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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Apr 4;68(Pt 5):m533. doi: 10.1107/S1600536812013505

Diaqua­bis­(1-methyl-1H-imidazole-κN 3)bis­[2-(naphthalen-1-yl)acetato-κO]cobalt(II)

Hong Zhao a, Fu-Jun Yin b,*, Xing-You Xu c, Li-Jun Han d
PMCID: PMC3344294  PMID: 22590060

Abstract

In the title compound, [Co(C12H9O2)2(C4H6N2)2(H2O)2], the CoII ion is located on an inversion centre and displays a distorted octa­hedral coordination geometry. Two O atoms from two water mol­ecules and two carboxyl­ate O atoms from two 2-(naphthalen-1-yl)acetate ligands are in the equatorial plane and two N atoms from two 1-methyl-1H-imidazole ligands are in the axial positions. The structure is stabilized by intra­molecular O—H⋯O hydrogen bonds. Inter­molecular O—H⋯O hydrogen bonds link the complex mol­ecules into chains along [100].

Related literature  

For the structures of related complexes with 2-(naphthalen-1-yl)acetate ligands, see: Duan et al. (2007); Ji et al. (2011); Tang et al. (2006); Yang et al. (2008); Yin et al. (2011).graphic file with name e-68-0m533-scheme1.jpg

Experimental  

Crystal data  

  • [Co(C12H9O2)2(C4H6N2)2(H2O)2]

  • M r = 629.56

  • Monoclinic, Inline graphic

  • a = 7.3384 (7) Å

  • b = 24.582 (2) Å

  • c = 8.8559 (8) Å

  • β = 111.158 (1)°

  • V = 1489.8 (2) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.63 mm−1

  • T = 298 K

  • 0.34 × 0.30 × 0.20 mm

Data collection  

  • Bruker APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.815, T max = 0.885

  • 13335 measured reflections

  • 3356 independent reflections

  • 2865 reflections with I > 2σ(I)

  • R int = 0.024

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.032

  • wR(F 2) = 0.084

  • S = 1.05

  • 3356 reflections

  • 203 parameters

  • 2 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.25 e Å−3

  • Δρmin = −0.28 e Å−3

Data collection: APEX2 (Bruker, 2007); cell refinement: SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg, 1999); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812013505/hy2522sup1.cif

e-68-0m533-sup1.cif (19.5KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812013505/hy2522Isup2.hkl

e-68-0m533-Isup2.hkl (161.3KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O3—H3A⋯O2i 0.84 (2) 2.13 (2) 2.8523 (18) 144 (2)
O3—H3B⋯O2 0.85 (2) 1.81 (2) 2.6463 (16) 168 (2)

Symmetry code: (i) Inline graphic.

Acknowledgments

The authors thank Jiangsu Marine Resources Development Research Institute and Huaihai Institute of Technology for support of this work.

supplementary crystallographic information

Comment

In recent years 2-(naphthalen-1-yl)acetate ligand has attracted many interests in coordination chemistry due to its ability to form metal complexes (Duan et al., 2007; Ji et al., 2011; Tang et al., 2006; Yang et al., 2008; Yin et al., 2011). The crystal structure of the title compound was determined as part of an ongoing study of the properties of cobalt complexes containing imidazole ligands.

In the title compound (Fig. 1), the CoII ion is located on an inversion centre and displays a distorted octahedral coordination geometry. Two O atoms from two water molecules and two carboxylate O atoms from two 2-(naphthalen-1-yl)acetate ligands are in the equatorial plane and two N atoms from two N-methylimidazole ligands are in the axial positions. The structure is stabilized by intramolecular O—H···O hydrogen bonds (Table 1). In the crystal, intermolecular O—H···O hydrogen bonds link the complex molecules into chains along [100] (Fig. 2).

Experimental

The title compound was synthesized by the reaction of CoCl2.6H2O (71.3 mg, 0.3 mmol), 2-(naphthalen-1-yl)acetic acid (93 mg, 0.5 mmol), N-methylimidazole (32.8 mg, 0.4 mmol) and NaOH (20 mg, 0.5 mmol) in 15 ml of a water-ethanol mixture (v/v 1:1) under solvothermal conditions. The starting mixture was homogenized and transferred into a sealed Teflon-lined bomb (25 ml) and heated at 140° C for three days. After cooling, red crystals of the title compound were obtained, which were washed with distilled water and absolute ethyl alcohol (yield: 26.8% based on Co).

Refinement

H atoms attached to C atoms were placed in calculated positions and refined as riding atoms, with C—H = 0.93 (CH), 0.97 (CH2) and 0.96 (CH3) Å and with Uiso(H) = 1.2(1.5 for methyl)Ueq(C). The water H atoms were located in a difference Fourier map and refined with a restraint of O—H = 0.85 (1) Å and with Uiso(H) = 1.5Ueq(O).

Figures

Fig. 1.

Fig. 1.

Molecular structure of the title compound. Displacement ellipsoids are drawn at the 30% probability level. Hydrogen bonds are shown as dashed lines. [Symmetry code: (i) -x+1, -y+1, -z.]

Fig. 2.

Fig. 2.

Part of the chain structure of the title compound. Hydrogen bonds are shown as dashed lines. H atoms not involved in hydrogen bonds are omitted for clarity.

Crystal data

[Co(C12H9O2)2(C4H6N2)2(H2O)2] F(000) = 658
Mr = 629.56 Dx = 1.403 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 3356 reflections
a = 7.3384 (7) Å θ = 2.6–27.3°
b = 24.582 (2) Å µ = 0.63 mm1
c = 8.8559 (8) Å T = 298 K
β = 111.158 (1)° Block, red
V = 1489.8 (2) Å3 0.34 × 0.30 × 0.20 mm
Z = 2

Data collection

Bruker APEXII CCD diffractometer 3356 independent reflections
Radiation source: fine-focus sealed tube 2865 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.024
φ and ω scans θmax = 27.3°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) h = −9→9
Tmin = 0.815, Tmax = 0.885 k = −31→30
13335 measured reflections l = −11→11

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.084 H atoms treated by a mixture of independent and constrained refinement
S = 1.05 w = 1/[σ2(Fo2) + (0.0408P)2 + 0.3567P] where P = (Fo2 + 2Fc2)/3
3356 reflections (Δ/σ)max < 0.001
203 parameters Δρmax = 0.25 e Å3
2 restraints Δρmin = −0.28 e Å3

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Co1 0.5000 0.5000 0.0000 0.03250 (10)
N1 0.3651 (2) 0.49725 (5) −0.25228 (16) 0.0396 (3)
N2 0.2163 (2) 0.46891 (6) −0.50250 (16) 0.0439 (3)
O1 0.37360 (16) 0.57809 (4) 0.00491 (14) 0.0417 (3)
O2 0.14963 (16) 0.55623 (4) 0.11124 (14) 0.0429 (3)
O3 0.26123 (16) 0.46019 (5) 0.04077 (14) 0.0414 (3)
C1 0.2365 (2) 0.58909 (6) 0.05248 (17) 0.0344 (3)
C2 0.1641 (3) 0.64816 (7) 0.0303 (2) 0.0430 (4)
H2A 0.2760 0.6720 0.0518 0.052*
H2B 0.0803 0.6533 −0.0819 0.052*
C3 0.0536 (2) 0.66527 (6) 0.1363 (2) 0.0405 (4)
C4 −0.1444 (3) 0.67227 (7) 0.0715 (2) 0.0508 (4)
H4 −0.2105 0.6649 −0.0377 0.061*
C5 −0.2506 (3) 0.69042 (8) 0.1662 (3) 0.0631 (6)
H5 −0.3851 0.6951 0.1186 0.076*
C6 −0.1594 (3) 0.70103 (8) 0.3253 (3) 0.0601 (5)
H6 −0.2311 0.7136 0.3859 0.072*
C7 0.0448 (3) 0.69323 (6) 0.4006 (2) 0.0471 (4)
C8 0.1530 (2) 0.67521 (6) 0.3049 (2) 0.0393 (3)
C9 0.3577 (3) 0.66855 (7) 0.3824 (2) 0.0494 (4)
H9 0.4314 0.6567 0.3227 0.059*
C10 0.4479 (3) 0.67927 (9) 0.5436 (3) 0.0636 (5)
H10 0.5826 0.6751 0.5918 0.076*
C11 0.3404 (4) 0.69649 (8) 0.6373 (3) 0.0686 (6)
H11 0.4038 0.7034 0.7471 0.082*
C12 0.1447 (4) 0.70302 (7) 0.5682 (3) 0.0611 (5)
H12 0.0744 0.7141 0.6317 0.073*
C13 0.3534 (3) 0.53921 (7) −0.3573 (2) 0.0473 (4)
H13 0.4010 0.5742 −0.3270 0.057*
C14 0.2625 (3) 0.52220 (8) −0.5115 (2) 0.0510 (4)
H14 0.2367 0.5428 −0.6051 0.061*
C15 0.2803 (2) 0.45573 (7) −0.34511 (19) 0.0428 (4)
H15 0.2666 0.4214 −0.3062 0.051*
C16 0.1186 (3) 0.43256 (10) −0.6383 (2) 0.0617 (5)
H16A 0.2063 0.4239 −0.6932 0.093*
H16B 0.0045 0.4502 −0.7122 0.093*
H16C 0.0810 0.3997 −0.5986 0.093*
H3A 0.161 (3) 0.4468 (11) −0.029 (2) 0.093*
H3B 0.222 (4) 0.4886 (7) 0.074 (3) 0.093*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Co1 0.03202 (16) 0.03393 (16) 0.03224 (16) 0.00035 (11) 0.01242 (11) −0.00172 (11)
N1 0.0412 (7) 0.0412 (7) 0.0347 (7) 0.0010 (6) 0.0119 (6) 0.0007 (6)
N2 0.0419 (7) 0.0557 (9) 0.0331 (7) −0.0014 (6) 0.0124 (6) −0.0032 (6)
O1 0.0423 (6) 0.0395 (6) 0.0479 (6) 0.0053 (5) 0.0220 (5) 0.0010 (5)
O2 0.0454 (6) 0.0376 (6) 0.0503 (7) 0.0003 (5) 0.0230 (5) −0.0017 (5)
O3 0.0391 (6) 0.0393 (6) 0.0479 (7) −0.0033 (5) 0.0183 (5) −0.0046 (5)
C1 0.0346 (7) 0.0365 (8) 0.0287 (7) −0.0001 (6) 0.0074 (6) −0.0041 (6)
C2 0.0501 (9) 0.0376 (8) 0.0443 (9) 0.0055 (7) 0.0205 (7) 0.0026 (7)
C3 0.0441 (9) 0.0276 (7) 0.0532 (10) 0.0021 (6) 0.0218 (8) 0.0009 (6)
C4 0.0440 (9) 0.0412 (9) 0.0632 (12) 0.0005 (7) 0.0145 (8) −0.0032 (8)
C5 0.0397 (10) 0.0559 (12) 0.0970 (17) 0.0036 (8) 0.0287 (11) −0.0024 (11)
C6 0.0599 (12) 0.0485 (11) 0.0881 (16) 0.0029 (9) 0.0462 (12) −0.0084 (10)
C7 0.0602 (11) 0.0293 (8) 0.0619 (11) −0.0016 (7) 0.0343 (9) −0.0039 (7)
C8 0.0457 (9) 0.0255 (7) 0.0511 (9) −0.0002 (6) 0.0226 (7) −0.0007 (6)
C9 0.0478 (10) 0.0444 (9) 0.0567 (11) 0.0011 (7) 0.0197 (8) −0.0005 (8)
C10 0.0605 (12) 0.0554 (12) 0.0640 (13) −0.0008 (9) 0.0094 (10) 0.0010 (10)
C11 0.0946 (17) 0.0521 (12) 0.0520 (12) −0.0037 (11) 0.0180 (11) −0.0053 (9)
C12 0.0958 (17) 0.0387 (10) 0.0614 (13) −0.0015 (10) 0.0437 (12) −0.0070 (9)
C13 0.0540 (10) 0.0429 (9) 0.0455 (10) −0.0023 (8) 0.0186 (8) 0.0039 (7)
C14 0.0554 (11) 0.0575 (11) 0.0402 (9) 0.0035 (9) 0.0173 (8) 0.0105 (8)
C15 0.0467 (9) 0.0444 (9) 0.0364 (8) −0.0006 (7) 0.0141 (7) 0.0014 (7)
C16 0.0622 (12) 0.0798 (14) 0.0396 (10) −0.0100 (10) 0.0142 (9) −0.0162 (9)

Geometric parameters (Å, º)

Co1—N1 2.0928 (13) C5—H5 0.9300
Co1—O1 2.1392 (11) C6—C7 1.416 (3)
Co1—O3 2.1483 (11) C6—H6 0.9300
N1—C15 1.317 (2) C7—C12 1.419 (3)
N1—C13 1.371 (2) C7—C8 1.425 (2)
N2—C15 1.340 (2) C8—C9 1.418 (2)
N2—C14 1.363 (2) C9—C10 1.364 (3)
N2—C16 1.461 (2) C9—H9 0.9300
O1—C1 1.2528 (18) C10—C11 1.401 (3)
O2—C1 1.2525 (18) C10—H10 0.9300
O3—H3A 0.84 (2) C11—C12 1.352 (3)
O3—H3B 0.85 (2) C11—H11 0.9300
C1—C2 1.534 (2) C12—H12 0.9300
C2—C3 1.505 (2) C13—C14 1.352 (3)
C2—H2A 0.9700 C13—H13 0.9300
C2—H2B 0.9700 C14—H14 0.9300
C3—C4 1.367 (2) C15—H15 0.9300
C3—C8 1.427 (2) C16—H16A 0.9600
C4—C5 1.408 (3) C16—H16B 0.9600
C4—H4 0.9300 C16—H16C 0.9600
C5—C6 1.349 (3)
N1—Co1—N1i 180.000 (1) C6—C5—C4 120.71 (18)
N1—Co1—O1 90.52 (5) C6—C5—H5 119.6
N1i—Co1—O1 89.48 (5) C4—C5—H5 119.6
N1—Co1—O1i 89.48 (5) C5—C6—C7 120.51 (18)
N1i—Co1—O1i 90.52 (5) C5—C6—H6 119.7
O1—Co1—O1i 180.0 C7—C6—H6 119.7
N1—Co1—O3i 86.31 (5) C6—C7—C12 121.94 (18)
N1i—Co1—O3i 93.69 (5) C6—C7—C8 118.93 (17)
O1—Co1—O3i 88.89 (4) C12—C7—C8 119.13 (17)
O1i—Co1—O3i 91.11 (4) C9—C8—C7 117.92 (16)
N1—Co1—O3 93.69 (5) C9—C8—C3 122.62 (15)
N1i—Co1—O3 86.31 (5) C7—C8—C3 119.46 (15)
O1—Co1—O3 91.11 (4) C10—C9—C8 120.91 (18)
O1i—Co1—O3 88.89 (4) C10—C9—H9 119.5
O3i—Co1—O3 180.00 (6) C8—C9—H9 119.5
C15—N1—C13 105.06 (14) C9—C10—C11 120.9 (2)
C15—N1—Co1 128.77 (11) C9—C10—H10 119.6
C13—N1—Co1 126.13 (11) C11—C10—H10 119.6
C15—N2—C14 106.99 (14) C12—C11—C10 120.1 (2)
C15—N2—C16 126.28 (16) C12—C11—H11 119.9
C14—N2—C16 126.72 (15) C10—C11—H11 119.9
C1—O1—Co1 127.40 (10) C11—C12—C7 121.06 (19)
Co1—O3—H3A 127.2 (18) C11—C12—H12 119.5
Co1—O3—H3B 94.9 (19) C7—C12—H12 119.5
H3A—O3—H3B 105 (3) C14—C13—N1 109.88 (16)
O2—C1—O1 126.26 (14) C14—C13—H13 125.1
O2—C1—C2 117.33 (13) N1—C13—H13 125.1
O1—C1—C2 116.37 (14) C13—C14—N2 106.28 (15)
C3—C2—C1 115.10 (13) C13—C14—H14 126.9
C3—C2—H2A 108.5 N2—C14—H14 126.9
C1—C2—H2A 108.5 N1—C15—N2 111.79 (15)
C3—C2—H2B 108.5 N1—C15—H15 124.1
C1—C2—H2B 108.5 N2—C15—H15 124.1
H2A—C2—H2B 107.5 N2—C16—H16A 109.5
C4—C3—C8 118.82 (16) N2—C16—H16B 109.5
C4—C3—C2 120.25 (16) H16A—C16—H16B 109.5
C8—C3—C2 120.92 (14) N2—C16—H16C 109.5
C3—C4—C5 121.53 (19) H16A—C16—H16C 109.5
C3—C4—H4 119.2 H16B—C16—H16C 109.5
C5—C4—H4 119.2
O1—Co1—N1—C15 −139.37 (14) C6—C7—C8—C9 178.98 (16)
O1i—Co1—N1—C15 40.63 (14) C12—C7—C8—C9 −0.8 (2)
O3i—Co1—N1—C15 131.77 (15) C6—C7—C8—C3 −0.2 (2)
O3—Co1—N1—C15 −48.23 (15) C12—C7—C8—C3 179.99 (15)
O1—Co1—N1—C13 43.28 (14) C4—C3—C8—C9 179.47 (16)
O1i—Co1—N1—C13 −136.72 (14) C2—C3—C8—C9 −1.4 (2)
O3i—Co1—N1—C13 −45.58 (14) C4—C3—C8—C7 −1.3 (2)
O3—Co1—N1—C13 134.42 (14) C2—C3—C8—C7 177.79 (14)
N1—Co1—O1—C1 107.01 (13) C7—C8—C9—C10 −0.2 (3)
N1i—Co1—O1—C1 −72.99 (13) C3—C8—C9—C10 178.98 (17)
O3i—Co1—O1—C1 −166.69 (12) C8—C9—C10—C11 0.8 (3)
O3—Co1—O1—C1 13.31 (12) C9—C10—C11—C12 −0.4 (3)
Co1—O1—C1—O2 2.2 (2) C10—C11—C12—C7 −0.7 (3)
Co1—O1—C1—C2 −175.43 (10) C6—C7—C12—C11 −178.52 (19)
O2—C1—C2—C3 22.5 (2) C8—C7—C12—C11 1.2 (3)
O1—C1—C2—C3 −159.65 (14) C15—N1—C13—C14 −0.2 (2)
C1—C2—C3—C4 −106.75 (18) Co1—N1—C13—C14 177.66 (12)
C1—C2—C3—C8 74.13 (19) N1—C13—C14—N2 0.2 (2)
C8—C3—C4—C5 1.8 (3) C15—N2—C14—C13 −0.06 (19)
C2—C3—C4—C5 −177.34 (16) C16—N2—C14—C13 −179.08 (17)
C3—C4—C5—C6 −0.6 (3) C13—N1—C15—N2 0.16 (19)
C4—C5—C6—C7 −1.1 (3) Co1—N1—C15—N2 −177.62 (10)
C5—C6—C7—C12 −178.80 (19) C14—N2—C15—N1 −0.07 (19)
C5—C6—C7—C8 1.5 (3) C16—N2—C15—N1 178.96 (16)

Symmetry code: (i) −x+1, −y+1, −z.

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
O3—H3A···O2ii 0.84 (2) 2.13 (2) 2.8523 (18) 144 (2)
O3—H3B···O2 0.85 (2) 1.81 (2) 2.6463 (16) 168 (2)

Symmetry code: (ii) −x, −y+1, −z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HY2522).

References

  1. Brandenburg, K. (1999). DIAMOND. Crystal Impact GbR, Bonn, Germany.
  2. Bruker (2007). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Duan, J.-G., Liu, J.-W. & Wu, S. (2007). Acta Cryst. E63, m692–m694.
  4. Ji, L.-L., Liu, J.-S. & Song, W.-D. (2011). Acta Cryst. E67, m606. [DOI] [PMC free article] [PubMed]
  5. Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
  6. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  7. Tang, D.-X., Feng, L.-X. & Zhang, X.-Q. (2006). Chin. J. Inorg. Chem. 22, 1891–1894.
  8. Yang, Y.-Q., Li, C.-H., Li, W. & Kuang, Y.-F. (2008). Chin. J. Struct. Chem. 30, 4524–4530.
  9. Yin, F.-J., Han, L.-J., Yang, S.-P. & Xu, X. Y. (2011). Acta Cryst. E67, m1772. [DOI] [PMC free article] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812013505/hy2522sup1.cif

e-68-0m533-sup1.cif (19.5KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812013505/hy2522Isup2.hkl

e-68-0m533-Isup2.hkl (161.3KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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