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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Mar 24;68(Pt 4):o1151. doi: 10.1107/S1600536812010306

1-(2-Methyl­benz­yl)-1H-indole-3-carbaldehyde

Yang Wu a, Wen Ren b, Qiang Wang b, Gu He c,*
PMCID: PMC3344094  PMID: 22606097

Abstract

In the title compound, C17H15NO, the benzene ring and the indole system are almost perpendicular, making a dihedral angle of 87.82 (6)°. The crystal packing is stabilized by C—H⋯O and π–π stacking inter­actions with centroid–centroid distances of 3.592 (4) Å between the pyrrole and the benzene rings in the indole systems of neighboring mol­ecules.

Related literature  

For general background to the chemistry and anti-inflammatory activity of carboxylic acid derivatives, see: Andreani et al. (1994).graphic file with name e-68-o1151-scheme1.jpg

Experimental  

Crystal data  

  • C17H15NO

  • M r = 249.30

  • Monoclinic, Inline graphic

  • a = 10.5251 (3) Å

  • b = 15.4352 (5) Å

  • c = 8.2335 (2) Å

  • β = 99.214 (3)°

  • V = 1320.33 (7) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.08 mm−1

  • T = 293 K

  • 0.28 × 0.25 × 0.20 mm

Data collection  

  • Agilent Xcalibur Eos diffractometer

  • Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011) T min = 0.981, T max = 1.000

  • 5468 measured reflections

  • 2699 independent reflections

  • 1928 reflections with I > 2σ(I)

  • R int = 0.016

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.047

  • wR(F 2) = 0.117

  • S = 1.04

  • 2699 reflections

  • 173 parameters

  • H-atom parameters constrained

  • Δρmax = 0.13 e Å−3

  • Δρmin = −0.17 e Å−3

Data collection: CrysAlis PRO (Agilent, 2011); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: OLEX2 (Dolomanov, 2009); software used to prepare material for publication: OLEX2.

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812010306/bt5840sup1.cif

e-68-o1151-sup1.cif (21.4KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812010306/bt5840Isup2.hkl

e-68-o1151-Isup2.hkl (132.6KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812010306/bt5840Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C16—H16⋯O1i 0.93 2.56 3.418 (2) 154

Symmetry code: (i) Inline graphic.

Acknowledgments

We thank the Analytical and Testing Center of Sichuan University for the X-ray measurements.

supplementary crystallographic information

Comment

1-(2-Methyl-benzyl)-1H-indole-3-carbaldehyde is of great importance owing to its wide biological properties (Andreani et al., 1994). The title compound is one of the key intermediates in our synthetic investigations of antibacterial drugs. We report here its crystal structure.

In the title compound, C17H15NO, as shown in Fig 1, the benzene ring with the methyl group in ortho position and the indole system are almost perpendicular, making dihedral angle of 87.82 (6)°. A combination of intermolecular C-H···O and π–π packing interaction plays an important role in the connection of neighbouring molecules. The centroid-centroid distance between the pyrrole ring and the benzene ring in the indole system of the neighbouring molecule is 3.592 (4) Å (symmetry operator: -x, -y, -z).

Experimental

1H-indole-3-carbaldehyde(14 mmol) was dissolved in dry DMF(25 ml)and treated portionwise,under stirring, with 20 mmol NaH. The mixture was stirred at room temperature for 10 min and treated with 20 mmol of 1-chloromethyl-2-methyl-benzene. After 1 h at 90°C under stirring, the mixture was poured onto ice. The resulting precipitate was collected by filtration and crystallized from ethanol with a yield of 70%. Crystals suitable for X-ray analysis were obtained by slow evaporation from a solution of dichloromethane.

Refinement

All H atoms were positioned geometrically and refined using a riding model, with C—H = 0.93–0.97 Å and with Uiso(H) = 1.2 or 1.5Ueq(C) for methyl H atoms.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound, with displacement ellipsoids drawn at the 30% probability level.

Fig. 2.

Fig. 2.

A packing diagram of the title compound.

Crystal data

C17H15NO F(000) = 528
Mr = 249.30 Dx = 1.254 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.7107 Å
a = 10.5251 (3) Å Cell parameters from 1937 reflections
b = 15.4352 (5) Å θ = 3.2–29.1°
c = 8.2335 (2) Å µ = 0.08 mm1
β = 99.214 (3)° T = 293 K
V = 1320.33 (7) Å3 Block, colorless
Z = 4 0.28 × 0.25 × 0.20 mm

Data collection

Agilent Xcalibur Eos diffractometer 2699 independent reflections
Radiation source: fine-focus sealed tube 1928 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.016
Detector resolution: 16.0874 pixels mm-1 θmax = 26.4°, θmin = 3.2°
ω scans h = −11→13
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011) k = −11→19
Tmin = 0.981, Tmax = 1.000 l = −10→4
5468 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.117 H-atom parameters constrained
S = 1.04 w = 1/[σ2(Fo2) + (0.0449P)2 + 0.2065P] where P = (Fo2 + 2Fc2)/3
2699 reflections (Δ/σ)max < 0.001
173 parameters Δρmax = 0.13 e Å3
0 restraints Δρmin = −0.17 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.02058 (15) 0.14964 (11) −0.33644 (17) 0.0895 (5)
N1 0.21128 (12) 0.01830 (9) 0.14071 (15) 0.0439 (3)
C1 0.18887 (13) −0.04418 (11) 0.01839 (19) 0.0404 (4)
C2 0.13295 (13) −0.00278 (11) −0.12762 (19) 0.0415 (4)
C3 0.12187 (14) 0.08699 (11) −0.0886 (2) 0.0457 (4)
C4 0.17018 (15) 0.09542 (11) 0.0760 (2) 0.0475 (4)
H4 0.1739 0.1472 0.1344 0.057*
C5 0.10025 (15) −0.05289 (13) −0.2699 (2) 0.0506 (4)
H5 0.0639 −0.0273 −0.3687 0.061*
C6 0.12281 (16) −0.14068 (13) −0.2611 (2) 0.0573 (5)
H6 0.1010 −0.1744 −0.3549 0.069*
C7 0.17749 (16) −0.17975 (12) −0.1149 (2) 0.0567 (5)
H7 0.1910 −0.2393 −0.1126 0.068*
C8 0.21221 (15) −0.13246 (11) 0.0266 (2) 0.0503 (4)
H8 0.2499 −0.1587 0.1242 0.060*
C9 0.06793 (18) 0.15646 (14) −0.1918 (3) 0.0642 (5)
H9 0.0690 0.2113 −0.1449 0.077*
C10 0.26384 (17) 0.00142 (12) 0.31387 (19) 0.0536 (5)
H10A 0.3153 −0.0510 0.3210 0.064*
H10B 0.1933 −0.0082 0.3745 0.064*
C11 0.34564 (15) 0.07493 (11) 0.39236 (19) 0.0455 (4)
C12 0.46514 (15) 0.09284 (11) 0.34816 (19) 0.0448 (4)
C13 0.53745 (17) 0.15965 (12) 0.4283 (2) 0.0565 (5)
H13 0.6176 0.1721 0.4002 0.068*
C14 0.4941 (2) 0.20792 (14) 0.5479 (2) 0.0679 (6)
H14 0.5445 0.2525 0.5997 0.082*
C15 0.3765 (2) 0.19041 (15) 0.5909 (3) 0.0744 (6)
H15 0.3467 0.2228 0.6722 0.089*
C16 0.30237 (18) 0.12415 (14) 0.5125 (2) 0.0637 (5)
H16 0.2221 0.1125 0.5411 0.076*
C17 0.51550 (17) 0.04237 (15) 0.2160 (2) 0.0666 (6)
H17A 0.5075 −0.0185 0.2360 0.100*
H17B 0.6044 0.0565 0.2168 0.100*
H17C 0.4667 0.0568 0.1108 0.100*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.1027 (11) 0.1071 (13) 0.0562 (9) 0.0489 (10) 0.0050 (8) 0.0189 (9)
N1 0.0436 (7) 0.0468 (8) 0.0395 (7) −0.0044 (6) 0.0014 (6) 0.0004 (7)
C1 0.0344 (8) 0.0448 (10) 0.0419 (9) −0.0048 (7) 0.0059 (6) −0.0003 (8)
C2 0.0307 (7) 0.0519 (10) 0.0418 (9) −0.0009 (7) 0.0059 (6) 0.0016 (8)
C3 0.0377 (8) 0.0520 (11) 0.0471 (9) 0.0042 (7) 0.0054 (7) 0.0049 (8)
C4 0.0461 (9) 0.0446 (10) 0.0515 (10) −0.0020 (7) 0.0070 (8) −0.0009 (8)
C5 0.0386 (8) 0.0719 (13) 0.0404 (9) −0.0027 (8) 0.0031 (7) −0.0013 (9)
C6 0.0509 (10) 0.0663 (13) 0.0550 (11) −0.0111 (9) 0.0098 (8) −0.0169 (10)
C7 0.0570 (10) 0.0472 (11) 0.0663 (12) −0.0060 (8) 0.0109 (9) −0.0063 (9)
C8 0.0495 (9) 0.0482 (11) 0.0523 (10) −0.0042 (8) 0.0052 (8) 0.0054 (9)
C9 0.0626 (12) 0.0655 (13) 0.0659 (13) 0.0204 (10) 0.0145 (10) 0.0106 (11)
C10 0.0586 (10) 0.0626 (12) 0.0381 (9) −0.0110 (9) 0.0031 (8) 0.0043 (8)
C11 0.0486 (9) 0.0514 (10) 0.0348 (8) −0.0002 (8) 0.0020 (7) 0.0014 (8)
C12 0.0459 (9) 0.0520 (10) 0.0345 (8) 0.0019 (8) 0.0004 (7) 0.0041 (8)
C13 0.0511 (10) 0.0644 (12) 0.0505 (10) −0.0082 (9) −0.0028 (8) 0.0026 (10)
C14 0.0765 (13) 0.0592 (13) 0.0622 (12) −0.0081 (11) −0.0073 (11) −0.0119 (11)
C15 0.0856 (15) 0.0753 (15) 0.0612 (13) 0.0110 (12) 0.0082 (11) −0.0251 (11)
C16 0.0579 (11) 0.0806 (15) 0.0541 (11) 0.0017 (10) 0.0133 (9) −0.0112 (10)
C17 0.0572 (11) 0.0863 (16) 0.0584 (12) 0.0029 (10) 0.0161 (9) −0.0093 (11)

Geometric parameters (Å, º)

O1—C9 1.220 (2) C9—H9 0.9300
N1—C1 1.387 (2) C10—H10A 0.9700
N1—C4 1.347 (2) C10—H10B 0.9700
N1—C10 1.4677 (19) C10—C11 1.506 (2)
C1—C2 1.405 (2) C11—C12 1.392 (2)
C1—C8 1.384 (2) C11—C16 1.381 (2)
C2—C3 1.431 (2) C12—C13 1.385 (2)
C2—C5 1.400 (2) C12—C17 1.502 (2)
C3—C4 1.375 (2) C13—H13 0.9300
C3—C9 1.428 (2) C13—C14 1.370 (3)
C4—H4 0.9300 C14—H14 0.9300
C5—H5 0.9300 C14—C15 1.367 (3)
C5—C6 1.376 (3) C15—H15 0.9300
C6—H6 0.9300 C15—C16 1.382 (3)
C6—C7 1.386 (3) C16—H16 0.9300
C7—H7 0.9300 C17—H17A 0.9600
C7—C8 1.374 (2) C17—H17B 0.9600
C8—H8 0.9300 C17—H17C 0.9600
C1—N1—C10 125.15 (14) N1—C10—H10A 109.1
C4—N1—C1 108.69 (13) N1—C10—H10B 109.1
C4—N1—C10 126.06 (14) N1—C10—C11 112.57 (14)
N1—C1—C2 107.72 (14) H10A—C10—H10B 107.8
C8—C1—N1 129.84 (15) C11—C10—H10A 109.1
C8—C1—C2 122.44 (15) C11—C10—H10B 109.1
C1—C2—C3 106.65 (14) C12—C11—C10 121.05 (15)
C5—C2—C1 118.56 (16) C16—C11—C10 119.37 (16)
C5—C2—C3 134.79 (16) C16—C11—C12 119.57 (16)
C4—C3—C2 106.38 (14) C11—C12—C17 121.66 (15)
C4—C3—C9 124.34 (17) C13—C12—C11 118.30 (15)
C9—C3—C2 129.24 (16) C13—C12—C17 120.04 (16)
N1—C4—C3 110.55 (15) C12—C13—H13 119.1
N1—C4—H4 124.7 C14—C13—C12 121.77 (17)
C3—C4—H4 124.7 C14—C13—H13 119.1
C2—C5—H5 120.6 C13—C14—H14 120.1
C6—C5—C2 118.87 (16) C15—C14—C13 119.88 (18)
C6—C5—H5 120.6 C15—C14—H14 120.1
C5—C6—H6 119.4 C14—C15—H15 120.3
C5—C6—C7 121.23 (17) C14—C15—C16 119.49 (18)
C7—C6—H6 119.4 C16—C15—H15 120.3
C6—C7—H7 119.3 C11—C16—C15 121.00 (18)
C8—C7—C6 121.48 (18) C11—C16—H16 119.5
C8—C7—H7 119.3 C15—C16—H16 119.5
C1—C8—H8 121.3 C12—C17—H17A 109.5
C7—C8—C1 117.41 (16) C12—C17—H17B 109.5
C7—C8—H8 121.3 C12—C17—H17C 109.5
O1—C9—C3 125.3 (2) H17A—C17—H17B 109.5
O1—C9—H9 117.4 H17A—C17—H17C 109.5
C3—C9—H9 117.4 H17B—C17—H17C 109.5
N1—C1—C2—C3 −0.28 (16) C5—C2—C3—C9 1.2 (3)
N1—C1—C2—C5 −179.55 (13) C5—C6—C7—C8 −0.5 (3)
N1—C1—C8—C7 178.63 (15) C6—C7—C8—C1 0.9 (2)
N1—C10—C11—C12 −69.9 (2) C8—C1—C2—C3 179.02 (14)
N1—C10—C11—C16 111.41 (18) C8—C1—C2—C5 −0.3 (2)
C1—N1—C4—C3 −0.86 (18) C9—C3—C4—N1 178.46 (15)
C1—N1—C10—C11 147.04 (15) C10—N1—C1—C2 177.28 (13)
C1—C2—C3—C4 −0.23 (16) C10—N1—C1—C8 −1.9 (2)
C1—C2—C3—C9 −177.87 (16) C10—N1—C4—C3 −177.41 (13)
C1—C2—C5—C6 0.6 (2) C10—C11—C12—C13 −178.10 (15)
C2—C1—C8—C7 −0.5 (2) C10—C11—C12—C17 2.5 (2)
C2—C3—C4—N1 0.67 (17) C10—C11—C16—C15 178.00 (18)
C2—C3—C9—O1 0.0 (3) C11—C12—C13—C14 −0.3 (3)
C2—C5—C6—C7 −0.3 (2) C12—C11—C16—C15 −0.7 (3)
C3—C2—C5—C6 −178.37 (16) C12—C13—C14—C15 0.1 (3)
C4—N1—C1—C2 0.69 (16) C13—C14—C15—C16 −0.2 (3)
C4—N1—C1—C8 −178.54 (15) C14—C15—C16—C11 0.5 (3)
C4—N1—C10—C11 −37.0 (2) C16—C11—C12—C13 0.5 (2)
C4—C3—C9—O1 −177.28 (17) C16—C11—C12—C17 −178.81 (16)
C5—C2—C3—C4 178.87 (16) C17—C12—C13—C14 179.10 (17)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
C16—H16···O1i 0.93 2.56 3.418 (2) 154

Symmetry code: (i) x, y, z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BT5840).

References

  1. Agilent (2011). CrysAlis PRO Agilent Technologies Ltd, California, USA.
  2. Andreani, A., Rambaldi, M., Locatelli, A. & Pofferi, G. (1994). Eur. J. Med. Chem. 29, 903–906.
  3. Dolomanov, O. V., Bourhis, L. J., Gildea, R. J., Howard, J. A. K. & Puschmann, H. (2009). J. Appl. Cryst. 42, 339–341.
  4. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812010306/bt5840sup1.cif

e-68-o1151-sup1.cif (21.4KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812010306/bt5840Isup2.hkl

e-68-o1151-Isup2.hkl (132.6KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812010306/bt5840Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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