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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Mar 21;68(Pt 4):o1129. doi: 10.1107/S1600536812010914

N-(2,2-Dimethyl­propano­yl)-N′-(2-meth­oxy­phen­yl)thio­urea

Maisara A Kadir a, Bohari M Yamin b, M Sukeri M Yusof a,*
PMCID: PMC3344075  PMID: 22589984

Abstract

In the title compound, C13H18N2O2S, the carbonyl­thio­urea fragment is nearly planar with an r.m.s. deviation of 0.0096 Å. The dihedral angle between carbonyl­thio­urea group and the benzene ring is 19.16 (16)°. There are two intra­molecular N—H⋯O hydrogen bonds, which lead to two pseudo-six-membered rings. Weak intra­molecular C—H⋯S hydrogen bonding also occurs.

Related literature  

For related structures, see: Saeed & Flörke (2007); Yusof et al. (2008); Shoukat et al. (2007). For standard bond lengths, see: Allen et al. (1987).graphic file with name e-68-o1129-scheme1.jpg

Experimental  

Crystal data  

  • C13H18N2O2S

  • M r = 266.35

  • Orthorhombic, Inline graphic

  • a = 5.9181 (10) Å

  • b = 13.492 (2) Å

  • c = 17.592 (3) Å

  • V = 1404.7 (4) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.23 mm−1

  • T = 273 K

  • 0.50 × 0.14 × 0.09 mm

Data collection  

  • Bruker SMART APEX CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2000) T min = 0.895, T max = 0.980

  • 8711 measured reflections

  • 2763 independent reflections

  • 2227 reflections with I > 2σ(I)

  • R int = 0.045

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.068

  • wR(F 2) = 0.147

  • S = 1.13

  • 2763 reflections

  • 163 parameters

  • H-atom parameters constrained

  • Δρmax = 0.32 e Å−3

  • Δρmin = −0.18 e Å−3

  • Absolute structure: Flack (1983), 1141

  • Flack parameter: 0.63 (15)

Data collection: SMART (Bruker, 2000); cell refinement: SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PARST (Nardelli, 1995).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812010914/bq2346sup1.cif

e-68-o1129-sup1.cif (22.7KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812010914/bq2346Isup2.hkl

e-68-o1129-Isup2.hkl (135.7KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812010914/bq2346Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N2—H2A⋯O1 0.86 1.89 2.619 (4) 142
N2—H2A⋯O2 0.86 2.17 2.575 (4) 109
C12—H12A⋯S1 0.93 2.62 3.235 (4) 124

Acknowledgments

The authors wish to thank both Universiti Malaysia Terengganu and Universiti Kebangsaan Malaysia for the research facilities and the Ministry of Higher Education Malaysia for the research grant FRGS 59178.

supplementary crystallographic information

Comment

The title compound is analogous to the previously reported, 1-(2-Nitrophenyl)-3-pivaloylthiourea (Saeed and Flörke, 2007) except that the nitro group is replace with methoxy group (Fig. 1). The bond lengths are in normal ranges (Allen et al., 1987) and comparable with other similar molecule reported (Yusof et al. 2008; Shoukat et al. 2007).

The carbonylthiourea (S1/N1/N2/O1/C4–C7) and phenyl fragments are essentially planar, with rms deviations of 0.0096 Å and 0.0064 Å, respectively. These two fragments inclined at each other at an angle of 19.16(0.16)°. There are two intramolecular hydrogen bonds, N2—H2A···O1 and N2—H2A···O2 leading to two pseudo-six membered rings. Weak C-H···S intramolecular H-bonding is also exist. There is no intermolecular hydrogen bond in the crystal structure.

Experimental

To a stirring acetone solution (75 ml) of pivaloyl chloride (5.0 g, 0.04 mol) and ammonium thiocyanate (3.15 g, 0.04 mol), 2-methoxyaniline (0.49 g, 0.04 mol) in 40 ml of acetone was added dropwise. The solution mixture was refluxed for 1 h. The resulting solution was poured into a beaker containing some ice blocks. The white precipitate was filtered off and washed with distilled water and cold ethanol before being dried under vacuum. Good quality crystals were obtained by recrystallization from DMF.

Refinement

H atoms on C were positioned geometrically with C—H 0.93, 0.96 Å, for aromatic and methyl H atoms, respectively, and constrained to ride on their parent atoms with Uiso(H)= xUeq(C) where x=1.5 for methyl H and x=1.2 for aromatic H atoms. The H atom attached to oxygen atoms were located from the Fourier difference map and refined isotropically.

Figures

Fig. 1.

Fig. 1.

The molecular structure of (I), with displacement ellipsoids drawn at the 50% probability level. Dashed lines show H-bondings.

Crystal data

C13H18N2O2S F(000) = 568
Mr = 266.35 Dx = 1.259 Mg m3
Orthorhombic, P212121 Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2ab Cell parameters from 770 reflections
a = 5.9181 (10) Å θ = 1.9–26.0°
b = 13.492 (2) Å µ = 0.23 mm1
c = 17.592 (3) Å T = 273 K
V = 1404.7 (4) Å3 Slab, colourless
Z = 4 0.50 × 0.14 × 0.09 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer 2763 independent reflections
Radiation source: fine-focus sealed tube 2227 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.045
Detector resolution: 83.66 pixels mm-1 θmax = 26.0°, θmin = 1.9°
ω scan h = −7→6
Absorption correction: multi-scan (SADABS; Bruker, 2000) k = −16→16
Tmin = 0.895, Tmax = 0.980 l = −20→21
8711 measured reflections

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.068 H-atom parameters constrained
wR(F2) = 0.147 w = 1/[σ2(Fo2) + (0.0655P)2 + 0.2181P] where P = (Fo2 + 2Fc2)/3
S = 1.13 (Δ/σ)max < 0.001
2763 reflections Δρmax = 0.32 e Å3
163 parameters Δρmin = −0.18 e Å3
0 restraints Absolute structure: Flack (1983), 1141 Friedel pairs
Primary atom site location: structure-invariant direct methods Flack parameter: 0.63 (15)

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
S1 0.1312 (2) 0.79180 (7) 0.57763 (7) 0.0693 (4)
O1 0.3640 (5) 0.47260 (17) 0.56305 (13) 0.0559 (7)
O2 0.7537 (5) 0.5571 (2) 0.67865 (15) 0.0662 (8)
C6 0.2391 (6) 0.6781 (2) 0.58348 (19) 0.0442 (8)
N2 0.3935 (5) 0.6446 (2) 0.63138 (15) 0.0453 (7)
H2A 0.4306 0.5836 0.6243 0.054*
N1 0.1602 (5) 0.60835 (18) 0.53095 (15) 0.0427 (7)
H1A 0.0573 0.6290 0.5003 0.051*
C5 0.2250 (6) 0.5112 (2) 0.52178 (18) 0.0384 (8)
C8 0.7025 (7) 0.6429 (3) 0.71748 (19) 0.0474 (9)
C9 0.8272 (8) 0.6805 (3) 0.7766 (2) 0.0623 (11)
H9A 0.9588 0.6489 0.7924 0.075*
C4 0.1096 (6) 0.4544 (2) 0.45732 (18) 0.0445 (8)
C7 0.5083 (7) 0.6910 (2) 0.69201 (17) 0.0434 (9)
C3 0.2134 (8) 0.3508 (3) 0.4531 (2) 0.0682 (12)
H3A 0.1901 0.3171 0.5005 0.102*
H3B 0.3724 0.3562 0.4432 0.102*
H3C 0.1427 0.3140 0.4128 0.102*
C2 0.1488 (9) 0.5089 (3) 0.3823 (2) 0.0726 (13)
H2B 0.0831 0.5738 0.3850 0.109*
H2C 0.0798 0.4724 0.3416 0.109*
H2D 0.3082 0.5146 0.3731 0.109*
C12 0.4381 (8) 0.7757 (3) 0.7293 (2) 0.0599 (12)
H12A 0.3061 0.8075 0.7142 0.072*
C11 0.5629 (10) 0.8133 (3) 0.7888 (2) 0.0731 (15)
H11A 0.5165 0.8711 0.8129 0.088*
C10 0.7544 (9) 0.7660 (3) 0.8125 (2) 0.0714 (14)
H10A 0.8365 0.7915 0.8532 0.086*
C13 0.9241 (8) 0.4949 (3) 0.7089 (2) 0.0744 (13)
H13A 0.9422 0.4379 0.6769 0.112*
H13B 0.8817 0.4740 0.7591 0.112*
H13C 1.0642 0.5307 0.7113 0.112*
C1 −0.1417 (7) 0.4454 (3) 0.4742 (3) 0.0734 (12)
H1B −0.2072 0.5103 0.4777 0.110*
H1C −0.1626 0.4110 0.5215 0.110*
H1D −0.2141 0.4090 0.4341 0.110*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S1 0.0848 (8) 0.0424 (5) 0.0806 (7) 0.0145 (6) −0.0263 (7) −0.0102 (5)
O1 0.0650 (17) 0.0465 (13) 0.0562 (14) 0.0105 (13) −0.0175 (14) −0.0061 (11)
O2 0.068 (2) 0.0701 (18) 0.0609 (15) 0.0127 (16) −0.0192 (15) −0.0080 (14)
C6 0.045 (2) 0.0429 (18) 0.0448 (18) −0.0036 (16) 0.0009 (18) 0.0016 (15)
N2 0.0535 (19) 0.0360 (14) 0.0465 (16) 0.0025 (14) −0.0089 (15) −0.0053 (12)
N1 0.0445 (17) 0.0396 (15) 0.0440 (15) 0.0033 (13) −0.0109 (14) −0.0057 (12)
C5 0.0366 (19) 0.0403 (17) 0.0385 (17) −0.0044 (15) 0.0033 (15) 0.0015 (14)
C8 0.054 (2) 0.048 (2) 0.0405 (18) −0.0111 (18) −0.0028 (17) 0.0069 (16)
C9 0.061 (3) 0.074 (3) 0.051 (2) −0.020 (2) −0.010 (2) 0.008 (2)
C4 0.039 (2) 0.0484 (19) 0.0462 (19) −0.0020 (17) 0.0003 (16) −0.0068 (15)
C7 0.057 (2) 0.0386 (18) 0.0351 (18) −0.0119 (18) −0.0021 (17) 0.0025 (14)
C3 0.074 (3) 0.057 (2) 0.074 (3) 0.002 (2) −0.016 (2) −0.027 (2)
C2 0.100 (4) 0.078 (3) 0.039 (2) −0.011 (3) −0.004 (2) −0.0070 (19)
C12 0.085 (3) 0.050 (2) 0.045 (2) −0.007 (2) −0.003 (2) −0.0055 (17)
C11 0.119 (5) 0.050 (2) 0.050 (2) −0.015 (3) −0.002 (3) −0.0072 (18)
C10 0.100 (4) 0.068 (3) 0.046 (2) −0.041 (3) −0.016 (3) 0.000 (2)
C13 0.063 (3) 0.088 (3) 0.073 (3) 0.012 (2) −0.007 (2) 0.008 (2)
C1 0.051 (3) 0.080 (3) 0.090 (3) −0.014 (2) −0.002 (2) −0.021 (2)

Geometric parameters (Å, º)

S1—C6 1.665 (3) C7—C12 1.382 (5)
O1—C5 1.215 (4) C3—H3A 0.9600
O2—C8 1.378 (5) C3—H3B 0.9600
O2—C13 1.416 (5) C3—H3C 0.9600
C6—N2 1.323 (4) C2—H2B 0.9600
C6—N1 1.399 (4) C2—H2C 0.9600
N2—C7 1.411 (4) C2—H2D 0.9600
N2—H2A 0.8600 C12—C11 1.378 (6)
N1—C5 1.375 (4) C12—H12A 0.9300
N1—H1A 0.8600 C11—C10 1.366 (7)
C5—C4 1.530 (5) C11—H11A 0.9300
C8—C9 1.373 (5) C10—H10A 0.9300
C8—C7 1.394 (5) C13—H13A 0.9600
C9—C10 1.385 (6) C13—H13B 0.9600
C9—H9A 0.9300 C13—H13C 0.9600
C4—C1 1.522 (5) C1—H1B 0.9600
C4—C2 1.529 (5) C1—H1C 0.9600
C4—C3 1.529 (5) C1—H1D 0.9600
C8—O2—C13 117.9 (3) C4—C3—H3C 109.5
N2—C6—N1 114.9 (3) H3A—C3—H3C 109.5
N2—C6—S1 128.3 (3) H3B—C3—H3C 109.5
N1—C6—S1 116.8 (3) C4—C2—H2B 109.5
C6—N2—C7 131.5 (3) C4—C2—H2C 109.5
C6—N2—H2A 114.3 H2B—C2—H2C 109.5
C7—N2—H2A 114.3 C4—C2—H2D 109.5
C5—N1—C6 128.7 (3) H2B—C2—H2D 109.5
C5—N1—H1A 115.7 H2C—C2—H2D 109.5
C6—N1—H1A 115.7 C11—C12—C7 120.2 (4)
O1—C5—N1 121.9 (3) C11—C12—H12A 119.9
O1—C5—C4 122.0 (3) C7—C12—H12A 119.9
N1—C5—C4 116.1 (3) C10—C11—C12 120.4 (4)
C9—C8—O2 124.6 (4) C10—C11—H11A 119.8
C9—C8—C7 121.0 (4) C12—C11—H11A 119.8
O2—C8—C7 114.4 (3) C11—C10—C9 120.5 (4)
C8—C9—C10 119.1 (4) C11—C10—H10A 119.7
C8—C9—H9A 120.5 C9—C10—H10A 119.7
C10—C9—H9A 120.5 O2—C13—H13A 109.5
C1—C4—C2 110.8 (4) O2—C13—H13B 109.5
C1—C4—C3 109.2 (3) H13A—C13—H13B 109.5
C2—C4—C3 109.6 (3) O2—C13—H13C 109.5
C1—C4—C5 109.4 (3) H13A—C13—H13C 109.5
C2—C4—C5 109.4 (3) H13B—C13—H13C 109.5
C3—C4—C5 108.4 (3) C4—C1—H1B 109.5
C12—C7—C8 118.7 (3) C4—C1—H1C 109.5
C12—C7—N2 125.5 (4) H1B—C1—H1C 109.5
C8—C7—N2 115.7 (3) C4—C1—H1D 109.5
C4—C3—H3A 109.5 H1B—C1—H1D 109.5
C4—C3—H3B 109.5 H1C—C1—H1D 109.5
H3A—C3—H3B 109.5
N1—C6—N2—C7 −178.8 (3) O1—C5—C4—C3 −4.2 (5)
S1—C6—N2—C7 2.0 (6) N1—C5—C4—C3 176.6 (3)
N2—C6—N1—C5 −1.5 (5) C9—C8—C7—C12 −2.3 (5)
S1—C6—N1—C5 177.9 (3) O2—C8—C7—C12 177.6 (3)
C6—N1—C5—O1 2.2 (5) C9—C8—C7—N2 −179.4 (3)
C6—N1—C5—C4 −178.6 (3) O2—C8—C7—N2 0.5 (4)
C13—O2—C8—C9 10.6 (5) C6—N2—C7—C12 19.9 (6)
C13—O2—C8—C7 −169.3 (3) C6—N2—C7—C8 −163.3 (3)
O2—C8—C9—C10 −178.1 (3) C8—C7—C12—C11 2.2 (6)
C7—C8—C9—C10 1.7 (5) N2—C7—C12—C11 178.9 (3)
O1—C5—C4—C1 114.7 (4) C7—C12—C11—C10 −1.4 (6)
N1—C5—C4—C1 −64.5 (4) C12—C11—C10—C9 0.8 (6)
O1—C5—C4—C2 −123.7 (4) C8—C9—C10—C11 −1.0 (6)
N1—C5—C4—C2 57.1 (4)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
N2—H2A···O1 0.86 1.89 2.619 (4) 142
N2—H2A···O2 0.86 2.17 2.575 (4) 109
C12—H12A···S1 0.93 2.62 3.235 (4) 124

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BQ2346).

References

  1. Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19.
  2. Bruker (2000). SADABS, SMART and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Flack, H. D. (1983). Acta Cryst. A39, 876–881.
  4. Nardelli, M. (1995). J. Appl. Cryst. 28, 659.
  5. Saeed, A. & Flörke, U. (2007). Acta Cryst. E63, o4259.
  6. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  7. Shoukat, N., Rauf, M. K., Bolte, M. & Badshah, A. (2007). Acta Cryst. E63, o3207.
  8. Yusof, M. S. M., Muharam, S. H., Kassim, M. B. & Yamin, B. M. (2008). Acta Cryst. E64, o1137. [DOI] [PMC free article] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812010914/bq2346sup1.cif

e-68-o1129-sup1.cif (22.7KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812010914/bq2346Isup2.hkl

e-68-o1129-Isup2.hkl (135.7KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812010914/bq2346Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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