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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Mar 17;68(Pt 4):o1090. doi: 10.1107/S1600536812010197

(E)-2-(2-Hy­droxy-5-iodo­benzyl­idene)hydrazinecarboxamide

Rahman Bikas a,*, Samra Nikbakht Sardari b, Seyed Sajjad Hosseini b, Gholam Hossein Shahverdizadeh c, Behrouz Notash d
PMCID: PMC3344044  PMID: 22589953

Abstract

In the title mol­ecule, C8H8IN3O2, there is an intra­molecular O—H⋯N hydrogen bond between the hy­droxy group and the imine N atom, which generates an S(6) ring. In the crystal, the carbonyl O atom accepts two different N—H⋯O hydrogen bonds, which connect mol­ecules with two R 2 2(8) motifs.

Related literature  

For historical background to semicarbazones, see: Arapov et al. (1987); Pickart et al. (1983). For related structures see: Bikas et al. (2010, 2012a ,b ); Monfared et al. (2010a ). For background to the development of hydrazide derivatives for biological evaluation, see: Carvalho et al. (2008). For catalytic applications of aroylhydrazones, see: Monfared et al. (2010b ). For a similiar structure, see: Abboud et al. (1995).graphic file with name e-68-o1090-scheme1.jpg

Experimental  

Crystal data  

  • C8H8IN3O2

  • M r = 305.07

  • Monoclinic, Inline graphic

  • a = 9.1066 (18) Å

  • b = 7.6277 (15) Å

  • c = 14.375 (3) Å

  • β = 95.31 (3)°

  • V = 994.3 (3) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 3.20 mm−1

  • T = 120 K

  • 0.25 × 0.13 × 0.12 mm

Data collection  

  • Stoe IPDS 2T diffractometer

  • Absorption correction: numerical (shape of crystal determined optically; X-RED32 and X-SHAPE, Stoe & Cie, 2005) T min = 0.502, T max = 0.700

  • 10438 measured reflections

  • 2686 independent reflections

  • 2362 reflections with I > 2σ(I)

  • R int = 0.041

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.029

  • wR(F 2) = 0.056

  • S = 1.13

  • 2686 reflections

  • 143 parameters

  • 1 restraint

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.75 e Å−3

  • Δρmin = −0.71 e Å−3

Data collection: X-AREA (Stoe & Cie, 2005); cell refinement: X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812010197/vm2154sup1.cif

e-68-o1090-sup1.cif (15KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812010197/vm2154Isup2.hkl

e-68-o1090-Isup2.hkl (131.9KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812010197/vm2154Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N3—H3B⋯O2i 0.81 (4) 2.13 (4) 2.920 (3) 163 (3)
N2—H2⋯O2ii 0.80 (4) 2.00 (4) 2.800 (3) 176 (3)
O1—H1⋯N1 0.84 (2) 1.88 (3) 2.628 (3) 147 (4)

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

The authors are grateful to the Islamic Azad University (Tabriz Branch) and the Islamic Azad University (Ardabil Branch) for financial support.

supplementary crystallographic information

Comment

Semicarbazone compounds are derived from the condensation of carbonyl compounds and semicarbazides. This class are important tridentate O, N, O-donor ligands. As biologically active compounds, semicarbazones find application in the treatment of diseases such as anti-tumor, tuberculosis, leprosy and mental disorder. Furthermore, semicarbazone have wide spread applications in fields such as coordination chemistry, bioinorganic chemistry, and in magnetic, electronic, nonlinear optically active and fluorescent compounds. Also semicarbazone metal complexes seem to be a good candidate for catalytic oxidation studies because of their resist to oxidation (Monfared et al., 2010b).

As part of our studies on the synthesis and characterization of hydrazone derivatives (Bikas et al., 2010; Bikas et al., 2012a,b), we report here the crystal structure of (E)-2-(2-hydroxy-5-iodobenzylidene)hydrazinecarboxamide (Fig.1). Bond distances are in the normal range for similar hydrazone compounds (Abboud et al., 1995). The molecule is approximately planar, with an r.m.s. deviation from the mean plane through all 14 non-H atoms of 0.181 (2) Å. The dihedral angle between the phenyl ring plane and the least-squares plane through the N3—C8—O2—N2 unit is 14.00 (13)°. In the crystal structure of the title compound, the molecule adopts an E configuration with respect to the C7=N1 bond. In the crystal structure of the title compound, there is an intramolecular O—H···N hydrogen bonding between the hydroxyl group and imine nitrogen atom. The carbonyl group forms two different intermolecular N—H···O hydrogen bonds parallel to ac- plane which connects molecules with two R22(8) motifs (Table 1, Fig. 2).

Experimental

For preparing the title compound a methanol (10 ml) solution of 2-hydroxy-5-iodobenzaldehyde (1.5 mmol) was added drop-wise to a methanol solution (10 ml) of semicarbazide (1.5 mmol), and the mixture was refluxed for 3 h. The solution was then evaporated on a steam bath to 5 ml and cooled to room temperature. The light-yellow precipitates of the title compound were separated and filtered off, washed with 3 ml of cooled methanol and then dried in air. Colorless crystals were obtained from its methanol solution by slow solvent evaporation. Yield: 92%. IR (cm-1): 3464 (m, O—H), 3176 (m, broad, N—H), 1699 (vs, C=O), 1594 (s, C=N), 1463 (s), 1340 (m), 1259 (vs), 1187 (s), 1072 (m), 942 (vs), 893 (m), 818 (m), 769 (vs), 682 (m), 613 (m), 572 (vs), 517 (s), 522 (m), 472 (vs), 427 (vs).

Refinement

The hydrogen atoms of the N—H and O—H groups were found in a difference Fourier map and refined isotropically with a distance restraint to 0.84 Å for the O—H group. All other H atoms were positioned geometrically and refined as riding atoms with C—H = 0.95 Å, Uiso(H) = 1.2Ueq(C) aromatic and imine H atoms.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound. Displacement ellipsoids are drawn at the 50% probability level.

Fig. 2.

Fig. 2.

The packing diagram of the title compound showing intermolecular hydrogen bonds as blue dashed lines.

Crystal data

C8H8IN3O2 F(000) = 584
Mr = 305.07 Dx = 2.038 Mg m3
Monoclinic, P2/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2yc Cell parameters from 2686 reflections
a = 9.1066 (18) Å θ = 2.7–29.2°
b = 7.6277 (15) Å µ = 3.20 mm1
c = 14.375 (3) Å T = 120 K
β = 95.31 (3)° Block, colorless
V = 994.3 (3) Å3 0.25 × 0.13 × 0.12 mm
Z = 4

Data collection

Stoe IPDS 2T diffractometer 2686 independent reflections
Radiation source: fine-focus sealed tube 2362 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.041
Detector resolution: 0.15 mm pixels mm-1 θmax = 29.2°, θmin = 2.7°
rotation method scans h = −12→12
Absorption correction: numerical (shape of crystal determined optically; X-RED32 and X-SHAPE, Stoe & Cie, 2005) k = −10→10
Tmin = 0.502, Tmax = 0.700 l = −18→19
10438 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.029 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.056 H atoms treated by a mixture of independent and constrained refinement
S = 1.13 w = 1/[σ2(Fo2) + (0.0208P)2 + 1.0932P] where P = (Fo2 + 2Fc2)/3
2686 reflections (Δ/σ)max = 0.001
143 parameters Δρmax = 0.75 e Å3
1 restraint Δρmin = −0.71 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
I1 0.71642 (2) 0.52615 (2) 1.210107 (13) 0.02620 (6)
O2 1.52011 (18) 1.0591 (2) 0.88088 (11) 0.0160 (3)
N2 1.3349 (2) 0.9116 (3) 0.93933 (14) 0.0149 (4)
C8 1.3955 (2) 0.9896 (3) 0.86612 (16) 0.0137 (4)
N3 1.3205 (2) 0.9864 (3) 0.78198 (15) 0.0166 (4)
N1 1.1902 (2) 0.8602 (3) 0.93061 (14) 0.0134 (4)
O1 0.9242 (2) 0.8354 (3) 0.84348 (13) 0.0217 (4)
C1 0.9856 (3) 0.7452 (3) 1.00333 (17) 0.0139 (4)
C2 0.8840 (3) 0.7661 (3) 0.92413 (17) 0.0150 (4)
C7 1.1398 (3) 0.7979 (3) 1.00415 (16) 0.0137 (4)
H7 1.2036 0.7860 1.0599 0.016*
C6 0.9357 (3) 0.6755 (3) 1.08517 (17) 0.0165 (5)
H6 1.0028 0.6609 1.1393 0.020*
C4 0.6899 (3) 0.6494 (3) 1.00927 (19) 0.0191 (5)
H4 0.5895 0.6172 1.0115 0.023*
C3 0.7373 (3) 0.7178 (3) 0.92780 (18) 0.0187 (5)
H3 0.6691 0.7319 0.8742 0.022*
C5 0.7893 (3) 0.6278 (3) 1.08752 (18) 0.0173 (5)
H2 1.380 (4) 0.917 (4) 0.990 (3) 0.022 (8)*
H3A 1.244 (4) 0.929 (5) 0.773 (3) 0.029 (9)*
H3B 1.359 (4) 1.028 (5) 0.738 (3) 0.028 (9)*
H1 1.016 (2) 0.849 (5) 0.849 (3) 0.037 (10)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
I1 0.03341 (10) 0.02256 (9) 0.02507 (9) −0.00405 (7) 0.01569 (7) 0.00293 (7)
O2 0.0139 (7) 0.0241 (10) 0.0102 (8) −0.0040 (6) 0.0015 (6) −0.0006 (6)
N2 0.0121 (9) 0.0243 (10) 0.0081 (9) −0.0052 (8) 0.0003 (7) 0.0002 (8)
C8 0.0143 (9) 0.0174 (12) 0.0095 (9) 0.0005 (8) 0.0019 (8) −0.0004 (8)
N3 0.0153 (9) 0.0243 (11) 0.0101 (9) −0.0040 (8) 0.0007 (7) 0.0005 (8)
N1 0.0112 (9) 0.0159 (9) 0.0132 (9) −0.0012 (7) 0.0011 (7) −0.0023 (7)
O1 0.0150 (9) 0.0375 (11) 0.0121 (8) −0.0015 (7) −0.0009 (7) 0.0058 (7)
C1 0.0149 (11) 0.0130 (12) 0.0141 (10) −0.0002 (8) 0.0032 (8) −0.0014 (8)
C2 0.0147 (11) 0.0174 (11) 0.0131 (11) −0.0005 (8) 0.0020 (8) −0.0005 (9)
C7 0.0130 (10) 0.0171 (11) 0.0109 (10) −0.0006 (8) 0.0010 (8) −0.0011 (8)
C6 0.0176 (11) 0.0180 (12) 0.0140 (11) 0.0003 (9) 0.0030 (9) 0.0010 (9)
C4 0.0147 (11) 0.0188 (12) 0.0249 (13) −0.0037 (9) 0.0070 (9) −0.0054 (10)
C3 0.0149 (11) 0.0231 (13) 0.0181 (12) 0.0001 (9) 0.0017 (9) −0.0031 (9)
C5 0.0204 (11) 0.0137 (11) 0.0194 (12) −0.0014 (8) 0.0106 (9) 0.0005 (9)

Geometric parameters (Å, º)

I1—C5 2.089 (2) C1—C6 1.404 (3)
O2—C8 1.253 (3) C1—C2 1.408 (3)
N2—C8 1.369 (3) C1—C7 1.460 (3)
N2—N1 1.369 (3) C2—C3 1.391 (3)
N2—H2 0.80 (4) C7—H7 0.9500
C8—N3 1.333 (3) C6—C5 1.385 (3)
N3—H3A 0.82 (4) C6—H6 0.9500
N3—H3B 0.81 (4) C4—C5 1.387 (4)
N1—C7 1.282 (3) C4—C3 1.387 (4)
O1—C2 1.355 (3) C4—H4 0.9500
O1—H1 0.841 (18) C3—H3 0.9500
C8—N2—N1 120.5 (2) C3—C2—C1 120.0 (2)
C8—N2—H2 118 (2) N1—C7—C1 120.9 (2)
N1—N2—H2 120 (2) N1—C7—H7 119.6
O2—C8—N3 122.8 (2) C1—C7—H7 119.6
O2—C8—N2 118.5 (2) C5—C6—C1 120.4 (2)
N3—C8—N2 118.7 (2) C5—C6—H6 119.8
C8—N3—H3A 121 (3) C1—C6—H6 119.8
C8—N3—H3B 118 (3) C5—C4—C3 119.9 (2)
H3A—N3—H3B 120 (4) C5—C4—H4 120.0
C7—N1—N2 116.5 (2) C3—C4—H4 120.0
C2—O1—H1 108 (3) C4—C3—C2 120.4 (2)
C6—C1—C2 118.8 (2) C4—C3—H3 119.8
C6—C1—C7 118.9 (2) C2—C3—H3 119.8
C2—C1—C7 122.3 (2) C6—C5—C4 120.4 (2)
O1—C2—C3 118.2 (2) C6—C5—I1 120.0 (2)
O1—C2—C1 121.8 (2) C4—C5—I1 119.59 (17)
N1—N2—C8—O2 169.1 (2) C2—C1—C6—C5 0.2 (4)
N1—N2—C8—N3 −11.9 (3) C7—C1—C6—C5 178.5 (2)
C8—N2—N1—C7 −175.9 (2) C5—C4—C3—C2 −0.3 (4)
C6—C1—C2—O1 178.8 (2) O1—C2—C3—C4 −178.8 (2)
C7—C1—C2—O1 0.6 (4) C1—C2—C3—C4 0.1 (4)
C6—C1—C2—C3 −0.1 (4) C1—C6—C5—C4 −0.4 (4)
C7—C1—C2—C3 −178.3 (2) C1—C6—C5—I1 −179.51 (18)
N2—N1—C7—C1 177.8 (2) C3—C4—C5—C6 0.5 (4)
C6—C1—C7—N1 179.1 (2) C3—C4—C5—I1 179.59 (19)
C2—C1—C7—N1 −2.6 (4)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
N3—H3B···O2i 0.81 (4) 2.13 (4) 2.920 (3) 163 (3)
N2—H2···O2ii 0.80 (4) 2.00 (4) 2.800 (3) 176 (3)
O1—H1···N1 0.84 (2) 1.88 (3) 2.628 (3) 147 (4)

Symmetry codes: (i) −x+3, y, −z+3/2; (ii) −x+3, −y+2, −z+2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: VM2154).

References

  1. Abboud, K. A., Summers, S. P. & Palenik, G. J. (1995). Acta Cryst. C51, 1707–1709.
  2. Arapov, O. V., Alferva, O. F., Levocheskaya, E. I. & Krasilnikov, I. (1987). Radiobiologiya, 27, 843–846. [PubMed]
  3. Bikas, R., Anarjan, P. M., Ng, S. W. & Tiekink, E. R. T. (2012a). Acta Cryst. E68, o193. [DOI] [PMC free article] [PubMed]
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  13. Stoe & Cie (2005). X-AREA, X-RED32 and X-SHAPE Stoe & Cie, Darmstadt, Germany.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812010197/vm2154sup1.cif

e-68-o1090-sup1.cif (15KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812010197/vm2154Isup2.hkl

e-68-o1090-Isup2.hkl (131.9KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812010197/vm2154Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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