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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Mar 28;68(Pt 4):o1203. doi: 10.1107/S1600536812010823

2-[1-(1-Phenyl­eth­yl)imidazolidin-2-yl­idene]malononitrile

Xiao-Wei Liu a, Liang-Zhong Xu a,*
PMCID: PMC3344140  PMID: 22606143

Abstract

In the title compound, C14H14N4, the imidazolidine moiety is nearly planar, having an N—C—N—C torsion angle of 4.43 (3)°. The crystal structure is characterized by classical N—H⋯N hydrogen bonds, which form inversion dimers.

Related literature  

For the biological activity of compounds containing a 2-(imidazolidin-2-ylidene)malononitrile group, see: Hense et al. (2002). For a related structure, see: Feng et al. (2008). For the synthesis of the title compound, see: Jeschke et al. (2002).graphic file with name e-68-o1203-scheme1.jpg

Experimental  

Crystal data  

  • C14H14N4

  • M r = 238.29

  • Triclinic, Inline graphic

  • a = 6.6446 (13) Å

  • b = 8.0106 (16) Å

  • c = 12.847 (3) Å

  • α = 90.51 (3)°

  • β = 101.85 (3)°

  • γ = 107.76 (3)°

  • V = 635.5 (3) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.08 mm−1

  • T = 295 K

  • 0.46 × 0.41 × 0.11 mm

Data collection  

  • Rigaku R-AXIS RAPID IP diffractometer

  • Absorption correction: multi-scan (CrystalClear; Rigaku, 2005) T min = 0.965, T max = 0.992

  • 6293 measured reflections

  • 2898 independent reflections

  • 2112 reflections with I > 2σ(I)

  • R int = 0.019

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.044

  • wR(F 2) = 0.145

  • S = 1.15

  • 2898 reflections

  • 164 parameters

  • H-atom parameters constrained

  • Δρmax = 0.21 e Å−3

  • Δρmin = −0.19 e Å−3

Data collection: CrystalClear (Rigaku, 2005); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812010823/rk2338sup1.cif

e-68-o1203-sup1.cif (16.9KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812010823/rk2338Isup2.hkl

e-68-o1203-Isup2.hkl (142.2KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812010823/rk2338Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N2—H2A⋯N4i 0.86 2.27 3.032 (2) 148

Symmetry code: (i) Inline graphic.

supplementary crystallographic information

Comment

Recently, imidazolidin is an important kind of group in organic chemistry. Compounds containing the 2-(imidazolidin-2-ylidene)malononitrile group have attracted much interest because compounds containing a imidazole ring system are well known as efficient insecticide in pesticides, and have good plant-growth regulatory activity for a wide variety of crops (Hense, et al., 2002). We report herein the crystal structure of title compound.

In title molecule (Fig. 1), the bond lengths and angles of the imidazolidin rings are in agreement with those in previous reports (Feng et al., 2008). The imidazolidin moiety has a small torsion angle N1–C11–N2–C10 = 4.43 (3)° which is nearly closed to a plane. The main plane of imidazolidin ring and the benzene ring make a dihedral angle of 87.18 (2)°. The crystal structure is characterized by N2–H2A···N4i classical intermolecular hydrogen bonds and centosymmetrical dimers with using these. H-bonds parameters: N2–H2A = 0.86Å, H2A···N4i = 2.27Å, N2···N4i = 3.032 (2)Å and angle N2–H2A···N4i = 147.6°. Symmetry code: (i) -x+2, -y, -z+2.

Experimental

The title compound was prepared according Jeschke et al., 2002. Single crystals suitable for X-ray measurement were obtained by recrystallization from the mixture of acetone and methanol at room temperature.

Refinement

H atoms were placed in calculated positions, with C–H = 0.93-0.98Å and N–H = 0.86Å, and included in the final cycles of refinement using a riding model, with Uiso(H) = 1.5Ueq(C) for methyl H atoms and 1.2Ueq(C,N) for other.

Figures

Fig. 1.

Fig. 1.

View of the title compound with the atom numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. H atoms are presented as a small spheres of arbitrary radius.

Crystal data

C14H14N4 Z = 2
Mr = 238.29 F(000) = 252
Triclinic, P1 Dx = 1.245 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 6.6446 (13) Å Cell parameters from 4704 reflections
b = 8.0106 (16) Å θ = 6.1–55.0°
c = 12.847 (3) Å µ = 0.08 mm1
α = 90.51 (3)° T = 295 K
β = 101.85 (3)° Block, colourless
γ = 107.76 (3)° 0.46 × 0.41 × 0.11 mm
V = 635.5 (3) Å3

Data collection

Rigaku R-AXIS RAPID IP diffractometer 2898 independent reflections
Radiation source: Rotating Anode 2112 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.019
φ and ω scans θmax = 27.5°, θmin = 3.0°
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005) h = −8→8
Tmin = 0.965, Tmax = 0.992 k = −10→10
6293 measured reflections l = −16→16

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.044 H-atom parameters constrained
wR(F2) = 0.145 w = 1/[σ2(Fo2) + (0.063P)2 + 0.0913P] where P = (Fo2 + 2Fc2)/3
S = 1.15 (Δ/σ)max < 0.001
2898 reflections Δρmax = 0.21 e Å3
164 parameters Δρmin = −0.19 e Å3
0 restraints Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methods Extinction coefficient: 0.210 (17)

Special details

Geometry. All s.u.'s (except the s.u.' in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
N1 0.43363 (19) 0.16514 (14) 0.79468 (10) 0.0520 (3)
N2 0.72640 (19) 0.19909 (15) 0.91821 (10) 0.0536 (3)
H2A 0.8196 0.1712 0.9659 0.064*
N3 0.1806 (3) −0.35508 (19) 0.77933 (15) 0.0898 (6)
N4 0.8269 (3) −0.20051 (18) 0.96591 (14) 0.0808 (5)
C1 0.4326 (3) 0.1738 (3) 0.56429 (16) 0.0782 (5)
H1A 0.5353 0.1251 0.5998 0.094*
C2 0.4528 (5) 0.2430 (4) 0.4674 (2) 0.1102 (9)
H2B 0.5692 0.2406 0.4384 0.132*
C3 0.3038 (7) 0.3147 (3) 0.41400 (19) 0.1218 (12)
H3A 0.3166 0.3591 0.3482 0.146*
C4 0.1366 (5) 0.3208 (3) 0.45755 (19) 0.1070 (9)
H4A 0.0360 0.3716 0.4219 0.128*
C5 0.1144 (3) 0.2526 (2) 0.55405 (15) 0.0762 (5)
H5A −0.0013 0.2578 0.5828 0.091*
C6 0.2612 (2) 0.17651 (18) 0.60873 (12) 0.0535 (4)
C7 0.2351 (2) 0.09009 (18) 0.71185 (12) 0.0521 (4)
H7A 0.2186 −0.0345 0.6984 0.063*
C8 0.0397 (3) 0.0987 (3) 0.75267 (16) 0.0819 (6)
H8A 0.0358 0.0410 0.8177 0.123*
H8B −0.0899 0.0411 0.7003 0.123*
H8C 0.0495 0.2194 0.7658 0.123*
C9 0.5134 (3) 0.35393 (18) 0.82776 (14) 0.0637 (4)
H9A 0.4198 0.3861 0.8676 0.076*
H9B 0.5236 0.4237 0.7666 0.076*
C10 0.7356 (3) 0.3781 (2) 0.89770 (15) 0.0652 (5)
H10A 0.8496 0.4324 0.8606 0.078*
H10B 0.7582 0.4487 0.9633 0.078*
C11 0.5563 (2) 0.08185 (16) 0.85453 (10) 0.0427 (3)
C12 0.5237 (2) −0.10079 (17) 0.85565 (11) 0.0463 (3)
C13 0.3310 (3) −0.23639 (18) 0.81102 (13) 0.0571 (4)
C14 0.6899 (2) −0.15619 (17) 0.91645 (12) 0.0544 (4)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
N1 0.0518 (7) 0.0364 (6) 0.0600 (7) 0.0146 (5) −0.0060 (5) 0.0044 (5)
N2 0.0505 (7) 0.0411 (6) 0.0607 (7) 0.0139 (5) −0.0058 (5) 0.0029 (5)
N3 0.0747 (10) 0.0488 (8) 0.1153 (13) 0.0034 (7) −0.0228 (9) 0.0179 (8)
N4 0.0751 (10) 0.0476 (7) 0.1022 (11) 0.0227 (7) −0.0245 (8) 0.0060 (7)
C1 0.0797 (12) 0.0727 (11) 0.0818 (12) 0.0196 (10) 0.0231 (10) 0.0037 (9)
C2 0.138 (2) 0.0916 (17) 0.0893 (16) −0.0008 (16) 0.0555 (16) −0.0052 (14)
C3 0.193 (3) 0.0721 (14) 0.0601 (12) −0.0100 (18) 0.0169 (18) 0.0092 (11)
C4 0.146 (2) 0.0751 (14) 0.0712 (13) 0.0233 (14) −0.0239 (15) 0.0214 (11)
C5 0.0804 (12) 0.0661 (10) 0.0737 (11) 0.0273 (9) −0.0090 (9) 0.0156 (9)
C6 0.0550 (8) 0.0407 (7) 0.0575 (8) 0.0128 (6) −0.0004 (6) 0.0030 (6)
C7 0.0453 (7) 0.0438 (7) 0.0607 (8) 0.0137 (6) −0.0025 (6) 0.0071 (6)
C8 0.0537 (10) 0.1076 (16) 0.0791 (12) 0.0189 (10) 0.0124 (8) 0.0145 (11)
C9 0.0651 (10) 0.0386 (7) 0.0789 (10) 0.0170 (7) −0.0038 (8) 0.0042 (7)
C10 0.0620 (9) 0.0405 (7) 0.0816 (11) 0.0122 (7) −0.0036 (8) 0.0037 (7)
C11 0.0420 (6) 0.0404 (6) 0.0454 (7) 0.0135 (5) 0.0080 (5) 0.0068 (5)
C12 0.0472 (7) 0.0380 (6) 0.0505 (7) 0.0140 (5) 0.0028 (5) 0.0086 (5)
C13 0.0573 (9) 0.0399 (7) 0.0659 (9) 0.0141 (6) −0.0029 (7) 0.0128 (6)
C14 0.0563 (8) 0.0363 (7) 0.0627 (9) 0.0132 (6) −0.0024 (7) 0.0064 (6)

Geometric parameters (Å, º)

N1—C11 1.3356 (16) C5—C6 1.381 (2)
N1—C9 1.4682 (18) C5—H5A 0.9300
N1—C7 1.4702 (18) C6—C7 1.517 (2)
N2—C11 1.3371 (18) C7—C8 1.516 (2)
N2—C10 1.4452 (19) C7—H7A 0.9800
N2—H2A 0.8600 C8—H8A 0.9600
N3—C13 1.147 (2) C8—H8B 0.9600
N4—C14 1.1496 (19) C8—H8C 0.9600
C1—C6 1.380 (3) C9—C10 1.517 (2)
C1—C2 1.382 (3) C9—H9A 0.9700
C1—H1A 0.9300 C9—H9B 0.9700
C2—C3 1.362 (4) C10—H10A 0.9700
C2—H2B 0.9300 C10—H10B 0.9700
C3—C4 1.355 (4) C11—C12 1.4129 (18)
C3—H3A 0.9300 C12—C14 1.4062 (19)
C4—C5 1.377 (3) C12—C13 1.410 (2)
C4—H4A 0.9300
C11—N1—C9 110.32 (12) C8—C7—H7A 107.2
C11—N1—C7 128.66 (11) C6—C7—H7A 107.2
C9—N1—C7 120.86 (11) C7—C8—H8A 109.5
C11—N2—C10 112.21 (12) C7—C8—H8B 109.5
C11—N2—H2A 123.9 H8A—C8—H8B 109.5
C10—N2—H2A 123.9 C7—C8—H8C 109.5
C6—C1—C2 120.6 (2) H8A—C8—H8C 109.5
C6—C1—H1A 119.7 H8B—C8—H8C 109.5
C2—C1—H1A 119.7 N1—C9—C10 103.10 (12)
C3—C2—C1 120.6 (3) N1—C9—H9A 111.1
C3—C2—H2B 119.7 C10—C9—H9A 111.1
C1—C2—H2B 119.7 N1—C9—H9B 111.1
C4—C3—C2 119.5 (2) C10—C9—H9B 111.1
C4—C3—H3A 120.3 H9A—C9—H9B 109.1
C2—C3—H3A 120.3 N2—C10—C9 102.14 (12)
C3—C4—C5 120.6 (2) N2—C10—H10A 111.3
C3—C4—H4A 119.7 C9—C10—H10A 111.3
C5—C4—H4A 119.7 N2—C10—H10B 111.3
C4—C5—C6 121.0 (2) C9—C10—H10B 111.3
C4—C5—H5A 119.5 H10A—C10—H10B 109.2
C6—C5—H5A 119.5 N1—C11—N2 109.74 (11)
C1—C6—C5 117.79 (17) N1—C11—C12 128.42 (12)
C1—C6—C7 119.56 (14) N2—C11—C12 121.84 (12)
C5—C6—C7 122.59 (16) C14—C12—C13 115.29 (12)
N1—C7—C8 110.06 (13) C14—C12—C11 117.82 (12)
N1—C7—C6 109.75 (12) C13—C12—C11 126.52 (12)
C8—C7—C6 115.10 (13) N3—C13—C12 174.86 (15)
N1—C7—H7A 107.2 N4—C14—C12 179.51 (18)
C6—C1—C2—C3 −0.1 (3) C5—C6—C7—C8 −2.0 (2)
C1—C2—C3—C4 1.2 (4) C11—N1—C9—C10 13.82 (18)
C2—C3—C4—C5 −1.1 (4) C7—N1—C9—C10 −170.38 (14)
C3—C4—C5—C6 0.0 (3) C11—N2—C10—C9 12.63 (19)
C2—C1—C6—C5 −1.0 (3) N1—C9—C10—N2 −15.03 (18)
C2—C1—C6—C7 176.36 (17) C9—N1—C11—N2 −6.47 (17)
C4—C5—C6—C1 1.0 (3) C7—N1—C11—N2 178.16 (14)
C4—C5—C6—C7 −176.22 (17) C9—N1—C11—C12 173.57 (15)
C11—N1—C7—C8 106.76 (18) C7—N1—C11—C12 −1.8 (2)
C9—N1—C7—C8 −68.19 (19) C10—N2—C11—N1 −4.43 (18)
C11—N1—C7—C6 −125.59 (15) C10—N2—C11—C12 175.54 (14)
C9—N1—C7—C6 59.46 (18) N1—C11—C12—C14 172.25 (14)
C1—C6—C7—N1 56.03 (18) N2—C11—C12—C14 −7.7 (2)
C5—C6—C7—N1 −126.78 (16) N1—C11—C12—C13 −15.1 (2)
C1—C6—C7—C8 −179.18 (16) N2—C11—C12—C13 164.94 (15)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
N2—H2A···N4i 0.86 2.27 3.032 (2) 148

Symmetry code: (i) −x+2, −y, −z+2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: RK2338).

References

  1. Feng, X.-Z., Yan, F.-F. & Li, Z.-P. (2008). Acta Cryst. E64, o1120. [DOI] [PMC free article] [PubMed]
  2. Hense, A., Fischer, A. & Gesing, E. R. (2002). WO Patent 2002096872.
  3. Jeschke, P., Beck, M. E. & Kraemer, W. (2002). German Patent 10119423.
  4. Rigaku (2005). CrystalClear Rigaku Corporation, Tokyo, Japan.
  5. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812010823/rk2338sup1.cif

e-68-o1203-sup1.cif (16.9KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812010823/rk2338Isup2.hkl

e-68-o1203-Isup2.hkl (142.2KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812010823/rk2338Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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