Abstract
In the title compound, C12H12ClF3N2OS, the dihedral angle between the benzene ring and the thiourea fragment is 69.41 (5)°. The thiourea N—H atoms adopt an anti conformation, such that one of them forms an intramolecular N—H⋯O hydrogen bond, generating an S(6) ring. In the crystal, both N—H groups form inversion dimers, one via a pair of N—H⋯S hydrogen bonds and one via a pair of N—H⋯O hydrogen bonds. These lead to R 2 2(8) and R 2 2(12) loops, respectively. Weak C—H⋯Cl, C—H⋯F, C—H⋯S and π–π [centroid–centroid separation = 3.7098 (6)Å and slippage = 1.853 Å] interactions also occur.
Related literature
For a related structure and background to thiourea derivatives, see: Yusof et al. (2011 ▶). For related structures, see: Khawar Rauf et al. (2006 ▶); Yusof et al. (2007 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).
Experimental
Crystal data
C12H12ClF3N2OS
M r = 324.75
Triclinic,
a = 7.8622 (1) Å
b = 8.9073 (1) Å
c = 11.0341 (1) Å
α = 113.687 (1)°
β = 103.419 (1)°
γ = 95.653 (1)°
V = 672.18 (2) Å3
Z = 2
Mo Kα radiation
μ = 0.47 mm−1
T = 100 K
0.41 × 0.19 × 0.15 mm
Data collection
Bruker SMART APEXII CCD diffractometer
Absorption correction: multi-scan (SADABS; Bruker, 2009) ▶ T min = 0.829, T max = 0.932
18148 measured reflections
4884 independent reflections
4304 reflections with I > 2σ(I)
R int = 0.021
Refinement
R[F 2 > 2σ(F 2)] = 0.030
wR(F 2) = 0.078
S = 0.97
4884 reflections
189 parameters
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.49 e Å−3
Δρmin = −0.32 e Å−3
Data collection: APEX2 (Bruker, 2009) ▶; cell refinement: SAINT (Bruker, 2009) ▶; data reduction: SAINT ▶; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶).
Supplementary Material
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812008859/hb6655sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812008859/hb6655Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812008859/hb6655Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N1—H1N1⋯O1 | 0.855 (16) | 1.971 (17) | 2.6486 (12) | 135.4 (16) |
| N1—H1N1⋯O1i | 0.855 (16) | 2.514 (17) | 3.2273 (12) | 141.6 (14) |
| N2—H1N2⋯S1ii | 0.849 (17) | 2.682 (17) | 3.5079 (10) | 164.7 (14) |
| C2—H2A⋯Cl1iii | 0.95 | 2.82 | 3.5535 (11) | 135 |
| C3—H3A⋯F1iv | 0.95 | 2.47 | 3.2617 (13) | 140 |
| C9—H9A⋯S1ii | 0.99 | 2.84 | 3.7829 (10) | 159 |
Symmetry codes: (i)
; (ii)
; (iii)
; (iv)
.
Acknowledgments
The authors thank the Malaysian Government, Universiti Malaysia Terengganu and Universiti Sains Malaysia for research facilities and the Fundamental Research Grant Scheme (FRGS) No. 203/PFIZIK/6711171 and FRGS 59178 to conduct this work.
supplementary crystallographic information
Comment
As part of our ongoing studies of thiourea derivatives we now describe the title compound. It is analogous to the previously reported N-(4-chlorobutanoyl)-N'- (2-fluorophenyl)thiourea (Yusof et al., 2011) except the fluoro atom is replaced by trifluoromethyl atom.
In the molecular structure (Fig. 1), the benzene ring (C1–C6) is essentially planar with maximum deviation of 0.011 (1) Å at atom C5. The intramolecular N1—H1N1···O1 hydrogen bond (Table 1) generates S(6) ring motifs (Berstein et al., 1995). The bond lengths and angles are within normal ranges and are comparable to the related structures (Khawar Rauf et al., 2006; Yusof et al., 2007).
The crystal packing is shown in Fig. 2. R12(6), R22(8), R22(12) ring motifs (Berstein et al. 1995) are formed by intermolecular N2—H1N2···S1, N1—H1N1···O1 and C9—H9A···S1 (Table 1) hydrogen bonds, respectively. Intermolecular C2—H2A···Cl1 and C3—H3A···F1 (Table 1) interactions linked the molecules into three-dimensional network. π–π interaction [Cg1···Cg1 (-1 - x, 1 - y, 1 - z) = 3.7098 (6) Å;] are also observed [Cg1: C1–C6].
Experimental
An equimolar amount of 2-(trifluoromethyl)aniline (1.14 g, 7.09 mmol) in 20 ml acetone was added drop-wise into a stirring acetone solution (75 ml) containing 4-chlorobutanoylchloride (1.00 g, 7.09 mmol) and ammonium thiocyanate (0.54 g, 7.09 mmol). The mixture was refluxed for 1 h. Then, the solution was filtered-off and left to evaporate at room temperature to yield colourless needles.
Refinement
N-bound H atoms was located from the difference map and refined freely, [N–H = 0.856 (17) and 0.849 (15) Å]. The remaining H atoms were positioned geometrically [C–H = 0.95 or 0.99 Å] and refined using a riding model with Uiso(H) = 1.2 Ueq(C).
Figures
Fig. 1.
The molecular structure of the title compound with 30% probability displacement ellipsoids.
Fig. 2.
The crystal packing of the title compound. The H atoms not involved in the intermolecular interactions (dashed lines) have been omitted for clarity.
Crystal data
| C12H12ClF3N2OS | Z = 2 |
| Mr = 324.75 | F(000) = 332 |
| Triclinic, P1 | Dx = 1.605 Mg m−3 |
| Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
| a = 7.8622 (1) Å | Cell parameters from 9937 reflections |
| b = 8.9073 (1) Å | θ = 2.5–32.6° |
| c = 11.0341 (1) Å | µ = 0.47 mm−1 |
| α = 113.687 (1)° | T = 100 K |
| β = 103.419 (1)° | Needle, colourless |
| γ = 95.653 (1)° | 0.41 × 0.19 × 0.15 mm |
| V = 672.18 (2) Å3 |
Data collection
| Bruker SMART APEXII CCD diffractometer | 4884 independent reflections |
| Radiation source: fine-focus sealed tube | 4304 reflections with I > 2σ(I) |
| Graphite monochromator | Rint = 0.021 |
| φ and ω scans | θmax = 32.6°, θmin = 2.1° |
| Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −11→11 |
| Tmin = 0.829, Tmax = 0.932 | k = −13→12 |
| 18148 measured reflections | l = −15→16 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.030 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.078 | H atoms treated by a mixture of independent and constrained refinement |
| S = 0.97 | w = 1/[σ2(Fo2) + (0.0365P)2 + 0.3295P] where P = (Fo2 + 2Fc2)/3 |
| 4884 reflections | (Δ/σ)max < 0.001 |
| 189 parameters | Δρmax = 0.49 e Å−3 |
| 0 restraints | Δρmin = −0.32 e Å−3 |
Special details
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Cl1 | 1.66943 (3) | 0.08190 (3) | 0.87826 (3) | 0.01972 (6) | |
| S1 | 0.77778 (4) | 0.12238 (3) | 0.48626 (3) | 0.01851 (6) | |
| F1 | 0.97525 (9) | 0.59829 (9) | 0.65758 (8) | 0.02506 (15) | |
| F2 | 0.86578 (9) | 0.81937 (8) | 0.70633 (8) | 0.02360 (14) | |
| F3 | 0.97036 (10) | 0.74396 (10) | 0.86623 (7) | 0.02883 (16) | |
| O1 | 1.11812 (11) | 0.39045 (10) | 0.93786 (8) | 0.02277 (17) | |
| N1 | 0.83210 (12) | 0.36357 (10) | 0.74177 (9) | 0.01434 (15) | |
| N2 | 1.02233 (11) | 0.17737 (10) | 0.71774 (9) | 0.01377 (15) | |
| C1 | 0.69392 (13) | 0.58116 (12) | 0.69974 (9) | 0.01248 (16) | |
| C2 | 0.54109 (13) | 0.64135 (12) | 0.66718 (10) | 0.01409 (16) | |
| H2A | 0.5523 | 0.7491 | 0.6683 | 0.017* | |
| C3 | 0.37240 (13) | 0.54429 (13) | 0.63303 (10) | 0.01548 (17) | |
| H3A | 0.2685 | 0.5864 | 0.6123 | 0.019* | |
| C4 | 0.35583 (14) | 0.38496 (13) | 0.62916 (10) | 0.01655 (18) | |
| H4A | 0.2404 | 0.3175 | 0.6038 | 0.020* | |
| C5 | 0.50789 (14) | 0.32467 (12) | 0.66239 (10) | 0.01537 (17) | |
| H5A | 0.4962 | 0.2162 | 0.6598 | 0.018* | |
| C6 | 0.67708 (13) | 0.42288 (12) | 0.69935 (9) | 0.01262 (16) | |
| C7 | 0.87834 (13) | 0.22901 (12) | 0.65719 (10) | 0.01306 (16) | |
| C8 | 1.13277 (14) | 0.25600 (12) | 0.85287 (10) | 0.01538 (17) | |
| C9 | 1.27517 (14) | 0.16553 (12) | 0.88836 (10) | 0.01620 (17) | |
| H9A | 1.2920 | 0.0827 | 0.8021 | 0.019* | |
| H9B | 1.2370 | 0.1043 | 0.9385 | 0.019* | |
| C10 | 1.45172 (14) | 0.29236 (12) | 0.97903 (10) | 0.01529 (17) | |
| H10A | 1.4875 | 0.3522 | 0.9272 | 0.018* | |
| H10B | 1.4310 | 0.3765 | 1.0628 | 0.018* | |
| C11 | 1.60482 (14) | 0.21825 (13) | 1.02413 (10) | 0.01720 (18) | |
| H11A | 1.5689 | 0.1538 | 1.0726 | 0.021* | |
| H11B | 1.7087 | 0.3100 | 1.0902 | 0.021* | |
| C12 | 0.87515 (13) | 0.68537 (12) | 0.73243 (11) | 0.01615 (17) | |
| H1N2 | 1.050 (2) | 0.0918 (19) | 0.6625 (16) | 0.021 (4)* | |
| H1N1 | 0.895 (2) | 0.413 (2) | 0.8270 (17) | 0.026 (4)* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Cl1 | 0.01900 (12) | 0.01807 (11) | 0.01890 (11) | 0.00744 (9) | 0.00681 (9) | 0.00360 (9) |
| S1 | 0.01973 (12) | 0.01899 (12) | 0.01193 (11) | 0.00983 (9) | 0.00168 (9) | 0.00240 (9) |
| F1 | 0.0166 (3) | 0.0231 (3) | 0.0371 (4) | 0.0074 (3) | 0.0159 (3) | 0.0098 (3) |
| F2 | 0.0204 (3) | 0.0169 (3) | 0.0348 (4) | 0.0028 (2) | 0.0088 (3) | 0.0125 (3) |
| F3 | 0.0184 (3) | 0.0350 (4) | 0.0206 (3) | −0.0043 (3) | −0.0044 (3) | 0.0078 (3) |
| O1 | 0.0251 (4) | 0.0206 (4) | 0.0152 (3) | 0.0129 (3) | 0.0010 (3) | 0.0015 (3) |
| N1 | 0.0152 (4) | 0.0144 (3) | 0.0114 (3) | 0.0069 (3) | 0.0024 (3) | 0.0038 (3) |
| N2 | 0.0141 (4) | 0.0126 (3) | 0.0131 (3) | 0.0064 (3) | 0.0030 (3) | 0.0039 (3) |
| C1 | 0.0115 (4) | 0.0135 (4) | 0.0110 (4) | 0.0036 (3) | 0.0033 (3) | 0.0038 (3) |
| C2 | 0.0140 (4) | 0.0149 (4) | 0.0128 (4) | 0.0056 (3) | 0.0042 (3) | 0.0048 (3) |
| C3 | 0.0117 (4) | 0.0216 (4) | 0.0130 (4) | 0.0064 (3) | 0.0040 (3) | 0.0066 (3) |
| C4 | 0.0130 (4) | 0.0209 (4) | 0.0150 (4) | 0.0023 (3) | 0.0051 (3) | 0.0070 (3) |
| C5 | 0.0157 (4) | 0.0157 (4) | 0.0147 (4) | 0.0034 (3) | 0.0051 (3) | 0.0064 (3) |
| C6 | 0.0126 (4) | 0.0138 (4) | 0.0105 (4) | 0.0053 (3) | 0.0033 (3) | 0.0039 (3) |
| C7 | 0.0138 (4) | 0.0128 (4) | 0.0129 (4) | 0.0048 (3) | 0.0043 (3) | 0.0053 (3) |
| C8 | 0.0155 (4) | 0.0154 (4) | 0.0138 (4) | 0.0060 (3) | 0.0030 (3) | 0.0052 (3) |
| C9 | 0.0157 (4) | 0.0146 (4) | 0.0155 (4) | 0.0065 (3) | 0.0011 (3) | 0.0049 (3) |
| C10 | 0.0171 (4) | 0.0127 (4) | 0.0138 (4) | 0.0051 (3) | 0.0037 (3) | 0.0037 (3) |
| C11 | 0.0163 (4) | 0.0174 (4) | 0.0140 (4) | 0.0061 (3) | 0.0033 (3) | 0.0031 (3) |
| C12 | 0.0127 (4) | 0.0155 (4) | 0.0175 (4) | 0.0032 (3) | 0.0037 (3) | 0.0051 (3) |
Geometric parameters (Å, º)
| Cl1—C11 | 1.8038 (10) | C2—H2A | 0.9500 |
| S1—C7 | 1.6748 (10) | C3—C4 | 1.3947 (14) |
| F1—C12 | 1.3455 (12) | C3—H3A | 0.9500 |
| F2—C12 | 1.3404 (12) | C4—C5 | 1.3904 (14) |
| F3—C12 | 1.3430 (12) | C4—H4A | 0.9500 |
| O1—C8 | 1.2255 (12) | C5—C6 | 1.3905 (14) |
| N1—C7 | 1.3358 (12) | C5—H5A | 0.9500 |
| N1—C6 | 1.4298 (12) | C8—C9 | 1.5112 (14) |
| N1—H1N1 | 0.856 (17) | C9—C10 | 1.5305 (14) |
| N2—C8 | 1.3813 (13) | C9—H9A | 0.9900 |
| N2—C7 | 1.3921 (12) | C9—H9B | 0.9900 |
| N2—H1N2 | 0.849 (15) | C10—C11 | 1.5082 (14) |
| C1—C2 | 1.3935 (13) | C10—H10A | 0.9900 |
| C1—C6 | 1.4011 (13) | C10—H10B | 0.9900 |
| C1—C12 | 1.5013 (14) | C11—H11A | 0.9900 |
| C2—C3 | 1.3888 (14) | C11—H11B | 0.9900 |
| C7—N1—C6 | 123.49 (8) | O1—C8—N2 | 122.61 (9) |
| C7—N1—H1N1 | 118.1 (11) | O1—C8—C9 | 122.16 (9) |
| C6—N1—H1N1 | 118.3 (11) | N2—C8—C9 | 115.22 (8) |
| C8—N2—C7 | 127.83 (8) | C8—C9—C10 | 109.74 (8) |
| C8—N2—H1N2 | 116.8 (10) | C8—C9—H9A | 109.7 |
| C7—N2—H1N2 | 115.1 (10) | C10—C9—H9A | 109.7 |
| C2—C1—C6 | 119.79 (9) | C8—C9—H9B | 109.7 |
| C2—C1—C12 | 119.61 (9) | C10—C9—H9B | 109.7 |
| C6—C1—C12 | 120.59 (8) | H9A—C9—H9B | 108.2 |
| C3—C2—C1 | 120.22 (9) | C11—C10—C9 | 115.10 (8) |
| C3—C2—H2A | 119.9 | C11—C10—H10A | 108.5 |
| C1—C2—H2A | 119.9 | C9—C10—H10A | 108.5 |
| C2—C3—C4 | 119.88 (9) | C11—C10—H10B | 108.5 |
| C2—C3—H3A | 120.1 | C9—C10—H10B | 108.5 |
| C4—C3—H3A | 120.1 | H10A—C10—H10B | 107.5 |
| C5—C4—C3 | 120.14 (9) | C10—C11—Cl1 | 111.48 (7) |
| C5—C4—H4A | 119.9 | C10—C11—H11A | 109.3 |
| C3—C4—H4A | 119.9 | Cl1—C11—H11A | 109.3 |
| C4—C5—C6 | 120.12 (9) | C10—C11—H11B | 109.3 |
| C4—C5—H5A | 119.9 | Cl1—C11—H11B | 109.3 |
| C6—C5—H5A | 119.9 | H11A—C11—H11B | 108.0 |
| C5—C6—C1 | 119.81 (9) | F2—C12—F3 | 106.59 (8) |
| C5—C6—N1 | 119.42 (8) | F2—C12—F1 | 106.08 (8) |
| C1—C6—N1 | 120.72 (9) | F3—C12—F1 | 106.43 (8) |
| N1—C7—N2 | 116.42 (8) | F2—C12—C1 | 112.63 (8) |
| N1—C7—S1 | 124.76 (7) | F3—C12—C1 | 112.29 (8) |
| N2—C7—S1 | 118.81 (7) | F1—C12—C1 | 112.35 (8) |
| C6—C1—C2—C3 | −0.66 (14) | C8—N2—C7—N1 | −5.61 (15) |
| C12—C1—C2—C3 | 178.23 (9) | C8—N2—C7—S1 | 173.63 (8) |
| C1—C2—C3—C4 | −1.03 (14) | C7—N2—C8—O1 | −2.41 (17) |
| C2—C3—C4—C5 | 1.43 (14) | C7—N2—C8—C9 | 178.37 (9) |
| C3—C4—C5—C6 | −0.13 (15) | O1—C8—C9—C10 | −40.56 (14) |
| C4—C5—C6—C1 | −1.56 (14) | N2—C8—C9—C10 | 138.66 (9) |
| C4—C5—C6—N1 | 176.03 (9) | C8—C9—C10—C11 | 178.93 (8) |
| C2—C1—C6—C5 | 1.95 (14) | C9—C10—C11—Cl1 | 65.16 (10) |
| C12—C1—C6—C5 | −176.93 (9) | C2—C1—C12—F2 | −9.09 (13) |
| C2—C1—C6—N1 | −175.61 (8) | C6—C1—C12—F2 | 169.80 (8) |
| C12—C1—C6—N1 | 5.52 (13) | C2—C1—C12—F3 | 111.26 (10) |
| C7—N1—C6—C5 | 66.17 (13) | C6—C1—C12—F3 | −69.86 (12) |
| C7—N1—C6—C1 | −116.27 (11) | C2—C1—C12—F1 | −128.80 (9) |
| C6—N1—C7—N2 | −173.57 (9) | C6—C1—C12—F1 | 50.08 (12) |
| C6—N1—C7—S1 | 7.24 (14) |
Hydrogen-bond geometry (Å, º)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N1—H1N1···O1 | 0.855 (16) | 1.971 (17) | 2.6486 (12) | 135.4 (16) |
| N1—H1N1···O1i | 0.855 (16) | 2.514 (17) | 3.2273 (12) | 141.6 (14) |
| N2—H1N2···S1ii | 0.849 (17) | 2.682 (17) | 3.5079 (10) | 164.7 (14) |
| C2—H2A···Cl1iii | 0.95 | 2.82 | 3.5535 (11) | 135 |
| C3—H3A···F1iv | 0.95 | 2.47 | 3.2617 (13) | 140 |
| C9—H9A···S1ii | 0.99 | 2.84 | 3.7829 (10) | 159 |
Symmetry codes: (i) −x+2, −y+1, −z+2; (ii) −x+2, −y, −z+1; (iii) x−1, y+1, z; (iv) x−1, y, z.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HB6655).
References
- Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 34, 1555–1573.
- Bruker (2009). APEX2, SAINT and SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
- Cosier, J. & Glazer, A. M. (1986). J. Appl. Cryst. 19, 105–107.
- Khawar Rauf, M., Badshah, A. & Bolte, M. (2006). Acta Cryst. E62, o4299–o4301.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]
- Yusof, M. S. M., Embong, N. F., Othman, E. A. & Yamin, B. M. (2011). Acta Cryst. E67, o1849. [DOI] [PMC free article] [PubMed]
- Yusof, M. S. M., Yaakob, W. N. A., Kadir, M. A. & Yamin, B. M. (2007). Acta Cryst. E63, o241–o243.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812008859/hb6655sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812008859/hb6655Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812008859/hb6655Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


