Abstract
In the title compound, C17H15NO, the benzene ring and the indole system are almost perpendicular, making a dihedral angle of 87.82 (6)°. The crystal packing is stabilized by C—H⋯O and π–π stacking interactions with centroid–centroid distances of 3.592 (4) Å between the pyrrole and the benzene rings in the indole systems of neighboring molecules.
Related literature
For general background to the chemistry and anti-inflammatory activity of carboxylic acid derivatives, see: Andreani et al. (1994 ▶).
Experimental
Crystal data
C17H15NO
M r = 249.30
Monoclinic,
a = 10.5251 (3) Å
b = 15.4352 (5) Å
c = 8.2335 (2) Å
β = 99.214 (3)°
V = 1320.33 (7) Å3
Z = 4
Mo Kα radiation
μ = 0.08 mm−1
T = 293 K
0.28 × 0.25 × 0.20 mm
Data collection
Agilent Xcalibur Eos diffractometer
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.981, T max = 1.000
5468 measured reflections
2699 independent reflections
1928 reflections with I > 2σ(I)
R int = 0.016
Refinement
R[F 2 > 2σ(F 2)] = 0.047
wR(F 2) = 0.117
S = 1.04
2699 reflections
173 parameters
H-atom parameters constrained
Δρmax = 0.13 e Å−3
Δρmin = −0.17 e Å−3
Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov, 2009 ▶); software used to prepare material for publication: OLEX2.
Supplementary Material
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812010306/bt5840sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812010306/bt5840Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812010306/bt5840Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| C16—H16⋯O1i | 0.93 | 2.56 | 3.418 (2) | 154 |
Symmetry code: (i)
.
Acknowledgments
We thank the Analytical and Testing Center of Sichuan University for the X-ray measurements.
supplementary crystallographic information
Comment
1-(2-Methyl-benzyl)-1H-indole-3-carbaldehyde is of great importance owing to its wide biological properties (Andreani et al., 1994). The title compound is one of the key intermediates in our synthetic investigations of antibacterial drugs. We report here its crystal structure.
In the title compound, C17H15NO, as shown in Fig 1, the benzene ring with the methyl group in ortho position and the indole system are almost perpendicular, making dihedral angle of 87.82 (6)°. A combination of intermolecular C-H···O and π–π packing interaction plays an important role in the connection of neighbouring molecules. The centroid-centroid distance between the pyrrole ring and the benzene ring in the indole system of the neighbouring molecule is 3.592 (4) Å (symmetry operator: -x, -y, -z).
Experimental
1H-indole-3-carbaldehyde(14 mmol) was dissolved in dry DMF(25 ml)and treated portionwise,under stirring, with 20 mmol NaH. The mixture was stirred at room temperature for 10 min and treated with 20 mmol of 1-chloromethyl-2-methyl-benzene. After 1 h at 90°C under stirring, the mixture was poured onto ice. The resulting precipitate was collected by filtration and crystallized from ethanol with a yield of 70%. Crystals suitable for X-ray analysis were obtained by slow evaporation from a solution of dichloromethane.
Refinement
All H atoms were positioned geometrically and refined using a riding model, with C—H = 0.93–0.97 Å and with Uiso(H) = 1.2 or 1.5Ueq(C) for methyl H atoms.
Figures
Fig. 1.
The molecular structure of the title compound, with displacement ellipsoids drawn at the 30% probability level.
Fig. 2.
A packing diagram of the title compound.
Crystal data
| C17H15NO | F(000) = 528 |
| Mr = 249.30 | Dx = 1.254 Mg m−3 |
| Monoclinic, P21/c | Mo Kα radiation, λ = 0.7107 Å |
| a = 10.5251 (3) Å | Cell parameters from 1937 reflections |
| b = 15.4352 (5) Å | θ = 3.2–29.1° |
| c = 8.2335 (2) Å | µ = 0.08 mm−1 |
| β = 99.214 (3)° | T = 293 K |
| V = 1320.33 (7) Å3 | Block, colorless |
| Z = 4 | 0.28 × 0.25 × 0.20 mm |
Data collection
| Agilent Xcalibur Eos diffractometer | 2699 independent reflections |
| Radiation source: fine-focus sealed tube | 1928 reflections with I > 2σ(I) |
| Graphite monochromator | Rint = 0.016 |
| Detector resolution: 16.0874 pixels mm-1 | θmax = 26.4°, θmin = 3.2° |
| ω scans | h = −11→13 |
| Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011) | k = −11→19 |
| Tmin = 0.981, Tmax = 1.000 | l = −10→4 |
| 5468 measured reflections |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.047 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.117 | H-atom parameters constrained |
| S = 1.04 | w = 1/[σ2(Fo2) + (0.0449P)2 + 0.2065P] where P = (Fo2 + 2Fc2)/3 |
| 2699 reflections | (Δ/σ)max < 0.001 |
| 173 parameters | Δρmax = 0.13 e Å−3 |
| 0 restraints | Δρmin = −0.17 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| O1 | 0.02058 (15) | 0.14964 (11) | −0.33644 (17) | 0.0895 (5) | |
| N1 | 0.21128 (12) | 0.01830 (9) | 0.14071 (15) | 0.0439 (3) | |
| C1 | 0.18887 (13) | −0.04418 (11) | 0.01839 (19) | 0.0404 (4) | |
| C2 | 0.13295 (13) | −0.00278 (11) | −0.12762 (19) | 0.0415 (4) | |
| C3 | 0.12187 (14) | 0.08699 (11) | −0.0886 (2) | 0.0457 (4) | |
| C4 | 0.17018 (15) | 0.09542 (11) | 0.0760 (2) | 0.0475 (4) | |
| H4 | 0.1739 | 0.1472 | 0.1344 | 0.057* | |
| C5 | 0.10025 (15) | −0.05289 (13) | −0.2699 (2) | 0.0506 (4) | |
| H5 | 0.0639 | −0.0273 | −0.3687 | 0.061* | |
| C6 | 0.12281 (16) | −0.14068 (13) | −0.2611 (2) | 0.0573 (5) | |
| H6 | 0.1010 | −0.1744 | −0.3549 | 0.069* | |
| C7 | 0.17749 (16) | −0.17975 (12) | −0.1149 (2) | 0.0567 (5) | |
| H7 | 0.1910 | −0.2393 | −0.1126 | 0.068* | |
| C8 | 0.21221 (15) | −0.13246 (11) | 0.0266 (2) | 0.0503 (4) | |
| H8 | 0.2499 | −0.1587 | 0.1242 | 0.060* | |
| C9 | 0.06793 (18) | 0.15646 (14) | −0.1918 (3) | 0.0642 (5) | |
| H9 | 0.0690 | 0.2113 | −0.1449 | 0.077* | |
| C10 | 0.26384 (17) | 0.00142 (12) | 0.31387 (19) | 0.0536 (5) | |
| H10A | 0.3153 | −0.0510 | 0.3210 | 0.064* | |
| H10B | 0.1933 | −0.0082 | 0.3745 | 0.064* | |
| C11 | 0.34564 (15) | 0.07493 (11) | 0.39236 (19) | 0.0455 (4) | |
| C12 | 0.46514 (15) | 0.09284 (11) | 0.34816 (19) | 0.0448 (4) | |
| C13 | 0.53745 (17) | 0.15965 (12) | 0.4283 (2) | 0.0565 (5) | |
| H13 | 0.6176 | 0.1721 | 0.4002 | 0.068* | |
| C14 | 0.4941 (2) | 0.20792 (14) | 0.5479 (2) | 0.0679 (6) | |
| H14 | 0.5445 | 0.2525 | 0.5997 | 0.082* | |
| C15 | 0.3765 (2) | 0.19041 (15) | 0.5909 (3) | 0.0744 (6) | |
| H15 | 0.3467 | 0.2228 | 0.6722 | 0.089* | |
| C16 | 0.30237 (18) | 0.12415 (14) | 0.5125 (2) | 0.0637 (5) | |
| H16 | 0.2221 | 0.1125 | 0.5411 | 0.076* | |
| C17 | 0.51550 (17) | 0.04237 (15) | 0.2160 (2) | 0.0666 (6) | |
| H17A | 0.5075 | −0.0185 | 0.2360 | 0.100* | |
| H17B | 0.6044 | 0.0565 | 0.2168 | 0.100* | |
| H17C | 0.4667 | 0.0568 | 0.1108 | 0.100* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O1 | 0.1027 (11) | 0.1071 (13) | 0.0562 (9) | 0.0489 (10) | 0.0050 (8) | 0.0189 (9) |
| N1 | 0.0436 (7) | 0.0468 (8) | 0.0395 (7) | −0.0044 (6) | 0.0014 (6) | 0.0004 (7) |
| C1 | 0.0344 (8) | 0.0448 (10) | 0.0419 (9) | −0.0048 (7) | 0.0059 (6) | −0.0003 (8) |
| C2 | 0.0307 (7) | 0.0519 (10) | 0.0418 (9) | −0.0009 (7) | 0.0059 (6) | 0.0016 (8) |
| C3 | 0.0377 (8) | 0.0520 (11) | 0.0471 (9) | 0.0042 (7) | 0.0054 (7) | 0.0049 (8) |
| C4 | 0.0461 (9) | 0.0446 (10) | 0.0515 (10) | −0.0020 (7) | 0.0070 (8) | −0.0009 (8) |
| C5 | 0.0386 (8) | 0.0719 (13) | 0.0404 (9) | −0.0027 (8) | 0.0031 (7) | −0.0013 (9) |
| C6 | 0.0509 (10) | 0.0663 (13) | 0.0550 (11) | −0.0111 (9) | 0.0098 (8) | −0.0169 (10) |
| C7 | 0.0570 (10) | 0.0472 (11) | 0.0663 (12) | −0.0060 (8) | 0.0109 (9) | −0.0063 (9) |
| C8 | 0.0495 (9) | 0.0482 (11) | 0.0523 (10) | −0.0042 (8) | 0.0052 (8) | 0.0054 (9) |
| C9 | 0.0626 (12) | 0.0655 (13) | 0.0659 (13) | 0.0204 (10) | 0.0145 (10) | 0.0106 (11) |
| C10 | 0.0586 (10) | 0.0626 (12) | 0.0381 (9) | −0.0110 (9) | 0.0031 (8) | 0.0043 (8) |
| C11 | 0.0486 (9) | 0.0514 (10) | 0.0348 (8) | −0.0002 (8) | 0.0020 (7) | 0.0014 (8) |
| C12 | 0.0459 (9) | 0.0520 (10) | 0.0345 (8) | 0.0019 (8) | 0.0004 (7) | 0.0041 (8) |
| C13 | 0.0511 (10) | 0.0644 (12) | 0.0505 (10) | −0.0082 (9) | −0.0028 (8) | 0.0026 (10) |
| C14 | 0.0765 (13) | 0.0592 (13) | 0.0622 (12) | −0.0081 (11) | −0.0073 (11) | −0.0119 (11) |
| C15 | 0.0856 (15) | 0.0753 (15) | 0.0612 (13) | 0.0110 (12) | 0.0082 (11) | −0.0251 (11) |
| C16 | 0.0579 (11) | 0.0806 (15) | 0.0541 (11) | 0.0017 (10) | 0.0133 (9) | −0.0112 (10) |
| C17 | 0.0572 (11) | 0.0863 (16) | 0.0584 (12) | 0.0029 (10) | 0.0161 (9) | −0.0093 (11) |
Geometric parameters (Å, º)
| O1—C9 | 1.220 (2) | C9—H9 | 0.9300 |
| N1—C1 | 1.387 (2) | C10—H10A | 0.9700 |
| N1—C4 | 1.347 (2) | C10—H10B | 0.9700 |
| N1—C10 | 1.4677 (19) | C10—C11 | 1.506 (2) |
| C1—C2 | 1.405 (2) | C11—C12 | 1.392 (2) |
| C1—C8 | 1.384 (2) | C11—C16 | 1.381 (2) |
| C2—C3 | 1.431 (2) | C12—C13 | 1.385 (2) |
| C2—C5 | 1.400 (2) | C12—C17 | 1.502 (2) |
| C3—C4 | 1.375 (2) | C13—H13 | 0.9300 |
| C3—C9 | 1.428 (2) | C13—C14 | 1.370 (3) |
| C4—H4 | 0.9300 | C14—H14 | 0.9300 |
| C5—H5 | 0.9300 | C14—C15 | 1.367 (3) |
| C5—C6 | 1.376 (3) | C15—H15 | 0.9300 |
| C6—H6 | 0.9300 | C15—C16 | 1.382 (3) |
| C6—C7 | 1.386 (3) | C16—H16 | 0.9300 |
| C7—H7 | 0.9300 | C17—H17A | 0.9600 |
| C7—C8 | 1.374 (2) | C17—H17B | 0.9600 |
| C8—H8 | 0.9300 | C17—H17C | 0.9600 |
| C1—N1—C10 | 125.15 (14) | N1—C10—H10A | 109.1 |
| C4—N1—C1 | 108.69 (13) | N1—C10—H10B | 109.1 |
| C4—N1—C10 | 126.06 (14) | N1—C10—C11 | 112.57 (14) |
| N1—C1—C2 | 107.72 (14) | H10A—C10—H10B | 107.8 |
| C8—C1—N1 | 129.84 (15) | C11—C10—H10A | 109.1 |
| C8—C1—C2 | 122.44 (15) | C11—C10—H10B | 109.1 |
| C1—C2—C3 | 106.65 (14) | C12—C11—C10 | 121.05 (15) |
| C5—C2—C1 | 118.56 (16) | C16—C11—C10 | 119.37 (16) |
| C5—C2—C3 | 134.79 (16) | C16—C11—C12 | 119.57 (16) |
| C4—C3—C2 | 106.38 (14) | C11—C12—C17 | 121.66 (15) |
| C4—C3—C9 | 124.34 (17) | C13—C12—C11 | 118.30 (15) |
| C9—C3—C2 | 129.24 (16) | C13—C12—C17 | 120.04 (16) |
| N1—C4—C3 | 110.55 (15) | C12—C13—H13 | 119.1 |
| N1—C4—H4 | 124.7 | C14—C13—C12 | 121.77 (17) |
| C3—C4—H4 | 124.7 | C14—C13—H13 | 119.1 |
| C2—C5—H5 | 120.6 | C13—C14—H14 | 120.1 |
| C6—C5—C2 | 118.87 (16) | C15—C14—C13 | 119.88 (18) |
| C6—C5—H5 | 120.6 | C15—C14—H14 | 120.1 |
| C5—C6—H6 | 119.4 | C14—C15—H15 | 120.3 |
| C5—C6—C7 | 121.23 (17) | C14—C15—C16 | 119.49 (18) |
| C7—C6—H6 | 119.4 | C16—C15—H15 | 120.3 |
| C6—C7—H7 | 119.3 | C11—C16—C15 | 121.00 (18) |
| C8—C7—C6 | 121.48 (18) | C11—C16—H16 | 119.5 |
| C8—C7—H7 | 119.3 | C15—C16—H16 | 119.5 |
| C1—C8—H8 | 121.3 | C12—C17—H17A | 109.5 |
| C7—C8—C1 | 117.41 (16) | C12—C17—H17B | 109.5 |
| C7—C8—H8 | 121.3 | C12—C17—H17C | 109.5 |
| O1—C9—C3 | 125.3 (2) | H17A—C17—H17B | 109.5 |
| O1—C9—H9 | 117.4 | H17A—C17—H17C | 109.5 |
| C3—C9—H9 | 117.4 | H17B—C17—H17C | 109.5 |
| N1—C1—C2—C3 | −0.28 (16) | C5—C2—C3—C9 | 1.2 (3) |
| N1—C1—C2—C5 | −179.55 (13) | C5—C6—C7—C8 | −0.5 (3) |
| N1—C1—C8—C7 | 178.63 (15) | C6—C7—C8—C1 | 0.9 (2) |
| N1—C10—C11—C12 | −69.9 (2) | C8—C1—C2—C3 | 179.02 (14) |
| N1—C10—C11—C16 | 111.41 (18) | C8—C1—C2—C5 | −0.3 (2) |
| C1—N1—C4—C3 | −0.86 (18) | C9—C3—C4—N1 | 178.46 (15) |
| C1—N1—C10—C11 | 147.04 (15) | C10—N1—C1—C2 | 177.28 (13) |
| C1—C2—C3—C4 | −0.23 (16) | C10—N1—C1—C8 | −1.9 (2) |
| C1—C2—C3—C9 | −177.87 (16) | C10—N1—C4—C3 | −177.41 (13) |
| C1—C2—C5—C6 | 0.6 (2) | C10—C11—C12—C13 | −178.10 (15) |
| C2—C1—C8—C7 | −0.5 (2) | C10—C11—C12—C17 | 2.5 (2) |
| C2—C3—C4—N1 | 0.67 (17) | C10—C11—C16—C15 | 178.00 (18) |
| C2—C3—C9—O1 | 0.0 (3) | C11—C12—C13—C14 | −0.3 (3) |
| C2—C5—C6—C7 | −0.3 (2) | C12—C11—C16—C15 | −0.7 (3) |
| C3—C2—C5—C6 | −178.37 (16) | C12—C13—C14—C15 | 0.1 (3) |
| C4—N1—C1—C2 | 0.69 (16) | C13—C14—C15—C16 | −0.2 (3) |
| C4—N1—C1—C8 | −178.54 (15) | C14—C15—C16—C11 | 0.5 (3) |
| C4—N1—C10—C11 | −37.0 (2) | C16—C11—C12—C13 | 0.5 (2) |
| C4—C3—C9—O1 | −177.28 (17) | C16—C11—C12—C17 | −178.81 (16) |
| C5—C2—C3—C4 | 178.87 (16) | C17—C12—C13—C14 | 179.10 (17) |
Hydrogen-bond geometry (Å, º)
| D—H···A | D—H | H···A | D···A | D—H···A |
| C16—H16···O1i | 0.93 | 2.56 | 3.418 (2) | 154 |
Symmetry code: (i) x, y, z+1.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BT5840).
References
- Agilent (2011). CrysAlis PRO Agilent Technologies Ltd, California, USA.
- Andreani, A., Rambaldi, M., Locatelli, A. & Pofferi, G. (1994). Eur. J. Med. Chem. 29, 903–906.
- Dolomanov, O. V., Bourhis, L. J., Gildea, R. J., Howard, J. A. K. & Puschmann, H. (2009). J. Appl. Cryst. 42, 339–341.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812010306/bt5840sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812010306/bt5840Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812010306/bt5840Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


