Abstract
In the crystal structure of the title compound, C5H8N2O, molecules are linked via pairs of N—H⋯O hydrogen bonds, forming inversion dimers. These dimers are linked via pairs of N—H⋯H hydrogen bonds into zigzag chains propagating along [101].
Related literature
For the synthesis of the title compound, see: Zhang et al. (2011 ▶). For standard bond-length data, see: Allen et al. (1987 ▶).
Experimental
Crystal data
C5H8N2O
M r = 112.13
Triclinic,
a = 5.8916 (12) Å
b = 6.4349 (14) Å
c = 9.1263 (19) Å
α = 95.659 (4)°
β = 102.379 (4)°
γ = 109.859 (4)°
V = 312.27 (11) Å3
Z = 2
Mo Kα radiation
μ = 0.09 mm−1
T = 293 K
0.20 × 0.18 × 0.15 mm
Data collection
Enraf–Nonius CAD-4 diffractometer
Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.983, T max = 0.987
1699 measured reflections
1077 independent reflections
1000 reflections with I > 2σ(I)
R int = 0.021
3 standard reflections every 200 reflections intensity decay: 1%
Refinement
R[F 2 > 2σ(F 2)] = 0.050
wR(F 2) = 0.143
S = 1.05
1077 reflections
84 parameters
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.26 e Å−3
Δρmin = −0.26 e Å−3
Data collection: CAD-4 Software (Enraf–Nonius, 1985 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812013360/su2395sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812013360/su2395Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812013360/su2395Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N1—H1A⋯O1i | 0.92 (2) | 2.07 (2) | 2.9714 (18) | 168.2 (18) |
| N1—H1B⋯N2ii | 0.874 (18) | 2.328 (18) | 3.166 (2) | 160.8 (19) |
Symmetry codes: (i)
; (ii)
.
Acknowledgments
The authors thank the Center of Testing and Analysis, Nanjing University, for the data collection. They also thank the Foundation of Yancheng Institute of Technology (XKR2010055) and the National Natural Science Foundation of China (No. 31000142) for financial support.
supplementary crystallographic information
Comment
The title compound has attracted considerable attention in drug research because of its outstanding biological activity. In recent years it has been used as an imtermediate in the synthesis of the high blood pressure rennin inhibitor, Aliskiren (Zhang et al., 2011).
The molecular structure of the title compound is shown in Fig. 1. The bond lengths (Allen et al., 1987) and angles are within normal ranges.
In the crystal, molecules are connected via pairs of N—H···O hydrogen bonds to form inversion dimers (Table 1 and Fig. 2). These dimers are connected via pairs of N—H···N hydrogen bonds resulting in the formation of zigzag chains (Table 1 and Fig. 2), propagating along direction [101].
Experimental
The title compound was prepared by the literature procedure (Zhang et al., 2011). To a solution of methyl 2-cyano-2-methylpropanoate (5 g, 39.3 mmol) in methanol (20 ml), ammonia was added slowly at room temperature. After being stirred for 18 h at the room tempreature, a yellow solid was obtained. It was dissolved in ethanol and colourless block-like crystals of the title compound, suitable for X-ray diffraction analysis, were obtained by slow evaporation of the solvent over 7 days.
Refinement
The NH2 H atoms were located in a difference electron density map and refined freely. The methyl H atoms were positioned geometrically and constrained to ride on their parent atoms: C—H = 0.96 Å with Uiso(H) = 1.5Ueq(C).
Figures
Fig. 1.
The molecular structure of the title molecule, with atom-numbering. Displacement ellipsoids are drawn at the 35% probability level.
Fig. 2.
A view along the b axis of the crystal packing of the title compound. The N—H···O and N—H···N hydrogen bonds are shown as dashed lines (see Table 1 for details).
Crystal data
| C5H8N2O | Z = 2 |
| Mr = 112.13 | F(000) = 120 |
| Triclinic, P1 | Dx = 1.193 Mg m−3 |
| Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
| a = 5.8916 (12) Å | Cell parameters from 1603 reflections |
| b = 6.4349 (14) Å | θ = 2.3–30.1° |
| c = 9.1263 (19) Å | µ = 0.09 mm−1 |
| α = 95.659 (4)° | T = 293 K |
| β = 102.379 (4)° | Block, colourless |
| γ = 109.859 (4)° | 0.20 × 0.18 × 0.15 mm |
| V = 312.27 (11) Å3 |
Data collection
| Enraf–Nonius CAD-4 diffractometer | 1000 reflections with I > 2σ(I) |
| Radiation source: fine-focus sealed tube | Rint = 0.021 |
| Graphite monochromator | θmax = 25.0°, θmin = 2.3° |
| ω/2θ scans | h = −6→6 |
| Absorption correction: ψ scan (North et al., 1968) | k = −6→7 |
| Tmin = 0.983, Tmax = 0.987 | l = −10→7 |
| 1699 measured reflections | 3 standard reflections every 200 reflections |
| 1077 independent reflections | intensity decay: 1% |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.050 | H atoms treated by a mixture of independent and constrained refinement |
| wR(F2) = 0.143 | w = 1/[σ2(Fo2) + (0.1061P)2 + 0.0265P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.05 | (Δ/σ)max < 0.001 |
| 1077 reflections | Δρmax = 0.26 e Å−3 |
| 84 parameters | Δρmin = −0.26 e Å−3 |
| 0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 2.05 (18) |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| O1 | 0.29396 (18) | 0.69885 (17) | 0.01288 (11) | 0.0555 (4) | |
| N1 | 0.2126 (2) | 0.51350 (19) | 0.20281 (15) | 0.0495 (5) | |
| N2 | 0.7598 (2) | 0.6725 (2) | 0.48798 (16) | 0.0644 (5) | |
| C1 | 0.6955 (2) | 0.7399 (2) | 0.38232 (15) | 0.0448 (5) | |
| C2 | 0.6156 (2) | 0.83173 (18) | 0.24687 (13) | 0.0364 (4) | |
| C3 | 0.8132 (2) | 0.8719 (2) | 0.15614 (16) | 0.0479 (5) | |
| H3A | 0.9726 | 0.9721 | 0.2208 | 0.072* | |
| H3B | 0.7658 | 0.9376 | 0.0703 | 0.072* | |
| H3C | 0.8246 | 0.7312 | 0.1206 | 0.072* | |
| C4 | 0.5862 (3) | 1.0547 (2) | 0.29886 (16) | 0.0494 (5) | |
| H4A | 0.4580 | 1.0266 | 0.3521 | 0.074* | |
| H4B | 0.5407 | 1.1176 | 0.2112 | 0.074* | |
| H4C | 0.7418 | 1.1586 | 0.3656 | 0.074* | |
| C5 | 0.3573 (2) | 0.66995 (19) | 0.14359 (14) | 0.0381 (4) | |
| H1A | 0.059 (4) | 0.429 (3) | 0.138 (2) | 0.069 (5)* | |
| H1B | 0.254 (4) | 0.491 (3) | 0.296 (2) | 0.064 (5)* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O1 | 0.0468 (7) | 0.0567 (7) | 0.0374 (6) | −0.0025 (5) | −0.0094 (4) | 0.0185 (5) |
| N1 | 0.0391 (7) | 0.0511 (8) | 0.0394 (7) | 0.0004 (5) | −0.0051 (5) | 0.0174 (5) |
| N2 | 0.0506 (8) | 0.0740 (9) | 0.0501 (8) | 0.0094 (6) | −0.0086 (6) | 0.0274 (7) |
| C1 | 0.0344 (7) | 0.0472 (7) | 0.0392 (8) | 0.0058 (5) | −0.0033 (5) | 0.0101 (6) |
| C2 | 0.0332 (7) | 0.0376 (7) | 0.0308 (7) | 0.0087 (5) | −0.0002 (5) | 0.0073 (5) |
| C3 | 0.0390 (7) | 0.0570 (8) | 0.0438 (8) | 0.0150 (6) | 0.0075 (6) | 0.0102 (6) |
| C4 | 0.0487 (8) | 0.0470 (8) | 0.0447 (8) | 0.0170 (6) | 0.0013 (6) | 0.0001 (6) |
| C5 | 0.0360 (7) | 0.0366 (7) | 0.0328 (7) | 0.0086 (5) | −0.0018 (5) | 0.0087 (5) |
Geometric parameters (Å, º)
| O1—C5 | 1.2234 (16) | C2—C5 | 1.5504 (15) |
| N1—C5 | 1.3243 (17) | C3—H3A | 0.9600 |
| N1—H1A | 0.92 (2) | C3—H3B | 0.9600 |
| N1—H1B | 0.88 (2) | C3—H3C | 0.9600 |
| N2—C1 | 1.1395 (18) | C4—H4A | 0.9600 |
| C1—C2 | 1.4774 (17) | C4—H4B | 0.9600 |
| C2—C3 | 1.5356 (18) | C4—H4C | 0.9600 |
| C2—C4 | 1.5438 (18) | ||
| C5—N1—H1A | 114.6 (12) | C2—C3—H3C | 109.5 |
| C5—N1—H1B | 124.9 (12) | H3A—C3—H3C | 109.5 |
| H1A—N1—H1B | 120.5 (18) | H3B—C3—H3C | 109.5 |
| N2—C1—C2 | 178.86 (14) | C2—C4—H4A | 109.5 |
| C1—C2—C3 | 109.07 (10) | C2—C4—H4B | 109.5 |
| C1—C2—C4 | 109.37 (10) | H4A—C4—H4B | 109.5 |
| C3—C2—C4 | 110.22 (10) | C2—C4—H4C | 109.5 |
| C1—C2—C5 | 111.37 (9) | H4A—C4—H4C | 109.5 |
| C3—C2—C5 | 109.91 (10) | H4B—C4—H4C | 109.5 |
| C4—C2—C5 | 106.88 (10) | O1—C5—N1 | 123.35 (11) |
| C2—C3—H3A | 109.5 | O1—C5—C2 | 118.09 (10) |
| C2—C3—H3B | 109.5 | N1—C5—C2 | 118.50 (10) |
| H3A—C3—H3B | 109.5 | ||
| N2—C1—C2—C3 | 78 (8) | C4—C2—C5—O1 | 76.58 (15) |
| N2—C1—C2—C4 | −42 (8) | C1—C2—C5—N1 | 18.55 (16) |
| N2—C1—C2—C5 | −160 (8) | C3—C2—C5—N1 | 139.54 (12) |
| C1—C2—C5—O1 | −164.02 (12) | C4—C2—C5—N1 | −100.85 (14) |
| C3—C2—C5—O1 | −43.03 (15) |
Hydrogen-bond geometry (Å, º)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N1—H1A···O1i | 0.92 (2) | 2.07 (2) | 2.9714 (18) | 168.2 (18) |
| N1—H1B···N2ii | 0.874 (18) | 2.328 (18) | 3.166 (2) | 160.8 (19) |
Symmetry codes: (i) −x, −y+1, −z; (ii) −x+1, −y+1, −z+1.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: SU2395).
References
- Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19.
- Enraf–Nonius (1985). CAD-4 Software Enraf–Nonius, Delft, The Netherlands.
- Harms, K. & Wocadlo, S. (1995). XCAD4 University of Marburg, Germany.
- North, A. C. T., Phillips, D. C. & Mathews, F. S. (1968). Acta Cryst. A24, 351–359.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Zhang, W. L., Wang, P. & Gan, L. X. (2011). Patent Pub. No. WO/2011/091677; Int. Appl. No. PCT/CN2010/078549.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812013360/su2395sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812013360/su2395Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812013360/su2395Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


