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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Mar 10;68(Pt 4):o1030. doi: 10.1107/S1600536812009865

(E)-4-Amino-N-(1,2-dihydro­pyridin-2-yl­idene)benzene­sulfonamide nitro­methane monosolvate

Mostafa M Ghorab a, Mansour S Al-Said a, Hazem A Ghabbour b, Suchada Chantrapromma c,, Hoong-Kun Fun d,*,§
PMCID: PMC3343993  PMID: 22589902

Abstract

In the title solvate, C11H11N3O2S·CH3NO2, the dihedral angle between the benzene ring and the N-containing ring is 85.94 (11)°, and an approximate V shape arises for the sulfonamide mol­ecule. In the crystal, N—H⋯O and N—H⋯N hydrogen bonds and weak C—H⋯O inter­actions link the sulfonamide mol­ecules into a three-dimensional network. The nitro­methane solvent mol­ecules are located in the inter­stitial sites in the sulfonamide network.

Related literature  

For background to the applications of sulfonamide compounds, see: Ghorab et al. (2009);graphic file with name e-68-o1030-scheme1.jpg

Experimental  

Crystal data  

  • C11H11N3O2S·CH3NO2

  • M r = 310.34

  • Orthorhombic, Inline graphic

  • a = 10.5179 (3) Å

  • b = 12.4857 (3) Å

  • c = 22.7237 (6) Å

  • V = 2984.15 (14) Å3

  • Z = 8

  • Cu Kα radiation

  • μ = 2.14 mm−1

  • T = 296 K

  • 0.54 × 0.43 × 0.31 mm

Data collection  

  • Bruker SMART APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2009) T min = 0.392, T max = 0.554

  • 14569 measured reflections

  • 2799 independent reflections

  • 2386 reflections with I > 2σ(I)

  • R int = 0.062

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.045

  • wR(F 2) = 0.144

  • S = 1.07

  • 2799 reflections

  • 196 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.25 e Å−3

  • Δρmin = −0.42 e Å−3

Data collection: APEX2 (Bruker, 2009); cell refinement: SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812009865/hb6660sup1.cif

e-68-o1030-sup1.cif (24.3KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812009865/hb6660Isup2.hkl

e-68-o1030-Isup2.hkl (137.5KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812009865/hb6660Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N2—H1N2⋯O2i 0.87 2.10 2.971 (3) 174
N2—H2N2⋯O1ii 0.87 2.34 3.162 (3) 157
N3—H1N3⋯N1iii 0.86 (2) 2.09 (2) 2.948 (2) 178 (2)
C8—H8A⋯O1iii 0.93 2.52 3.160 (3) 126

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

The authors are grateful for the sponsorship of the Research Center, College of Pharmacy and the Deanship of Scientific Research, King Saud University, Riyadh, Saudi Arabia. HKF and SC thank Universiti Sains Malaysia for the Research University Grant No. 1001/PFIZIK/811160. HKF also thanks the King Saud University, Riyadh, Saudi Arabia, for the award of a visiting Professorship (December 23rd 2011 to January 14th 2012).

supplementary crystallographic information

Comment

As part of our ongoing studies of sulfonamides with potential biological activities (Ghorab et al. (2009), the present investigation deals with the synthesis of the title compound, (I), (Fig. 1) a sulfonamide bearing a pyridine moiety to be evaluated as anticancer agent.

The environment of S atom is distorted tetrahedral geometry [angles around S atom are 104.49 (9) - 115.82 (10)°] with two O atoms, one N atom of the amide group and one C atom of the benzene ring. The dihedral angle between the benzene ring and the N atom-containing ring is 85.94 (11)°. The amino group is co-planar with its bound benzene ring with r.m.s. 0.0126 (2) Å for the seven non H atoms (C1–C6/N2).

In the crystal (Fig. 2), the molecules of sulfonamide derivative are linked by N—H···O and N—H···N hydrogen bonds and weak C···H···O interactions (Table 1) into a three dimensional network. The nitromethane solvent molecules are located in the interstitial sites of the sulfonamide network.

Experimental

A mixture of (E)-3-(dimethylamino)-1-(thiophen-2-yl)prop-2-en-1-one (1.81 g, 0.01 mole) and sulfapyridine (2.49 g, 0.01 mole) in absolute ethanol (30 ml) was heated under reflux for 12 hr. The reaction mixture was filtered and pink blocks of (I) were obtained by the slow evaporation of an ethanol/nitromethane (3:1) solution at room temperature.

Refinement

Amide H atom was located in a difference map and refined isotropically. The remaining H atoms were placed in calculated positions with d(N-H) = 0.87 Å, d(C-H) = 0.93 for aromatic, and 0.96 Å for CH3 atoms. The Uiso values were constrained to be 1.5Ueq of the carrier atom for methyl H atoms and 1.2Ueq for the remaining H atoms. A rotating group model was used for the methyl groups.

Figures

Fig. 1.

Fig. 1.

The structure of (I), showing 30% probability displacement ellipsoids.

Fig. 2.

Fig. 2.

The crystal packing of (I) viewed along the a axis, showing three dimensional network.

Crystal data

C11H11N3O2S·CH3NO2 F(000) = 1296
Mr = 310.34 Dx = 1.381 Mg m3
Orthorhombic, Pbca Cu Kα radiation, λ = 1.54178 Å
Hall symbol: -P 2ac 2ab Cell parameters from 2799 reflections
a = 10.5179 (3) Å θ = 5.7–71.6°
b = 12.4857 (3) Å µ = 2.14 mm1
c = 22.7237 (6) Å T = 296 K
V = 2984.15 (14) Å3 Block, pink
Z = 8 0.54 × 0.43 × 0.31 mm

Data collection

Bruker SMART APEXII CCD diffractometer 2799 independent reflections
Radiation source: fine-focus sealed tube 2386 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.062
φ and ω scans θmax = 71.6°, θmin = 5.7°
Absorption correction: multi-scan (SADABS; Bruker, 2009) h = −11→10
Tmin = 0.392, Tmax = 0.554 k = −15→15
14569 measured reflections l = −27→27

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.045 H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.144 w = 1/[σ2(Fo2) + (0.0843P)2 + 0.5181P] where P = (Fo2 + 2Fc2)/3
S = 1.07 (Δ/σ)max = 0.001
2799 reflections Δρmax = 0.25 e Å3
196 parameters Δρmin = −0.42 e Å3
0 restraints Extinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methods Extinction coefficient: 0.0022 (3)

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
S1 0.03202 (5) 0.52678 (4) 0.13912 (2) 0.0537 (2)
O1 −0.04470 (16) 0.62229 (11) 0.13586 (7) 0.0664 (4)
O2 0.14832 (16) 0.53613 (12) 0.17203 (7) 0.0696 (4)
N1 0.05275 (16) 0.49231 (13) 0.07212 (8) 0.0549 (4)
N2 −0.27661 (19) 0.18108 (17) 0.24298 (10) 0.0806 (6)
H1N2 −0.2408 0.1417 0.2699 0.097*
H2N2 −0.3364 0.1534 0.2213 0.097*
N3 0.13565 (17) 0.39072 (14) −0.00078 (8) 0.0587 (4)
H1N3 0.082 (2) 0.4266 (17) −0.0216 (10) 0.054 (6)*
C1 −0.05963 (18) 0.42658 (14) 0.17206 (8) 0.0499 (4)
C2 −0.1786 (2) 0.40208 (16) 0.14851 (9) 0.0547 (5)
H2A −0.2093 0.4405 0.1165 0.066*
C3 −0.2504 (2) 0.32171 (17) 0.17237 (9) 0.0576 (5)
H3A −0.3299 0.3063 0.1565 0.069*
C4 −0.20549 (19) 0.26212 (16) 0.22053 (9) 0.0567 (5)
C5 −0.0891 (2) 0.29027 (18) 0.24482 (9) 0.0628 (5)
H5A −0.0599 0.2542 0.2780 0.075*
C6 −0.0163 (2) 0.37042 (17) 0.22084 (9) 0.0576 (5)
H6A 0.0623 0.3871 0.2373 0.069*
C7 0.13465 (18) 0.41433 (15) 0.05728 (9) 0.0530 (4)
C8 0.2136 (2) 0.3168 (2) −0.02582 (12) 0.0741 (6)
H8A 0.2104 0.3049 −0.0662 0.089*
C9 0.2955 (3) 0.2609 (2) 0.00786 (14) 0.0855 (8)
H9A 0.3498 0.2106 −0.0088 0.103*
C10 0.2968 (3) 0.2799 (2) 0.06752 (14) 0.0857 (8)
H10A 0.3523 0.2413 0.0913 0.103*
C11 0.2185 (2) 0.35419 (18) 0.09265 (11) 0.0708 (6)
H11A 0.2205 0.3651 0.1331 0.085*
O3 0.0798 (3) 0.0856 (2) 0.04675 (11) 0.1239 (9)
O4 −0.0699 (2) −0.0317 (2) 0.06434 (11) 0.1120 (8)
N4 0.0045 (3) 0.0378 (3) 0.08153 (15) 0.1093 (9)
C12 0.0102 (4) 0.0684 (4) 0.14512 (17) 0.1265 (14)
H12A −0.0722 0.0921 0.1578 0.190*
H12B 0.0706 0.1253 0.1503 0.190*
H12C 0.0358 0.0076 0.1681 0.190*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S1 0.0566 (4) 0.0492 (3) 0.0551 (3) −0.00291 (18) −0.00473 (19) −0.00030 (17)
O1 0.0793 (11) 0.0487 (8) 0.0712 (10) 0.0061 (7) 0.0029 (7) 0.0001 (6)
O2 0.0653 (10) 0.0710 (9) 0.0724 (10) −0.0133 (7) −0.0152 (8) −0.0063 (7)
N1 0.0541 (9) 0.0559 (8) 0.0546 (9) 0.0045 (7) −0.0008 (7) 0.0066 (7)
N2 0.0624 (12) 0.0869 (13) 0.0923 (15) −0.0077 (10) −0.0068 (10) 0.0371 (11)
N3 0.0544 (10) 0.0631 (9) 0.0587 (10) 0.0083 (8) −0.0006 (8) 0.0047 (8)
C1 0.0513 (10) 0.0518 (9) 0.0464 (9) 0.0002 (8) −0.0059 (7) −0.0004 (7)
C2 0.0549 (11) 0.0588 (10) 0.0505 (10) 0.0017 (8) −0.0082 (8) 0.0071 (8)
C3 0.0479 (10) 0.0659 (11) 0.0589 (11) −0.0003 (8) −0.0077 (8) 0.0038 (9)
C4 0.0494 (10) 0.0626 (10) 0.0580 (11) 0.0039 (9) 0.0040 (8) 0.0082 (8)
C5 0.0618 (13) 0.0740 (12) 0.0525 (10) 0.0043 (10) −0.0075 (9) 0.0153 (9)
C6 0.0546 (11) 0.0663 (11) 0.0518 (11) −0.0017 (9) −0.0110 (8) 0.0050 (8)
C7 0.0476 (10) 0.0520 (9) 0.0595 (11) −0.0021 (8) −0.0016 (8) 0.0072 (8)
C8 0.0688 (14) 0.0791 (14) 0.0744 (14) 0.0156 (12) 0.0052 (11) −0.0043 (11)
C9 0.0784 (17) 0.0795 (15) 0.0985 (19) 0.0293 (14) 0.0006 (14) −0.0035 (14)
C10 0.0832 (17) 0.0737 (14) 0.100 (2) 0.0258 (13) −0.0213 (15) 0.0060 (13)
C11 0.0739 (15) 0.0672 (12) 0.0712 (14) 0.0110 (11) −0.0150 (11) 0.0046 (10)
O3 0.1205 (18) 0.148 (2) 0.1029 (17) −0.0638 (17) 0.0212 (14) −0.0115 (15)
O4 0.0996 (15) 0.141 (2) 0.0955 (15) −0.0502 (15) 0.0236 (13) −0.0211 (13)
N4 0.0867 (17) 0.139 (2) 0.103 (2) −0.0042 (17) 0.0109 (16) −0.0112 (17)
C12 0.122 (3) 0.169 (4) 0.089 (2) −0.013 (3) 0.004 (2) −0.033 (2)

Geometric parameters (Å, º)

S1—O2 1.4384 (16) C5—C6 1.373 (3)
S1—O1 1.4418 (15) C5—H5A 0.9300
S1—N1 1.5971 (18) C6—H6A 0.9300
S1—C1 1.7477 (19) C7—C11 1.410 (3)
N1—C7 1.343 (3) C8—C9 1.347 (4)
N2—C4 1.358 (3) C8—H8A 0.9300
N2—H1N2 0.8700 C9—C10 1.377 (4)
N2—H2N2 0.8699 C9—H9A 0.9300
N3—C7 1.352 (3) C10—C11 1.365 (4)
N3—C8 1.359 (3) C10—H10A 0.9300
N3—H1N3 0.86 (2) C11—H11A 0.9300
C1—C6 1.389 (3) O3—N4 1.268 (4)
C1—C2 1.395 (3) O4—N4 1.232 (4)
C2—C3 1.368 (3) N4—C12 1.496 (5)
C2—H2A 0.9300 C12—H12A 0.9600
C3—C4 1.405 (3) C12—H12B 0.9600
C3—H3A 0.9300 C12—H12C 0.9600
C4—C5 1.388 (3)
O2—S1—O1 115.82 (10) C5—C6—C1 120.10 (19)
O2—S1—N1 113.66 (10) C5—C6—H6A 119.9
O1—S1—N1 104.49 (9) C1—C6—H6A 119.9
O2—S1—C1 107.73 (10) N1—C7—N3 114.09 (17)
O1—S1—C1 107.78 (9) N1—C7—C11 130.1 (2)
N1—S1—C1 106.90 (9) N3—C7—C11 115.81 (19)
C7—N1—S1 121.49 (14) C9—C8—N3 120.0 (2)
C4—N2—H1N2 116.5 C9—C8—H8A 120.0
C4—N2—H2N2 118.8 N3—C8—H8A 120.0
H1N2—N2—H2N2 119.1 C8—C9—C10 118.4 (2)
C7—N3—C8 124.15 (19) C8—C9—H9A 120.8
C7—N3—H1N3 114.7 (15) C10—C9—H9A 120.8
C8—N3—H1N3 121.1 (16) C11—C10—C9 121.5 (2)
C6—C1—C2 119.35 (18) C11—C10—H10A 119.2
C6—C1—S1 121.47 (15) C9—C10—H10A 119.2
C2—C1—S1 119.17 (15) C10—C11—C7 120.0 (2)
C3—C2—C1 120.26 (18) C10—C11—H11A 120.0
C3—C2—H2A 119.9 C7—C11—H11A 120.0
C1—C2—H2A 119.9 O4—N4—O3 122.0 (3)
C2—C3—C4 120.77 (19) O4—N4—C12 120.8 (3)
C2—C3—H3A 119.6 O3—N4—C12 117.2 (3)
C4—C3—H3A 119.6 N4—C12—H12A 109.5
N2—C4—C5 121.67 (19) N4—C12—H12B 109.5
N2—C4—C3 120.14 (19) H12A—C12—H12B 109.5
C5—C4—C3 118.18 (19) N4—C12—H12C 109.5
C6—C5—C4 121.24 (18) H12A—C12—H12C 109.5
C6—C5—H5A 119.4 H12B—C12—H12C 109.5
C4—C5—H5A 119.4
O2—S1—N1—C7 43.60 (19) C3—C4—C5—C6 −3.3 (3)
O1—S1—N1—C7 170.79 (16) C4—C5—C6—C1 1.3 (3)
C1—S1—N1—C7 −75.12 (17) C2—C1—C6—C5 1.2 (3)
O2—S1—C1—C6 −0.9 (2) S1—C1—C6—C5 −178.33 (17)
O1—S1—C1—C6 −126.50 (18) S1—N1—C7—N3 176.39 (14)
N1—S1—C1—C6 121.65 (17) S1—N1—C7—C11 −3.6 (3)
O2—S1—C1—C2 179.59 (16) C8—N3—C7—N1 178.0 (2)
O1—S1—C1—C2 53.96 (18) C8—N3—C7—C11 −2.0 (3)
N1—S1—C1—C2 −57.89 (18) C7—N3—C8—C9 0.8 (4)
C6—C1—C2—C3 −1.6 (3) N3—C8—C9—C10 0.6 (4)
S1—C1—C2—C3 177.94 (16) C8—C9—C10—C11 −0.6 (5)
C1—C2—C3—C4 −0.5 (3) C9—C10—C11—C7 −0.7 (4)
C2—C3—C4—N2 −178.6 (2) N1—C7—C11—C10 −178.1 (2)
C2—C3—C4—C5 2.9 (3) N3—C7—C11—C10 1.9 (3)
N2—C4—C5—C6 178.2 (2)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
N2—H1N2···O2i 0.87 2.10 2.971 (3) 174
N2—H2N2···O1ii 0.87 2.34 3.162 (3) 157
N3—H1N3···N1iii 0.86 (2) 2.09 (2) 2.948 (2) 178 (2)
C8—H8A···O1iii 0.93 2.52 3.160 (3) 126

Symmetry codes: (i) −x, y−1/2, −z+1/2; (ii) −x−1/2, y−1/2, z; (iii) −x, −y+1, −z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HB6660).

References

  1. Bruker (2009). APEX2, SAINT and SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Ghorab, M. M., Ragab, F. A., Alqasoumi, S. I., Alafeefy, A. M. & Aboulmaged, S. A. (2009). Eur. J. Med. Chem 45, 171–178. [DOI] [PubMed]
  3. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  4. Spek, A. L. (2009). Acta Cryst D65, 148–155. [DOI] [PMC free article] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812009865/hb6660sup1.cif

e-68-o1030-sup1.cif (24.3KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812009865/hb6660Isup2.hkl

e-68-o1030-Isup2.hkl (137.5KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812009865/hb6660Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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