Abstract
Aromatic π–π stacking interactions stabilize the crystal structure of the title compound, C10H12N2O3, the perpendicular distance between parallel planes being 3.7721 (8) Å. The morpholine ring adopts a chair comformation.
Related literature
For the biological activity and synthesis of 4-(4-nitrophenyl)morpholine derivatives, see: Wang et al. (2010 ▶). For a related structure, see: Yang et al. (2011 ▶).
Experimental
Crystal data
C10H12N2O3
M r = 208.22
Orthorhombic,
a = 14.5445 (6) Å
b = 8.3832 (3) Å
c = 16.2341 (6) Å
V = 1979.42 (13) Å3
Z = 8
Mo Kα radiation
μ = 0.11 mm−1
T = 293 K
0.35 × 0.33 × 0.30 mm
Data collection
Oxford Diffraction Xcalibur Eos diffractometer
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2006 ▶) T min = 0.992, T max = 1.000
4949 measured reflections
2023 independent reflections
1377 reflections with I > 2σ(I)
R int = 0.018
Refinement
R[F 2 > 2σ(F 2)] = 0.048
wR(F 2) = 0.121
S = 1.03
2023 reflections
184 parameters
All H-atom parameters refined
Δρmax = 0.12 e Å−3
Δρmin = −0.15 e Å−3
Data collection: CrysAlis PRO (Oxford Diffraction, 2006 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: OLEX2.
Supplementary Material
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812012172/kj2195sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812012172/kj2195Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812012172/kj2195Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Acknowledgments
We thank the Analytical and Testing Center of Sichuan University for the X-ray measurements.
supplementary crystallographic information
Comment
4-(4-nitrophenyl)morpholine derivatives are of great importance due to their anticancer activity (Wang et al., 2010;). The title compound is one of the key intermediates in our synthetic investigations of antitumor drugs. We synthesized the title compound and report its crystal structure in this paper.
In the title compound, C10H12N2O3, (Fig. 1) the bond lengths and angles are within normal ranges (Yang et al., 2011). Aromatic π–π stacking interactions help to stabilize the crystal structure (Fig. 2). The perpendicular distance between the parallel ring planes is 3.7721 (8) Å, the distance between the centres of gravity Cg—Cg(-x,-y,1 - z) is 3.8499 (11) Å.
Experimental
The title compound was prepared by a method similar to that of Shudong Wang et al. (2010), which Crystals suitable for X-ray analysis were obtained by slow evaporation from a solution of dichloromethane.
Refinement
All H atoms were positioned in the difference map and refined freely.
Figures
Fig. 1.
The molecular structure of the title compound, with displacement ellipsoids drawn at the 30% probability level.
Fig. 2.
A packing diagram of the title compound. The dotted line indicates the Cg—Cg(-x,-y,1 - z) distance.
Crystal data
| C10H12N2O3 | Dx = 1.397 Mg m−3 |
| Mr = 208.22 | Mo Kα radiation, λ = 0.71073 Å |
| Orthorhombic, Pbca | Cell parameters from 1704 reflections |
| a = 14.5445 (6) Å | θ = 2.9–29.2° |
| b = 8.3832 (3) Å | µ = 0.11 mm−1 |
| c = 16.2341 (6) Å | T = 293 K |
| V = 1979.42 (13) Å3 | Block, yellow |
| Z = 8 | 0.35 × 0.33 × 0.30 mm |
| F(000) = 880 |
Data collection
| Oxford Diffraction Xcalibur Eos diffractometer | 2023 independent reflections |
| Radiation source: Enhance (Mo) X-ray Source | 1377 reflections with I > 2σ(I) |
| Graphite monochromator | Rint = 0.018 |
| Detector resolution: 16.0874 pixels mm-1 | θmax = 26.4°, θmin = 2.9° |
| ω scans | h = −9→18 |
| Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2006) | k = −6→10 |
| Tmin = 0.992, Tmax = 1.000 | l = −20→12 |
| 4949 measured reflections |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.048 | Hydrogen site location: difference Fourier map |
| wR(F2) = 0.121 | All H-atom parameters refined |
| S = 1.03 | w = 1/[σ2(Fo2) + (0.050P)2 + 0.3012P] where P = (Fo2 + 2Fc2)/3 |
| 2023 reflections | (Δ/σ)max < 0.001 |
| 184 parameters | Δρmax = 0.12 e Å−3 |
| 0 restraints | Δρmin = −0.15 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| O1 | 0.11977 (11) | 0.40333 (15) | 0.24876 (9) | 0.0774 (5) | |
| O2 | 0.15361 (12) | −0.3154 (2) | 0.66760 (10) | 0.0931 (6) | |
| O3 | 0.09389 (13) | −0.47156 (17) | 0.57725 (10) | 0.0907 (6) | |
| N1 | 0.12607 (10) | 0.15429 (16) | 0.36653 (8) | 0.0488 (4) | |
| N2 | 0.12312 (11) | −0.3406 (2) | 0.59853 (11) | 0.0642 (5) | |
| C1 | 0.17590 (18) | 0.4172 (3) | 0.31932 (13) | 0.0674 (6) | |
| H1A | 0.2408 (16) | 0.378 (2) | 0.3051 (12) | 0.083 (7)* | |
| H1B | 0.1775 (14) | 0.531 (2) | 0.3339 (12) | 0.072 (6)* | |
| C2 | 0.14099 (17) | 0.3205 (2) | 0.39042 (13) | 0.0587 (5) | |
| H2A | 0.1869 (14) | 0.327 (2) | 0.4354 (12) | 0.067 (6)* | |
| H2B | 0.0823 (14) | 0.367 (2) | 0.4102 (12) | 0.068 (6)* | |
| C3 | 0.07821 (15) | 0.1361 (3) | 0.28780 (11) | 0.0567 (5) | |
| H3A | 0.0113 (15) | 0.159 (2) | 0.2958 (12) | 0.081 (7)* | |
| H3B | 0.0813 (13) | 0.028 (2) | 0.2697 (11) | 0.064 (6)* | |
| C4 | 0.11879 (17) | 0.2413 (2) | 0.22354 (13) | 0.0647 (5) | |
| H4A | 0.0814 (13) | 0.237 (2) | 0.1743 (13) | 0.072 (6)* | |
| H4B | 0.1848 (14) | 0.205 (2) | 0.2122 (12) | 0.077 (6)* | |
| C5 | 0.12154 (11) | 0.03660 (19) | 0.42504 (10) | 0.0440 (4) | |
| C6 | 0.08684 (14) | −0.1153 (2) | 0.40613 (12) | 0.0589 (5) | |
| H6 | 0.0618 (13) | −0.137 (2) | 0.3546 (12) | 0.069 (6)* | |
| C7 | 0.08671 (14) | −0.2364 (2) | 0.46268 (12) | 0.0598 (5) | |
| H7 | 0.0634 (14) | −0.340 (2) | 0.4490 (12) | 0.078 (6)* | |
| C8 | 0.12173 (12) | −0.2108 (2) | 0.54007 (11) | 0.0501 (4) | |
| C9 | 0.15440 (14) | −0.0625 (2) | 0.56225 (12) | 0.0563 (5) | |
| H9 | 0.1773 (13) | −0.045 (2) | 0.6160 (13) | 0.065 (6)* | |
| C10 | 0.15375 (13) | 0.0592 (2) | 0.50585 (11) | 0.0536 (5) | |
| H10 | 0.1772 (13) | 0.161 (2) | 0.5228 (11) | 0.064 (5)* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O1 | 0.1061 (12) | 0.0596 (8) | 0.0664 (9) | 0.0081 (8) | −0.0178 (9) | 0.0111 (7) |
| O2 | 0.1083 (13) | 0.0960 (12) | 0.0748 (11) | −0.0164 (10) | −0.0257 (10) | 0.0297 (9) |
| O3 | 0.1163 (13) | 0.0583 (9) | 0.0974 (12) | −0.0137 (9) | −0.0058 (10) | 0.0163 (8) |
| N1 | 0.0586 (9) | 0.0459 (7) | 0.0418 (8) | −0.0054 (7) | −0.0048 (7) | −0.0049 (6) |
| N2 | 0.0576 (10) | 0.0686 (11) | 0.0665 (11) | 0.0035 (9) | 0.0008 (9) | 0.0131 (9) |
| C1 | 0.0868 (16) | 0.0538 (12) | 0.0615 (13) | −0.0091 (12) | −0.0020 (12) | 0.0044 (10) |
| C2 | 0.0720 (13) | 0.0498 (10) | 0.0544 (11) | −0.0060 (10) | 0.0003 (11) | −0.0067 (9) |
| C3 | 0.0624 (13) | 0.0599 (12) | 0.0477 (11) | −0.0024 (10) | −0.0086 (9) | −0.0048 (9) |
| C4 | 0.0829 (15) | 0.0636 (12) | 0.0478 (11) | 0.0061 (12) | −0.0116 (11) | 0.0029 (9) |
| C5 | 0.0428 (9) | 0.0475 (8) | 0.0418 (9) | −0.0013 (8) | 0.0019 (7) | −0.0054 (7) |
| C6 | 0.0722 (13) | 0.0569 (11) | 0.0476 (11) | −0.0143 (10) | −0.0093 (10) | −0.0055 (9) |
| C7 | 0.0682 (12) | 0.0497 (10) | 0.0617 (12) | −0.0106 (10) | −0.0015 (10) | −0.0030 (9) |
| C8 | 0.0467 (9) | 0.0521 (9) | 0.0514 (10) | 0.0024 (8) | 0.0028 (8) | 0.0037 (8) |
| C9 | 0.0626 (12) | 0.0622 (11) | 0.0443 (10) | −0.0015 (9) | −0.0044 (9) | −0.0042 (8) |
| C10 | 0.0656 (11) | 0.0495 (9) | 0.0458 (10) | −0.0081 (9) | −0.0035 (9) | −0.0069 (8) |
Geometric parameters (Å, º)
| O1—C1 | 1.411 (2) | C3—H3B | 0.958 (19) |
| O1—C4 | 1.418 (2) | C3—C4 | 1.488 (3) |
| O2—N2 | 1.224 (2) | C4—H4A | 0.97 (2) |
| O3—N2 | 1.227 (2) | C4—H4B | 1.02 (2) |
| N1—C2 | 1.463 (2) | C5—C6 | 1.404 (2) |
| N1—C3 | 1.463 (2) | C5—C10 | 1.406 (2) |
| N1—C5 | 1.371 (2) | C6—H6 | 0.93 (2) |
| N2—C8 | 1.444 (2) | C6—C7 | 1.369 (3) |
| C1—H1A | 1.03 (2) | C7—H7 | 0.96 (2) |
| C1—H1B | 0.98 (2) | C7—C8 | 1.373 (3) |
| C1—C2 | 1.499 (3) | C8—C9 | 1.378 (2) |
| C2—H2A | 0.99 (2) | C9—H9 | 0.95 (2) |
| C2—H2B | 0.99 (2) | C9—C10 | 1.371 (3) |
| C3—H3A | 1.00 (2) | C10—H10 | 0.957 (18) |
| C1—O1—C4 | 108.61 (15) | O1—C4—C3 | 111.68 (18) |
| C2—N1—C3 | 113.67 (15) | O1—C4—H4A | 106.5 (11) |
| C5—N1—C2 | 120.60 (14) | O1—C4—H4B | 109.0 (11) |
| C5—N1—C3 | 120.47 (14) | C3—C4—H4A | 109.4 (11) |
| O2—N2—O3 | 122.50 (17) | C3—C4—H4B | 108.9 (11) |
| O2—N2—C8 | 118.51 (17) | H4A—C4—H4B | 111.5 (16) |
| O3—N2—C8 | 118.98 (17) | N1—C5—C6 | 121.23 (15) |
| O1—C1—H1A | 108.8 (12) | N1—C5—C10 | 122.24 (15) |
| O1—C1—H1B | 106.8 (11) | C6—C5—C10 | 116.50 (16) |
| O1—C1—C2 | 112.60 (18) | C5—C6—H6 | 121.2 (12) |
| H1A—C1—H1B | 110.1 (17) | C7—C6—C5 | 121.78 (18) |
| C2—C1—H1A | 108.2 (12) | C7—C6—H6 | 117.0 (12) |
| C2—C1—H1B | 110.3 (12) | C6—C7—H7 | 121.1 (12) |
| N1—C2—C1 | 111.18 (17) | C6—C7—C8 | 119.81 (18) |
| N1—C2—H2A | 110.4 (11) | C8—C7—H7 | 119.1 (12) |
| N1—C2—H2B | 109.4 (11) | C7—C8—N2 | 119.25 (17) |
| C1—C2—H2A | 108.0 (11) | C7—C8—C9 | 120.55 (17) |
| C1—C2—H2B | 109.2 (11) | C9—C8—N2 | 120.20 (17) |
| H2A—C2—H2B | 108.6 (16) | C8—C9—H9 | 120.3 (11) |
| N1—C3—H3A | 109.2 (12) | C10—C9—C8 | 119.62 (18) |
| N1—C3—H3B | 110.2 (11) | C10—C9—H9 | 120.1 (11) |
| N1—C3—C4 | 111.20 (16) | C5—C10—H10 | 120.4 (11) |
| H3A—C3—H3B | 105.7 (16) | C9—C10—C5 | 121.68 (17) |
| C4—C3—H3A | 111.2 (12) | C9—C10—H10 | 117.9 (11) |
| C4—C3—H3B | 109.2 (11) |
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: KJ2195).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812012172/kj2195sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812012172/kj2195Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812012172/kj2195Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


