13—H13 121.8
C6—C5—C4 121.3 (2) C13—C14—O3 127.7 (2)
C6—C5—H5 119.4 C13—C14—C15 121.9 (2)
C4—C5—H5 119.4 O3—C14—C15 110.4 (2)
C7—C6—C5 118.9 (2) C16—C15—C14 122.7 (2)
C7—C6—H6 120.6 C16—C15—O2 127.4 (2)
C5—C6—H6 120.6 C14—C15—O2 109.86 (19)
C6—C7—C2 119.5 (2) C15—C16—C11 117.2 (2)
C6—C7—C8 129.1 (2) C15—C16—H16 121.4
C2—C7—C8 111.42 (19) C11—C16—H16 121.4
C9—C8—C7 103.49 (17) O3—C17—O2 108.22 (17)
C9—C8—H8A 111.1 O3—C17—H17A 110.1
C7—C8—H8A 111.1 O2—C17—H17A 110.1
C9—C8—H8B 111.1 O3—C17—H17B 110.1
C7—C8—H8B 111.1 O2—C17—H17B 110.1
H8A—C8—H8B 109.0 H17A—C17—H17B 108.4
C10—C9—C1 119.9 (2)
O1—C1—C2—C3 −0.8 (4) C1—C9—C10—C11 178.6 (2)
C9—C1—C2—C3 179.0 (2) C8—C9—C10—C11 1.0 (4)
O1—C1—C2—C7 −178.2 (2) C9—C10—C11—C12 −171.8 (2)
C9—C1—C2—C7 1.6 (2) C9—C10—C11—C16 8.7 (4)
C7—C2—C3—C4 1.6 (3) C16—C11—C12—C13 −0.7 (3)
C1—C2—C3—C4 −175.5 (2) C10—C11—C12—C13 179.7 (2)
C2—C3—C4—C5 1.0 (3) C11—C12—C13—C14 −0.5 (3)
C3—C4—C5—C6 −2.0 (4) C12—C13—C14—O3 −178.3 (2)
C4—C5—C6—C7 0.3 (3) C12—C13—C14—C15 1.4 (3)
C5—C6—C7—C2 2.2 (3) C17—O3—C14—C13 −175.9 (2)
C5—C6—C7—C8 −178.5 (2) C17—O3—C14—C15 4.3 (2)
C3—C2—C7—C6 −3.2 (3) C13—C14—C15—C16 −1.1 (4)
C1—C2—C7—C6 174.43 (19) O3—C14—C15—C16 178.7 (2)
C3—C2—C7—C8 177.4 (2) C13—C14—C15—O2 178.5 (2)
C1—C2—C7—C8 −5.0 (2) O3—C14—C15—O2 −1.7 (3)
C6—C7—C8—C9 −173.2 (2) C17—O2—C15—C16 177.9 (2)
C2—C7—C8—C9 6.1 (2) C17—O2—C15—C14 −1.7 (2)
O1—C1—C9—C10 3.9 (3) C14—C15—C16—C11 −0.2 (3)
C2—C1—C9—C10 −175.9 (2) O2—C15—C16—C11 −179.78 (19)
O1—C1—C9—C8 −177.9 (2) C12—C11—C16—C15 1.1 (3)
C2—C1—C9—C8 2.3 (2) C10—C11—C16—C15 −179.4 (2)
C7—C8—C9—C10 172.9 (2) C14—O3—C17—O2 −5.3 (2)
C7—C8—C9—C1 −4.9 (2) C15—O2—C17—O3 4.3 (2)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
C5—H5···O1i 0.95 2.47 3.290 (3) 144
C17—H17A···O1ii 0.99 2.46 3.302 (3) 143

Symmetry codes: (i) x−1/2, y, −z+3/2; (ii) x−1/2, −y+1/2, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HB6667).

References

  1. Agilent (2011). CrysAlis PRO Agilent Technologies, Yarnton, England.
  2. Asiri, A. M., Faidallah, H. M., Al-Nemari, K. F., Ng, S. W. & Tiekink, E. R. T. (2012a). Acta Cryst. E68, o755. [DOI] [PMC free article] [PubMed]
  3. Asiri, A. M., Faidallah, H. M., Al-Nemari, K. F., Ng, S. W. & Tiekink, E. R. T. (2012b). Acta Cryst. E68, o814. [DOI] [PMC free article] [PubMed]
  4. Brandenburg, K. (2006). DIAMOND Crystal Impact GbR, Bonn, Germany.
  5. Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.
  6. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  7. Vera-DiVaio, M. A. F., Freitas, A. C. C., Castro, F. H. C., de Albuquerque, S., Cabral, L. M., Rodrigues, C. R., Albuquerque, M. G., Martins, R. C. A., Henriques, M. G. M. O. & Dias, L. R. S. (2009). Bioorg. Med. Chem. 17, 295–302. [DOI] [PubMed]
  8. Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812009464/hb6667sup1.cif

e-68-o1015-sup1.cif (17.5KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812009464/hb6667Isup2.hkl

e-68-o1015-Isup2.hkl (138.5KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812009464/hb6667Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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