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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Mar 28;68(Pt 4):o1216. doi: 10.1107/S1600536812012652

Benzyl 2-methyl-3-[(E)-(thio­phen-2-yl)methyl­idene]dithio­carbazate

Saroj K S Hazari a, B K Dey a, Tapashi G Roy a,, B Ganguly a, Seik Weng Ng b,c, Edward R T Tiekink b,*
PMCID: PMC3344150  PMID: 22606153

Abstract

In the title compound, C14H14N2S3, the thione S atom and methyl group are syn, as are the two thio­ether S atoms. The mol­ecule is twisted, the dihedral angles between the central (C2N2S2) residue and the pendent 2-thienyl and phenyl rings being 21.57 (6) and 77.54 (3)°, respectively. In the crystal, mol­ecules assemble into a three-dimensional architecture via C—H⋯π inter­actions, involving both the five- and six-membered rings as acceptors, as well as S⋯S inter­actions [3.3406 (5) Å] between centrosymmetrically related 2-thienyl rings.

Related literature  

For the biological activity of related Schiff base compounds, see: Hazari et al. (2002). For a related structure, see: Scovill & Silverton (1980).graphic file with name e-68-o1216-scheme1.jpg

Experimental  

Crystal data  

  • C14H14N2S3

  • M r = 306.45

  • Monoclinic, Inline graphic

  • a = 6.0585 (1) Å

  • b = 19.3774 (5) Å

  • c = 12.5769 (3) Å

  • β = 103.200 (2)°

  • V = 1437.49 (6) Å3

  • Z = 4

  • Cu Kα radiation

  • μ = 4.60 mm−1

  • T = 100 K

  • 0.15 × 0.15 × 0.15 mm

Data collection  

  • Agilent SuperNova Dual diffractometer with an Atlas detector

  • Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011) T min = 0.871, T max = 1.000

  • 5742 measured reflections

  • 2958 independent reflections

  • 2746 reflections with I > 2σ(I)

  • R int = 0.017

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.029

  • wR(F 2) = 0.080

  • S = 1.04

  • 2958 reflections

  • 173 parameters

  • H-atom parameters constrained

  • Δρmax = 0.29 e Å−3

  • Δρmin = −0.50 e Å−3

Data collection: CrysAlis PRO (Agilent, 2011); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812012652/hg5198sup1.cif

e-68-o1216-sup1.cif (17.6KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812012652/hg5198Isup2.hkl

e-68-o1216-Isup2.hkl (145.2KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812012652/hg5198Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

Cg1 and Cg2 are the centroids of the S1,C1–C4 and C9–C14 rings, respectively.

D—H⋯A D—H H⋯A DA D—H⋯A
C6—H6ACg1i 0.98 2.85 3.4021 (17) 117
C8—H8ACg2ii 0.99 2.80 3.4795 (15) 127

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

The University Grants Commission, Bangladesh, is thanked for a fellowship to BG. We also thank the Ministry of Higher Education (Malaysia) for funding structural studies through the High-Impact Research scheme (UM.C/HIR/MOHE/SC/12).

supplementary crystallographic information

Comment

As a continuation of systematic studies into the synthesis, characterization and biological activities of substituted Schiff base ligands and their metal complexes (Hazari et al., 2002), crystals of the title compound, (I), were isolated and characterized crystallographically.

In (I), Fig. 1, the conformation about the imine N1═C5 bond [1.2876 (18) Å] is E. The six atoms of the central residue (S2,S3,N1,N2,C6 & C7) are co-planar having a r.m.s. deviation for the fitted atoms of 0.0395 Å. The maximum deviations from this plane are 0.0478 (7) Å for the S2 atom and -0.0557 (7) Å for the N1 atom. The 2-thienyl and phenyl rings form dihedral angles of 21.57 (6) and 77.54 (3)°, respectively, with the central plane, indicating a twisted molecule. In a rare example of a closely related compound, an S-methyl ester, the extreme ends of the molecule are both co-planar with the central residue (Scovill & Silverton, 1980). In (I), the thione-S and methyl group are syn, as are the two thioether-S atoms.

Molecules are consolidated into a three-dimensional architecture by C—H···π interactions, involving both the five- and six-membered rings as acceptors, Table 1, as well as S1···S1i interactions [distance = 3.3406 (5) Å for symmetry operation i: 1 - x, 1 - y, -z] between centrosymmetrically related 2-thienyl rings, Fig. 2.

Experimental

The title compound was isolated after a four step synthetic procedure. Synthesis of N-methyl-S-benzyldithiocarbazate: Potassium hydroxide (11.5 g), was dissolved in 90% ethanol (60 ml) and the mixture was cooled down to 273 K in an ice-bath. To this, methyl hydrazine (11.1 ml) was added slowly with mechanical stirring. A solution of carbondisulfide (12 ml) was added drop-wise from a burette with constant stirring over a period of 1 h. During this addition, the temperature of the reaction mixture was not to allowed to rise above 279 K. A yellow solution was obtained. Benzyl chloride (25 mL) was then added drop-wise with vigorous mechanical stirring. After the complete addition, the mixture was stirred for further 15 min, whereupon well formed crystals appeared. The product was separated by filtration and washed with water and recrystallized from ethanol and dried in a vacuum desiccator over silica gel. Yield: 15.75 g. M.pt: 373–375 K.

Synthesis of (I): A hot solution thiophene-2-carboxaldehyde (1.05 ml, 10 mmol) in absolute ethanol (40 ml) was mixed with a hot solution of N-methyl-S-benzyldithiocarbazate (2.12 g, 10 mmol) in the same solvent (40 ml). The mixture was refluxed for 6 h. on a water bath. After reducing a pale-red product appeared which was filtered off. This product was washed with ethanol several times (3 × 2 ml) and dried in a vacuum desiccator over silica gel. Yield: 1.55 g. M.pt: 433–435 K.

Attempted preparation of the dioxomolybdenum(VI) complex with (I): [MoO2(acac)2] (10 mmol) was dissolved in dry ethanol (40 ml) to which a hot solution of L (10 mmol) in dry ethanol (40 ml) was added. The mixture was refluxed for 6 h. on a water bath. After reducing the volume and standing overnight a light-blue product appeared, which was washed with ethanol for several times and dried in a vacuum desiccator over silica gel. M. pt: of product was > 493 K. Crystallization: The product was dissolved in ethanol to which half volume of petroleum ether was added (10/5 ml v/v). The solution was left for several days after which the title compound, (I), was deposited as crystals.

Refinement

The C-bound H-atoms were placed in calculated positions (C—H = 0.95–0.99 Å) and were included in the refinement in the riding model approximation, with Uiso(H) = 1.2–1.5Uequiv(C).

Figures

Fig. 1.

Fig. 1.

The molecular structure of (I) showing the atom-labelling scheme and displacement ellipsoids at the 50% probability level.

Fig. 2.

Fig. 2.

A view of the unit-cell contents in projection down the a axis in (I). The C—H···π and S···S interactions are shown as purple and orange dashed lines, respectively.

Crystal data

C14H14N2S3 F(000) = 640
Mr = 306.45 Dx = 1.416 Mg m3
Monoclinic, P21/n Cu Kα radiation, λ = 1.54184 Å
Hall symbol: -P 2yn Cell parameters from 3411 reflections
a = 6.0585 (1) Å θ = 3.6–76.3°
b = 19.3774 (5) Å µ = 4.60 mm1
c = 12.5769 (3) Å T = 100 K
β = 103.200 (2)° Block, yellow-green
V = 1437.49 (6) Å3 0.15 × 0.15 × 0.15 mm
Z = 4

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector 2958 independent reflections
Radiation source: SuperNova (Cu) X-ray Source 2746 reflections with I > 2σ(I)
Mirror monochromator Rint = 0.017
Detector resolution: 10.4041 pixels mm-1 θmax = 76.5°, θmin = 4.3°
ω scan h = −7→6
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011) k = −21→24
Tmin = 0.871, Tmax = 1.000 l = −14→15
5742 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.029 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.080 H-atom parameters constrained
S = 1.04 w = 1/[σ2(Fo2) + (0.0498P)2 + 0.373P] where P = (Fo2 + 2Fc2)/3
2958 reflections (Δ/σ)max = 0.001
173 parameters Δρmax = 0.29 e Å3
0 restraints Δρmin = −0.50 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
S1 0.38152 (6) 0.42510 (2) 0.02208 (3) 0.02374 (11)
S2 0.98715 (5) 0.412867 (18) 0.30849 (3) 0.01609 (10)
S3 1.13698 (6) 0.28550 (2) 0.44362 (3) 0.02327 (11)
N1 0.6131 (2) 0.34137 (6) 0.21795 (9) 0.0164 (2)
N2 0.7444 (2) 0.30069 (6) 0.29841 (9) 0.0173 (2)
C1 0.1243 (3) 0.43987 (9) −0.06539 (13) 0.0309 (4)
H1 0.0995 0.4737 −0.1215 0.037*
C2 −0.0402 (3) 0.39739 (10) −0.04503 (13) 0.0308 (4)
H2 −0.1931 0.3985 −0.0855 0.037*
C3 0.0401 (3) 0.35160 (8) 0.04254 (12) 0.0226 (3)
H3 −0.0520 0.3185 0.0677 0.027*
C4 0.2703 (2) 0.36066 (8) 0.08760 (11) 0.0176 (3)
C5 0.4082 (2) 0.32207 (7) 0.17652 (11) 0.0171 (3)
H5 0.3479 0.2825 0.2044 0.020*
C6 0.6657 (3) 0.23282 (8) 0.32401 (13) 0.0230 (3)
H6A 0.7881 0.2090 0.3753 0.035*
H6B 0.6211 0.2057 0.2568 0.035*
H6C 0.5352 0.2382 0.3571 0.035*
C7 0.9478 (2) 0.32789 (7) 0.35022 (11) 0.0161 (3)
C8 1.2618 (2) 0.43443 (8) 0.39547 (11) 0.0182 (3)
H8A 1.2569 0.4301 0.4733 0.022*
H8B 1.3797 0.4028 0.3809 0.022*
C9 1.3146 (2) 0.50761 (8) 0.36994 (11) 0.0167 (3)
C10 1.4672 (2) 0.52084 (8) 0.30438 (11) 0.0186 (3)
H10 1.5329 0.4834 0.2737 0.022*
C11 1.5239 (3) 0.58827 (8) 0.28352 (12) 0.0212 (3)
H11 1.6290 0.5967 0.2393 0.025*
C12 1.4274 (3) 0.64340 (8) 0.32713 (12) 0.0217 (3)
H12 1.4663 0.6894 0.3129 0.026*
C13 1.2733 (3) 0.63085 (8) 0.39186 (12) 0.0217 (3)
H13 1.2065 0.6684 0.4217 0.026*
C14 1.2175 (2) 0.56349 (8) 0.41276 (11) 0.0204 (3)
H14 1.1120 0.5553 0.4568 0.025*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S1 0.0266 (2) 0.0239 (2) 0.01970 (19) 0.00074 (14) 0.00326 (14) 0.00408 (13)
S2 0.01503 (17) 0.01798 (18) 0.01359 (17) −0.00058 (12) −0.00020 (12) 0.00121 (11)
S3 0.02006 (18) 0.0231 (2) 0.0235 (2) 0.00380 (13) −0.00161 (14) 0.00613 (14)
N1 0.0182 (6) 0.0174 (6) 0.0126 (5) 0.0008 (4) 0.0012 (4) 0.0017 (4)
N2 0.0183 (6) 0.0169 (6) 0.0151 (5) −0.0003 (5) 0.0005 (4) 0.0031 (4)
C1 0.0414 (10) 0.0315 (9) 0.0169 (7) 0.0162 (7) 0.0005 (7) −0.0005 (6)
C2 0.0237 (8) 0.0413 (10) 0.0227 (8) 0.0135 (7) −0.0043 (6) −0.0136 (7)
C3 0.0194 (7) 0.0290 (8) 0.0188 (7) −0.0013 (6) 0.0030 (5) −0.0106 (6)
C4 0.0180 (6) 0.0198 (7) 0.0145 (6) −0.0010 (5) 0.0028 (5) −0.0048 (5)
C5 0.0180 (6) 0.0176 (6) 0.0157 (6) −0.0028 (5) 0.0041 (5) −0.0016 (5)
C6 0.0237 (7) 0.0184 (7) 0.0254 (7) −0.0028 (6) 0.0025 (6) 0.0057 (6)
C7 0.0160 (6) 0.0190 (6) 0.0139 (6) 0.0016 (5) 0.0044 (5) −0.0009 (5)
C8 0.0153 (6) 0.0211 (7) 0.0162 (6) 0.0000 (5) −0.0008 (5) 0.0001 (5)
C9 0.0136 (6) 0.0208 (7) 0.0130 (6) 0.0006 (5) −0.0023 (5) −0.0002 (5)
C10 0.0168 (6) 0.0221 (7) 0.0161 (6) 0.0031 (5) 0.0023 (5) −0.0032 (5)
C11 0.0201 (7) 0.0270 (8) 0.0171 (7) −0.0013 (6) 0.0056 (5) 0.0003 (6)
C12 0.0229 (7) 0.0215 (7) 0.0186 (7) 0.0000 (6) 0.0007 (6) 0.0014 (6)
C13 0.0234 (7) 0.0217 (7) 0.0194 (7) 0.0051 (6) 0.0038 (6) −0.0023 (5)
C14 0.0191 (7) 0.0267 (8) 0.0161 (6) 0.0026 (6) 0.0055 (5) −0.0007 (5)

Geometric parameters (Å, º)

S1—C1 1.7139 (17) C6—H6A 0.9800
S1—C4 1.7164 (15) C6—H6B 0.9800
S2—C7 1.7610 (15) C6—H6C 0.9800
S2—C8 1.8188 (14) C8—C9 1.504 (2)
S3—C7 1.6594 (14) C8—H8A 0.9900
N1—C5 1.2876 (18) C8—H8B 0.9900
N1—N2 1.3821 (16) C9—C10 1.3960 (19)
N2—C7 1.3615 (18) C9—C14 1.398 (2)
N2—C6 1.4597 (18) C10—C11 1.391 (2)
C1—C2 1.362 (3) C10—H10 0.9500
C1—H1 0.9500 C11—C12 1.389 (2)
C2—C3 1.412 (2) C11—H11 0.9500
C2—H2 0.9500 C12—C13 1.393 (2)
C3—C4 1.3915 (19) C12—H12 0.9500
C3—H3 0.9500 C13—C14 1.388 (2)
C4—C5 1.443 (2) C13—H13 0.9500
C5—H5 0.9500 C14—H14 0.9500
C1—S1—C4 91.75 (8) N2—C7—S3 123.41 (11)
C7—S2—C8 101.72 (7) N2—C7—S2 112.87 (10)
C5—N1—N2 118.12 (12) S3—C7—S2 123.72 (8)
C7—N2—N1 115.86 (11) C9—C8—S2 107.34 (9)
C7—N2—C6 123.27 (12) C9—C8—H8A 110.2
N1—N2—C6 120.86 (11) S2—C8—H8A 110.2
C2—C1—S1 112.07 (13) C9—C8—H8B 110.2
C2—C1—H1 124.0 S2—C8—H8B 110.2
S1—C1—H1 124.0 H8A—C8—H8B 108.5
C1—C2—C3 112.96 (14) C10—C9—C14 118.61 (14)
C1—C2—H2 123.5 C10—C9—C8 120.07 (13)
C3—C2—H2 123.5 C14—C9—C8 121.30 (13)
C4—C3—C2 111.92 (15) C11—C10—C9 120.62 (13)
C4—C3—H3 124.0 C11—C10—H10 119.7
C2—C3—H3 124.0 C9—C10—H10 119.7
C3—C4—C5 126.83 (14) C12—C11—C10 120.22 (14)
C3—C4—S1 111.30 (11) C12—C11—H11 119.9
C5—C4—S1 121.87 (11) C10—C11—H11 119.9
N1—C5—C4 119.83 (13) C11—C12—C13 119.67 (14)
N1—C5—H5 120.1 C11—C12—H12 120.2
C4—C5—H5 120.1 C13—C12—H12 120.2
N2—C6—H6A 109.5 C14—C13—C12 119.97 (14)
N2—C6—H6B 109.5 C14—C13—H13 120.0
H6A—C6—H6B 109.5 C12—C13—H13 120.0
N2—C6—H6C 109.5 C13—C14—C9 120.90 (13)
H6A—C6—H6C 109.5 C13—C14—H14 119.6
H6B—C6—H6C 109.5 C9—C14—H14 119.6
C5—N1—N2—C7 −171.17 (12) C6—N2—C7—S2 −175.83 (11)
C5—N1—N2—C6 9.13 (19) C8—S2—C7—N2 177.56 (10)
C4—S1—C1—C2 0.23 (13) C8—S2—C7—S3 −1.90 (10)
S1—C1—C2—C3 −0.11 (18) C7—S2—C8—C9 −178.59 (9)
C1—C2—C3—C4 −0.10 (19) S2—C8—C9—C10 −102.29 (13)
C2—C3—C4—C5 −178.82 (13) S2—C8—C9—C14 79.22 (14)
C2—C3—C4—S1 0.27 (16) C14—C9—C10—C11 0.9 (2)
C1—S1—C4—C3 −0.28 (12) C8—C9—C10—C11 −177.58 (13)
C1—S1—C4—C5 178.86 (12) C9—C10—C11—C12 −0.5 (2)
N2—N1—C5—C4 −176.07 (12) C10—C11—C12—C13 0.0 (2)
C3—C4—C5—N1 −172.02 (13) C11—C12—C13—C14 0.2 (2)
S1—C4—C5—N1 8.98 (19) C12—C13—C14—C9 0.2 (2)
N1—N2—C7—S3 −176.06 (9) C10—C9—C14—C13 −0.8 (2)
C6—N2—C7—S3 3.63 (19) C8—C9—C14—C13 177.73 (13)
N1—N2—C7—S2 4.48 (15)

Hydrogen-bond geometry (Å, º)

Cg1 and Cg2 are the centroids of the S1,C1–C4 and C9–C14 rings, respectively.

D—H···A D—H H···A D···A D—H···A
C6—H6A···Cg1i 0.98 2.85 3.4021 (17) 117
C8—H8A···Cg2ii 0.99 2.80 3.4795 (15) 127

Symmetry codes: (i) x+1/2, −y+1/2, z+1/2; (ii) −x+3, −y+1, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HG5198).

References

  1. Agilent (2011). CrysAlis PRO Agilent Technologies, Yarnton, England.
  2. Brandenburg, K. (2006). DIAMOND Crystal Impact GbR, Bonn, Germany.
  3. Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.
  4. Hazari, S. K. S., Dey, B. K., Palit, D., Ganguli, B. & Sen, K. (2002). Ceylon J. Sci. Phys. Sci 9, 23–30.
  5. Scovill, J. P. & Silverton, J. V. (1980). J. Org. Chem. 45, 4372–4376.
  6. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  7. Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812012652/hg5198sup1.cif

e-68-o1216-sup1.cif (17.6KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812012652/hg5198Isup2.hkl

e-68-o1216-Isup2.hkl (145.2KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812012652/hg5198Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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