Abstract
In the title coordination polymer, [Cd(C8H5N2O2S)2(C10H8N2)]n, the CdII ion is coordinated by a bidentate 2,2-bipyridyl ligand, two O,O′-chelating 2-amino-1,3-benzothiazole-6-carboxylate (ABTC) ligands and one N-bonded ABTC ligand. The resulting CdN3O4 coordination polyhedron approximates to a very distorted pentagonal bipramid with one O and one N atom in axial positions. One of the ABTC ligands is bridging to an adjacent metal atom, generating an infinite chain propagating in [100]. A three-dimensional network is constructed from N—H⋯O and N—H⋯N hydrogen bonds and aromatic π–π stacking interactions [centroid–centroid separations = 3.641 (2) and 3.682 (3) Å].
Related literature
For our recent work on the design and sythesis of benzothiazole coordination networks, see: Fang et al. (2010 ▶); Lei et al. (2010 ▶). For the synthesis of the ligand, see: Das et al. (2003 ▶).
Experimental
Crystal data
[Cd(C8H5N2O2S)2(C10H8N2)]
M r = 640.87
Triclinic,
a = 9.977 (2) Å
b = 11.715 (2) Å
c = 11.734 (2) Å
α = 65.28 (3)°
β = 77.52 (3)°
γ = 77.15 (3)°
V = 1202.8 (4) Å3
Z = 2
Mo Kα radiation
μ = 1.13 mm−1
T = 173 K
0.27 × 0.18 × 0.13 mm
Data collection
Rigaku Saturn 724 CCD area-detector diffractometer
Absorption correction: numerical (NUMABS; Higashi, 2000 ▶) T min = 0.837, T max = 1.000
10158 measured reflections
5296 independent reflections
5015 reflections with I > 2σ(I)
R int = 0.037
Refinement
R[F 2 > 2σ(F 2)] = 0.040
wR(F 2) = 0.088
S = 1.08
5296 reflections
352 parameters
H-atom parameters constrained
Δρmax = 1.50 e Å−3
Δρmin = −0.72 e Å−3
Data collection: CrystalClear (Rigaku, 2007 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEX (McArdle, 1995 ▶); software used to prepare material for publication: SHELXL97.
Supplementary Material
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681201642X/hb6715sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681201642X/hb6715Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Selected bond lengths (Å).
| Cd1—N3 | 2.345 (3) |
| Cd1—O3i | 2.372 (2) |
| Cd1—O1 | 2.381 (3) |
| Cd1—N1 | 2.391 (3) |
| Cd1—O2 | 2.415 (3) |
| Cd1—O4i | 2.422 (2) |
| Cd1—N2 | 2.484 (3) |
Symmetry code: (i)
.
Table 2. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N6—H6A⋯O3ii | 0.88 | 2.10 | 2.917 (4) | 155 |
| N6—H6B⋯O3iii | 0.88 | 2.12 | 2.996 (4) | 173 |
| N4—H4A⋯O4i | 0.88 | 2.25 | 3.101 (4) | 162 |
| N4—H4B⋯N5iv | 0.88 | 2.21 | 3.066 (4) | 163 |
Symmetry codes: (i)
; (ii)
; (iii)
; (iv)
.
Acknowledgments
The authors gratefully acknowledge financial support from the Foundations of Fuzhou University (2010-XQ-06) and the Education Department of Fujian Province (JA11020).
supplementary crystallographic information
Comment
As part of our ongoing studies of benzothiaole-based coordination networks (Fang et al., 2010; Lei et al., 2010), we now report the structure of a coordination polymer of cadmium and 2-amino-1,3-benzothiazole-6-carboxylate (ABTC) with 2,2'-bipyridine (bpy) as second ligand.
The polymer is a triclinic system crystal and it crystallizes in the space group of P-1. In the asymmetric unit (Fig. 1), center Cd (II) is seven-coordinated with (κ1, κ2)-µ2 coordination model, where one bpy provides two N atoms, one ABTC affords two O atoms, and the another ABTC affords two O atoms and one N atom of thiazole. The four Cd—O bonds are Cd1—O1, Cd1—O2, Cd1—O3, and Cd1—O4, with distance of 2.380 (7) Å, 2.415 (7) Å, 2.371 (3) Å, and 2.422 (6) Å, respectively. The three Cd—N bonds are Cd1—N1, Cd1—N2, and Cd1—N3, with distance of 2.390 (8) Å, 2.484 (1) Å, and 2.345 (6) Å, respectively, where the Cd1—N2 distance is slightly longer than common distance of Cd and N.
The asymmetric units are forming chains extending along the a axis (Fig. 2), through the one ABTC coordinated to two Cd(II) simultaneously by O from carboxylate and N from thiazole ring, respectively. Furthermore, three-dimensional supermolecular net (Fig. 3) are constructed by hydrogen bonds, as listed in Table 1, and π-π interactions [between thiazole and benzene rings (with certroid-centroid distance of 3.682 (3) Å and centroid-ring plane distance of 3.350 (9) and 3.404 (3) Å), and between the thiazole and bpy rings (with certroid-centroid distance of 3.641 (2) Å and centroid-ring plane distance of 3.478 (9) and 3.331 (7) Å)].
Experimental
The 2-aminobenzothiazole-6-carboxylic acid ligand was obtained by hydrolyzing of ethyl-2-amion-1,3-benzothiazole-6-carboxylate (Das et al. 2003). The mixture of cadmium carbonate (0.0172 g, 0.1 mol), 2-aminobenzothiazole-6-carboxylic acid (0.0388 g, 0.2 mol), 2,2'-bipyridine (0.0160 g, 0.1 mol) and H2O (8 ml) was sealed in a 23 ml stainless-steel reactor with Teflon liner and heated (283 K per hour) from room temperature to 423 K and kept at 423 K for 4 days, then cooled (279 K per hour) to room temperature. Colorless prisms were obtained.
Refinement
All hydrogen atoms were positioned geometrically and refined in a riding model approximation with Uiso (H) = 1.2 Ueq (C) or Ueq (N).
Figures
Fig. 1.
The coordination environment of Cd atom, drawn with 50% probability displacement ellipsoids. [Symmetry codes: (i)1 + x,y,z; (ii)-1 + x,y,z]
Fig. 2.
A Chain formed by Cd1—N3 bond. H atoms are omitted.
Fig. 3.
Three-dimensional net with hydrogen bonds and π-π interactions. H atoms are omitted except those forming hydrogen bonds.
Crystal data
| [Cd(C8H5N2O2S)2(C10H8N2)] | Z = 2 |
| Mr = 640.87 | F(000) = 656.0 |
| Triclinic, P1 | Dx = 1.770 Mg m−3 |
| Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
| a = 9.977 (2) Å | Cell parameters from 4682 reflections |
| b = 11.715 (2) Å | θ = 3.1–27.6° |
| c = 11.734 (2) Å | µ = 1.13 mm−1 |
| α = 65.28 (3)° | T = 173 K |
| β = 77.52 (3)° | Prism, colourless |
| γ = 77.15 (3)° | 0.27 × 0.18 × 0.13 mm |
| V = 1202.8 (4) Å3 |
Data collection
| Rigaku Saturn 724 CCD area-detector diffractometer | 5296 independent reflections |
| Radiation source: fine-focus sealed tube | 5015 reflections with I > 2σ(I) |
| Graphite monochromator | Rint = 0.037 |
| Detector resolution: 28.5714 pixels mm-1 | θmax = 27.6°, θmin = 3.6° |
| dtprofit.ref scans | h = −12→12 |
| Absorption correction: numerical (NUMABS; Higashi, 2000) | k = −14→15 |
| Tmin = 0.837, Tmax = 1.000 | l = −14→15 |
| 10158 measured reflections |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.040 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.088 | H-atom parameters constrained |
| S = 1.08 | w = 1/[σ2(Fo2) + (0.0263P)2 + 2.5814P] where P = (Fo2 + 2Fc2)/3 |
| 5296 reflections | (Δ/σ)max = 0.001 |
| 352 parameters | Δρmax = 1.50 e Å−3 |
| 0 restraints | Δρmin = −0.72 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Cd1 | 0.30365 (2) | 0.70429 (2) | 0.09531 (2) | 0.01412 (8) | |
| S2 | 0.41833 (9) | 0.83130 (8) | −0.62591 (8) | 0.01725 (17) | |
| O1 | 0.3596 (3) | 0.7157 (2) | −0.1166 (2) | 0.0248 (6) | |
| O2 | 0.2554 (3) | 0.8927 (3) | −0.0912 (2) | 0.0271 (6) | |
| N1 | 0.1528 (3) | 0.8327 (3) | 0.1983 (3) | 0.0155 (6) | |
| N2 | 0.2833 (3) | 0.5972 (3) | 0.3298 (3) | 0.0180 (6) | |
| N5 | 0.3521 (3) | 1.0786 (3) | −0.6983 (3) | 0.0158 (6) | |
| N6 | 0.4267 (3) | 1.0043 (3) | −0.8634 (3) | 0.0213 (6) | |
| H6A | 0.4161 | 1.0813 | −0.9227 | 0.026* | |
| H6B | 0.4567 | 0.9382 | −0.8844 | 0.026* | |
| S1 | 0.06488 (8) | 0.34375 (7) | 0.19139 (8) | 0.01547 (16) | |
| N3 | 0.1635 (3) | 0.5537 (3) | 0.1288 (3) | 0.0140 (5) | |
| N4 | 0.3306 (3) | 0.3686 (3) | 0.1717 (3) | 0.0178 (6) | |
| H4A | 0.3994 | 0.4110 | 0.1563 | 0.021* | |
| H4B | 0.3471 | 0.2856 | 0.1940 | 0.021* | |
| O4 | −0.4784 (2) | 0.5623 (2) | 0.1301 (2) | 0.0175 (5) | |
| O3 | −0.4823 (2) | 0.7664 (2) | 0.0858 (2) | 0.0172 (5) | |
| C1 | 0.1130 (3) | 0.9574 (3) | 0.1355 (3) | 0.0179 (7) | |
| H1 | 0.1300 | 0.9911 | 0.0456 | 0.021* | |
| C2 | 0.0484 (4) | 1.0395 (3) | 0.1951 (3) | 0.0196 (7) | |
| H2 | 0.0224 | 1.1273 | 0.1470 | 0.023* | |
| C3 | 0.0224 (4) | 0.9910 (3) | 0.3263 (3) | 0.0201 (7) | |
| H3 | −0.0199 | 1.0452 | 0.3699 | 0.024* | |
| C4 | 0.0592 (3) | 0.8621 (3) | 0.3925 (3) | 0.0195 (7) | |
| H4 | 0.0400 | 0.8262 | 0.4824 | 0.023* | |
| C5 | 0.1251 (3) | 0.7848 (3) | 0.3261 (3) | 0.0160 (6) | |
| C6 | 0.1758 (4) | 0.6489 (3) | 0.3931 (3) | 0.0171 (7) | |
| C7 | 0.1184 (4) | 0.5801 (4) | 0.5154 (3) | 0.0245 (8) | |
| H7 | 0.0404 | 0.6179 | 0.5569 | 0.029* | |
| C8 | 0.1773 (4) | 0.4542 (4) | 0.5763 (3) | 0.0267 (8) | |
| H8 | 0.1392 | 0.4042 | 0.6596 | 0.032* | |
| C9 | 0.2915 (4) | 0.4038 (3) | 0.5134 (3) | 0.0249 (8) | |
| H9 | 0.3361 | 0.3195 | 0.5541 | 0.030* | |
| C10 | 0.3402 (4) | 0.4771 (3) | 0.3908 (4) | 0.0236 (7) | |
| H10 | 0.4178 | 0.4408 | 0.3475 | 0.028* | |
| C11 | 0.0212 (3) | 0.5869 (3) | 0.1247 (3) | 0.0144 (6) | |
| C12 | −0.0528 (3) | 0.7099 (3) | 0.0958 (3) | 0.0155 (6) | |
| H12 | −0.0063 | 0.7795 | 0.0771 | 0.019* | |
| C13 | −0.1952 (3) | 0.7287 (3) | 0.0949 (3) | 0.0163 (6) | |
| H13 | −0.2461 | 0.8115 | 0.0777 | 0.020* | |
| C14 | −0.2650 (3) | 0.6284 (3) | 0.1187 (3) | 0.0150 (6) | |
| C15 | −0.1930 (3) | 0.5050 (3) | 0.1483 (3) | 0.0147 (6) | |
| H15 | −0.2395 | 0.4360 | 0.1651 | 0.018* | |
| C16 | −0.0512 (3) | 0.4864 (3) | 0.1522 (3) | 0.0135 (6) | |
| C17 | 0.2006 (3) | 0.4302 (3) | 0.1613 (3) | 0.0139 (6) | |
| C18 | 0.3359 (3) | 1.0268 (3) | −0.5664 (3) | 0.0163 (6) | |
| C19 | 0.2953 (4) | 1.0964 (3) | −0.4897 (3) | 0.0193 (7) | |
| H19 | 0.2735 | 1.1864 | −0.5264 | 0.023* | |
| C20 | 0.2872 (3) | 1.0324 (3) | −0.3587 (3) | 0.0191 (7) | |
| H20 | 0.2600 | 1.0796 | −0.3064 | 0.023* | |
| C21 | 0.3182 (3) | 0.9002 (3) | −0.3027 (3) | 0.0176 (7) | |
| C22 | 0.3572 (3) | 0.8301 (3) | −0.3795 (3) | 0.0183 (7) | |
| H22 | 0.3774 | 0.7400 | −0.3426 | 0.022* | |
| C23 | 0.3659 (3) | 0.8933 (3) | −0.5094 (3) | 0.0161 (6) | |
| C24 | 0.3974 (3) | 0.9876 (3) | −0.7413 (3) | 0.0172 (7) | |
| C25 | 0.3105 (3) | 0.8324 (3) | −0.1607 (3) | 0.0187 (7) | |
| C26 | −0.4178 (3) | 0.6531 (3) | 0.1118 (3) | 0.0136 (6) |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Cd1 | 0.01171 (12) | 0.01595 (13) | 0.01451 (12) | −0.00318 (9) | −0.00112 (8) | −0.00551 (9) |
| S2 | 0.0197 (4) | 0.0161 (4) | 0.0165 (4) | −0.0033 (3) | −0.0023 (3) | −0.0066 (3) |
| O1 | 0.0318 (15) | 0.0235 (13) | 0.0170 (12) | −0.0069 (11) | −0.0032 (11) | −0.0045 (10) |
| O2 | 0.0271 (14) | 0.0345 (15) | 0.0163 (12) | 0.0047 (12) | −0.0040 (11) | −0.0107 (11) |
| N1 | 0.0119 (13) | 0.0193 (14) | 0.0155 (13) | −0.0037 (11) | −0.0031 (11) | −0.0057 (11) |
| N2 | 0.0215 (15) | 0.0161 (14) | 0.0160 (13) | −0.0020 (11) | −0.0040 (11) | −0.0057 (11) |
| N5 | 0.0151 (14) | 0.0150 (13) | 0.0162 (13) | −0.0039 (11) | −0.0023 (11) | −0.0042 (11) |
| N6 | 0.0279 (16) | 0.0182 (14) | 0.0164 (14) | −0.0030 (12) | 0.0008 (12) | −0.0075 (12) |
| S1 | 0.0135 (4) | 0.0134 (4) | 0.0192 (4) | −0.0021 (3) | −0.0022 (3) | −0.0061 (3) |
| N3 | 0.0088 (13) | 0.0160 (13) | 0.0164 (13) | −0.0019 (10) | −0.0019 (10) | −0.0055 (11) |
| N4 | 0.0134 (13) | 0.0166 (14) | 0.0221 (14) | −0.0005 (11) | −0.0021 (11) | −0.0074 (11) |
| O4 | 0.0112 (11) | 0.0196 (12) | 0.0232 (12) | −0.0049 (9) | −0.0019 (9) | −0.0086 (10) |
| O3 | 0.0142 (11) | 0.0171 (11) | 0.0198 (12) | −0.0035 (9) | −0.0024 (9) | −0.0061 (9) |
| C1 | 0.0201 (17) | 0.0195 (16) | 0.0151 (15) | −0.0069 (14) | −0.0032 (13) | −0.0053 (13) |
| C2 | 0.0195 (17) | 0.0151 (16) | 0.0229 (17) | −0.0007 (13) | −0.0034 (14) | −0.0069 (13) |
| C3 | 0.0178 (17) | 0.0219 (17) | 0.0222 (17) | −0.0016 (14) | −0.0015 (14) | −0.0113 (14) |
| C4 | 0.0172 (17) | 0.0248 (18) | 0.0160 (16) | −0.0001 (14) | −0.0013 (13) | −0.0094 (14) |
| C5 | 0.0128 (15) | 0.0195 (16) | 0.0155 (15) | −0.0036 (13) | −0.0018 (12) | −0.0061 (13) |
| C6 | 0.0182 (17) | 0.0178 (16) | 0.0170 (16) | −0.0017 (13) | −0.0053 (13) | −0.0076 (13) |
| C7 | 0.028 (2) | 0.0244 (18) | 0.0159 (16) | 0.0004 (15) | −0.0001 (15) | −0.0068 (14) |
| C8 | 0.038 (2) | 0.0246 (19) | 0.0149 (16) | −0.0051 (16) | −0.0040 (15) | −0.0046 (14) |
| C9 | 0.033 (2) | 0.0175 (17) | 0.0215 (18) | 0.0008 (15) | −0.0111 (16) | −0.0038 (14) |
| C10 | 0.0255 (19) | 0.0206 (17) | 0.0261 (18) | 0.0006 (15) | −0.0077 (15) | −0.0105 (15) |
| C11 | 0.0148 (16) | 0.0154 (15) | 0.0126 (14) | −0.0040 (12) | −0.0028 (12) | −0.0038 (12) |
| C12 | 0.0189 (17) | 0.0134 (15) | 0.0138 (15) | −0.0058 (13) | −0.0024 (12) | −0.0034 (12) |
| C13 | 0.0179 (17) | 0.0167 (16) | 0.0132 (15) | −0.0043 (13) | −0.0015 (12) | −0.0042 (12) |
| C14 | 0.0142 (16) | 0.0186 (16) | 0.0120 (14) | −0.0039 (13) | −0.0017 (12) | −0.0054 (12) |
| C15 | 0.0176 (16) | 0.0155 (15) | 0.0129 (14) | −0.0064 (13) | 0.0005 (12) | −0.0066 (12) |
| C16 | 0.0139 (15) | 0.0133 (15) | 0.0117 (14) | −0.0019 (12) | −0.0014 (12) | −0.0034 (12) |
| C17 | 0.0119 (15) | 0.0186 (16) | 0.0116 (14) | −0.0017 (12) | −0.0017 (12) | −0.0065 (12) |
| C18 | 0.0146 (16) | 0.0208 (17) | 0.0151 (15) | −0.0058 (13) | −0.0010 (12) | −0.0075 (13) |
| C19 | 0.0180 (17) | 0.0204 (17) | 0.0215 (17) | −0.0031 (14) | −0.0025 (14) | −0.0101 (14) |
| C20 | 0.0171 (17) | 0.0240 (18) | 0.0190 (16) | −0.0027 (14) | −0.0013 (13) | −0.0118 (14) |
| C21 | 0.0128 (16) | 0.0245 (17) | 0.0153 (16) | −0.0021 (13) | −0.0012 (13) | −0.0083 (13) |
| C22 | 0.0168 (17) | 0.0170 (16) | 0.0164 (16) | −0.0034 (13) | −0.0006 (13) | −0.0024 (13) |
| C23 | 0.0160 (16) | 0.0172 (16) | 0.0159 (15) | −0.0028 (13) | −0.0026 (13) | −0.0066 (13) |
| C24 | 0.0157 (16) | 0.0204 (17) | 0.0177 (16) | −0.0067 (13) | −0.0042 (13) | −0.0066 (13) |
| C25 | 0.0097 (15) | 0.0285 (19) | 0.0176 (16) | −0.0045 (14) | −0.0020 (13) | −0.0077 (14) |
| C26 | 0.0128 (15) | 0.0168 (15) | 0.0104 (14) | −0.0022 (12) | −0.0010 (12) | −0.0046 (12) |
Geometric parameters (Å, º)
| Cd1—N3 | 2.345 (3) | C3—C4 | 1.384 (5) |
| Cd1—O3i | 2.372 (2) | C3—H3 | 0.9500 |
| Cd1—O1 | 2.381 (3) | C4—C5 | 1.401 (5) |
| Cd1—N1 | 2.391 (3) | C4—H4 | 0.9500 |
| Cd1—O2 | 2.415 (3) | C5—C6 | 1.474 (5) |
| Cd1—O4i | 2.422 (2) | C6—C7 | 1.386 (5) |
| Cd1—N2 | 2.484 (3) | C7—C8 | 1.395 (5) |
| S2—C23 | 1.739 (3) | C7—H7 | 0.9500 |
| S2—C24 | 1.763 (4) | C8—C9 | 1.376 (5) |
| O1—C25 | 1.264 (4) | C8—H8 | 0.9500 |
| O2—C25 | 1.258 (4) | C9—C10 | 1.376 (5) |
| N1—C1 | 1.342 (4) | C9—H9 | 0.9500 |
| N1—C5 | 1.352 (4) | C10—H10 | 0.9500 |
| N2—C10 | 1.339 (4) | C11—C12 | 1.402 (5) |
| N2—C6 | 1.346 (4) | C11—C16 | 1.404 (4) |
| N5—C24 | 1.316 (4) | C12—C13 | 1.390 (5) |
| N5—C18 | 1.392 (4) | C12—H12 | 0.9500 |
| N6—C24 | 1.337 (4) | C13—C14 | 1.396 (4) |
| N6—H6A | 0.8800 | C13—H13 | 0.9500 |
| N6—H6B | 0.8800 | C14—C15 | 1.397 (5) |
| S1—C16 | 1.753 (3) | C14—C26 | 1.500 (4) |
| S1—C17 | 1.758 (3) | C15—C16 | 1.390 (4) |
| N3—C17 | 1.318 (4) | C15—H15 | 0.9500 |
| N3—C11 | 1.392 (4) | C18—C19 | 1.396 (5) |
| N4—C17 | 1.340 (4) | C18—C23 | 1.410 (5) |
| N4—H4A | 0.8800 | C19—C20 | 1.393 (5) |
| N4—H4B | 0.8800 | C19—H19 | 0.9500 |
| O4—C26 | 1.258 (4) | C20—C21 | 1.396 (5) |
| O4—Cd1ii | 2.422 (2) | C20—H20 | 0.9500 |
| O3—C26 | 1.279 (4) | C21—C22 | 1.401 (5) |
| O3—Cd1ii | 2.372 (2) | C21—C25 | 1.509 (5) |
| C1—C2 | 1.387 (5) | C22—C23 | 1.380 (5) |
| C1—H1 | 0.9500 | C22—H22 | 0.9500 |
| C2—C3 | 1.386 (5) | C26—Cd1ii | 2.742 (3) |
| C2—H2 | 0.9500 | ||
| N3—Cd1—O3i | 153.13 (9) | N1—C5—C6 | 116.9 (3) |
| N3—Cd1—O1 | 85.88 (10) | C4—C5—C6 | 121.3 (3) |
| O3i—Cd1—O1 | 92.07 (9) | N2—C6—C7 | 122.2 (3) |
| N3—Cd1—N1 | 101.19 (9) | N2—C6—C5 | 116.1 (3) |
| O3i—Cd1—N1 | 99.05 (9) | C7—C6—C5 | 121.7 (3) |
| O1—Cd1—N1 | 135.28 (9) | C6—C7—C8 | 118.7 (3) |
| N3—Cd1—O2 | 110.44 (10) | C6—C7—H7 | 120.6 |
| O3i—Cd1—O2 | 89.76 (9) | C8—C7—H7 | 120.6 |
| O1—Cd1—O2 | 54.93 (9) | C9—C8—C7 | 118.7 (3) |
| N1—Cd1—O2 | 81.78 (9) | C9—C8—H8 | 120.6 |
| N3—Cd1—O4i | 98.05 (9) | C7—C8—H8 | 120.6 |
| O3i—Cd1—O4i | 55.09 (8) | C8—C9—C10 | 119.1 (3) |
| O1—Cd1—O4i | 85.33 (9) | C8—C9—H9 | 120.4 |
| N1—Cd1—O4i | 135.73 (9) | C10—C9—H9 | 120.4 |
| O2—Cd1—O4i | 127.19 (9) | N2—C10—C9 | 123.0 (3) |
| N3—Cd1—N2 | 80.49 (10) | N2—C10—H10 | 118.5 |
| O3i—Cd1—N2 | 91.08 (9) | C9—C10—H10 | 118.5 |
| O1—Cd1—N2 | 155.59 (9) | N3—C11—C12 | 125.5 (3) |
| N1—Cd1—N2 | 67.79 (10) | N3—C11—C16 | 115.7 (3) |
| O2—Cd1—N2 | 149.31 (9) | C12—C11—C16 | 118.8 (3) |
| O4i—Cd1—N2 | 76.72 (9) | C13—C12—C11 | 119.0 (3) |
| N3—Cd1—C25 | 99.34 (10) | C13—C12—H12 | 120.5 |
| O3i—Cd1—C25 | 90.67 (9) | C11—C12—H12 | 120.5 |
| O1—Cd1—C25 | 27.53 (9) | C12—C13—C14 | 121.5 (3) |
| N1—Cd1—C25 | 108.67 (10) | C12—C13—H13 | 119.3 |
| O2—Cd1—C25 | 27.41 (10) | C14—C13—H13 | 119.3 |
| O4i—Cd1—C25 | 106.96 (10) | C13—C14—C15 | 120.2 (3) |
| N2—Cd1—C25 | 176.27 (10) | C13—C14—C26 | 120.0 (3) |
| N3—Cd1—C26i | 125.36 (10) | C15—C14—C26 | 119.8 (3) |
| O3i—Cd1—C26i | 27.78 (9) | C16—C15—C14 | 118.0 (3) |
| O1—Cd1—C26i | 88.58 (10) | C16—C15—H15 | 121.0 |
| N1—Cd1—C26i | 119.61 (9) | C14—C15—H15 | 121.0 |
| O2—Cd1—C26i | 110.00 (10) | C15—C16—C11 | 122.4 (3) |
| O4i—Cd1—C26i | 27.31 (8) | C15—C16—S1 | 128.6 (2) |
| N2—Cd1—C26i | 83.04 (10) | C11—C16—S1 | 109.0 (2) |
| C25—Cd1—C26i | 99.99 (10) | N3—C17—N4 | 125.4 (3) |
| C23—S2—C24 | 88.73 (16) | N3—C17—S1 | 115.4 (2) |
| C25—O1—Cd1 | 92.0 (2) | N4—C17—S1 | 119.2 (2) |
| C25—O2—Cd1 | 90.5 (2) | N5—C18—C19 | 125.3 (3) |
| C1—N1—C5 | 118.0 (3) | N5—C18—C23 | 115.5 (3) |
| C1—N1—Cd1 | 121.9 (2) | C19—C18—C23 | 119.2 (3) |
| C5—N1—Cd1 | 119.2 (2) | C20—C19—C18 | 119.2 (3) |
| C10—N2—C6 | 118.1 (3) | C20—C19—H19 | 120.4 |
| C10—N2—Cd1 | 123.5 (2) | C18—C19—H19 | 120.4 |
| C6—N2—Cd1 | 114.9 (2) | C19—C20—C21 | 121.4 (3) |
| C24—N5—C18 | 109.9 (3) | C19—C20—H20 | 119.3 |
| C24—N6—H6A | 120.0 | C21—C20—H20 | 119.3 |
| C24—N6—H6B | 120.0 | C20—C21—C22 | 119.5 (3) |
| H6A—N6—H6B | 120.0 | C20—C21—C25 | 120.7 (3) |
| C16—S1—C17 | 89.23 (15) | C22—C21—C25 | 119.8 (3) |
| C17—N3—C11 | 110.7 (3) | C23—C22—C21 | 119.3 (3) |
| C17—N3—Cd1 | 127.6 (2) | C23—C22—H22 | 120.4 |
| C11—N3—Cd1 | 121.6 (2) | C21—C22—H22 | 120.4 |
| C17—N4—H4A | 120.0 | C22—C23—C18 | 121.4 (3) |
| C17—N4—H4B | 120.0 | C22—C23—S2 | 128.8 (3) |
| H4A—N4—H4B | 120.0 | C18—C23—S2 | 109.7 (2) |
| C26—O4—Cd1ii | 90.62 (19) | N5—C24—N6 | 125.6 (3) |
| C26—O3—Cd1ii | 92.41 (19) | N5—C24—S2 | 116.1 (3) |
| N1—C1—C2 | 123.4 (3) | N6—C24—S2 | 118.3 (3) |
| N1—C1—H1 | 118.3 | O2—C25—O1 | 122.6 (3) |
| C2—C1—H1 | 118.3 | O2—C25—C21 | 119.5 (3) |
| C3—C2—C1 | 118.6 (3) | O1—C25—C21 | 117.9 (3) |
| C3—C2—H2 | 120.7 | O2—C25—Cd1 | 62.11 (18) |
| C1—C2—H2 | 120.7 | O1—C25—Cd1 | 60.52 (18) |
| C4—C3—C2 | 118.8 (3) | C21—C25—Cd1 | 178.2 (2) |
| C4—C3—H3 | 120.6 | O4—C26—O3 | 121.9 (3) |
| C2—C3—H3 | 120.6 | O4—C26—C14 | 119.2 (3) |
| C3—C4—C5 | 119.5 (3) | O3—C26—C14 | 118.9 (3) |
| C3—C4—H4 | 120.3 | O4—C26—Cd1ii | 62.07 (17) |
| C5—C4—H4 | 120.3 | O3—C26—Cd1ii | 59.82 (16) |
| N1—C5—C4 | 121.7 (3) | C14—C26—Cd1ii | 178.6 (2) |
| N3—Cd1—O1—C25 | 119.4 (2) | C17—N3—C11—C12 | 178.7 (3) |
| O3i—Cd1—O1—C25 | −87.5 (2) | Cd1—N3—C11—C12 | 2.8 (4) |
| N1—Cd1—O1—C25 | 17.6 (3) | C17—N3—C11—C16 | −1.3 (4) |
| O2—Cd1—O1—C25 | 0.78 (19) | Cd1—N3—C11—C16 | −177.1 (2) |
| O4i—Cd1—O1—C25 | −142.2 (2) | N3—C11—C12—C13 | 179.8 (3) |
| N2—Cd1—O1—C25 | 175.3 (2) | C16—C11—C12—C13 | −0.3 (5) |
| C26i—Cd1—O1—C25 | −115.0 (2) | C11—C12—C13—C14 | −1.7 (5) |
| N3—Cd1—O2—C25 | −70.0 (2) | C12—C13—C14—C15 | 2.1 (5) |
| O3i—Cd1—O2—C25 | 91.9 (2) | C12—C13—C14—C26 | −177.5 (3) |
| O1—Cd1—O2—C25 | −0.78 (19) | C13—C14—C15—C16 | −0.4 (5) |
| N1—Cd1—O2—C25 | −168.9 (2) | C26—C14—C15—C16 | 179.3 (3) |
| O4i—Cd1—O2—C25 | 48.1 (2) | C14—C15—C16—C11 | −1.7 (5) |
| N2—Cd1—O2—C25 | −176.38 (19) | C14—C15—C16—S1 | 177.6 (2) |
| C26i—Cd1—O2—C25 | 72.5 (2) | N3—C11—C16—C15 | −178.1 (3) |
| N3—Cd1—N1—C1 | −120.1 (2) | C12—C11—C16—C15 | 2.0 (5) |
| O3i—Cd1—N1—C1 | 77.7 (2) | N3—C11—C16—S1 | 2.6 (3) |
| O1—Cd1—N1—C1 | −24.6 (3) | C12—C11—C16—S1 | −177.4 (2) |
| O2—Cd1—N1—C1 | −10.7 (2) | C17—S1—C16—C15 | 178.3 (3) |
| O4i—Cd1—N1—C1 | 125.9 (2) | C17—S1—C16—C11 | −2.4 (2) |
| N2—Cd1—N1—C1 | 165.2 (3) | C11—N3—C17—N4 | 178.8 (3) |
| C25—Cd1—N1—C1 | −16.1 (3) | Cd1—N3—C17—N4 | −5.6 (5) |
| C26i—Cd1—N1—C1 | 97.6 (3) | C11—N3—C17—S1 | −0.7 (3) |
| N3—Cd1—N1—C5 | 71.2 (2) | Cd1—N3—C17—S1 | 174.85 (14) |
| O3i—Cd1—N1—C5 | −91.0 (2) | C16—S1—C17—N3 | 1.8 (3) |
| O1—Cd1—N1—C5 | 166.7 (2) | C16—S1—C17—N4 | −177.7 (3) |
| O2—Cd1—N1—C5 | −179.5 (2) | C24—N5—C18—C19 | 177.1 (3) |
| O4i—Cd1—N1—C5 | −42.9 (3) | C24—N5—C18—C23 | −1.9 (4) |
| N2—Cd1—N1—C5 | −3.6 (2) | N5—C18—C19—C20 | −178.1 (3) |
| C25—Cd1—N1—C5 | 175.2 (2) | C23—C18—C19—C20 | 0.9 (5) |
| C26i—Cd1—N1—C5 | −71.1 (3) | C18—C19—C20—C21 | −0.3 (5) |
| N3—Cd1—N2—C10 | 67.9 (3) | C19—C20—C21—C22 | −0.6 (5) |
| O3i—Cd1—N2—C10 | −86.4 (3) | C19—C20—C21—C25 | 179.3 (3) |
| O1—Cd1—N2—C10 | 11.0 (4) | C20—C21—C22—C23 | 0.8 (5) |
| N1—Cd1—N2—C10 | 174.2 (3) | C25—C21—C22—C23 | −179.0 (3) |
| O2—Cd1—N2—C10 | −177.8 (2) | C21—C22—C23—C18 | −0.2 (5) |
| O4i—Cd1—N2—C10 | −32.8 (3) | C21—C22—C23—S2 | 176.9 (3) |
| C25—Cd1—N2—C10 | 155.6 (14) | N5—C18—C23—C22 | 178.5 (3) |
| C26i—Cd1—N2—C10 | −59.8 (3) | C19—C18—C23—C22 | −0.6 (5) |
| N3—Cd1—N2—C6 | −90.6 (2) | N5—C18—C23—S2 | 0.8 (4) |
| O3i—Cd1—N2—C6 | 115.1 (2) | C19—C18—C23—S2 | −178.3 (3) |
| O1—Cd1—N2—C6 | −147.5 (2) | C24—S2—C23—C22 | −177.1 (3) |
| N1—Cd1—N2—C6 | 15.7 (2) | C24—S2—C23—C18 | 0.3 (3) |
| O2—Cd1—N2—C6 | 23.7 (3) | C18—N5—C24—N6 | −178.6 (3) |
| O4i—Cd1—N2—C6 | 168.7 (2) | C18—N5—C24—S2 | 2.2 (4) |
| C25—Cd1—N2—C6 | −2.9 (16) | C23—S2—C24—N5 | −1.5 (3) |
| C26i—Cd1—N2—C6 | 141.7 (2) | C23—S2—C24—N6 | 179.2 (3) |
| O3i—Cd1—N3—C17 | 0.5 (4) | Cd1—O2—C25—O1 | 1.4 (3) |
| O1—Cd1—N3—C17 | 86.9 (3) | Cd1—O2—C25—C21 | −179.1 (3) |
| N1—Cd1—N3—C17 | −137.7 (3) | Cd1—O1—C25—O2 | −1.5 (3) |
| O2—Cd1—N3—C17 | 137.0 (3) | Cd1—O1—C25—C21 | 179.1 (3) |
| O4i—Cd1—N3—C17 | 2.3 (3) | C20—C21—C25—O2 | 11.1 (5) |
| N2—Cd1—N3—C17 | −72.7 (3) | C22—C21—C25—O2 | −169.0 (3) |
| C25—Cd1—N3—C17 | 111.0 (3) | C20—C21—C25—O1 | −169.4 (3) |
| C26i—Cd1—N3—C17 | 1.6 (3) | C22—C21—C25—O1 | 10.4 (5) |
| O3i—Cd1—N3—C11 | 175.6 (2) | C20—C21—C25—Cd1 | −144 (8) |
| O1—Cd1—N3—C11 | −97.9 (2) | C22—C21—C25—Cd1 | 36 (8) |
| N1—Cd1—N3—C11 | 37.5 (2) | N3—Cd1—C25—O2 | 116.9 (2) |
| O2—Cd1—N3—C11 | −47.8 (2) | O3i—Cd1—C25—O2 | −88.2 (2) |
| O4i—Cd1—N3—C11 | 177.4 (2) | O1—Cd1—C25—O2 | 178.6 (3) |
| N2—Cd1—N3—C11 | 102.4 (2) | N1—Cd1—C25—O2 | 11.6 (2) |
| C25—Cd1—N3—C11 | −73.8 (2) | O4i—Cd1—C25—O2 | −141.69 (19) |
| C26i—Cd1—N3—C11 | 176.8 (2) | N2—Cd1—C25—O2 | 29.8 (16) |
| C5—N1—C1—C2 | 1.7 (5) | C26i—Cd1—C25—O2 | −114.5 (2) |
| Cd1—N1—C1—C2 | −167.2 (3) | N3—Cd1—C25—O1 | −61.8 (2) |
| N1—C1—C2—C3 | −0.4 (5) | O3i—Cd1—C25—O1 | 93.2 (2) |
| C1—C2—C3—C4 | −1.3 (5) | N1—Cd1—C25—O1 | −167.02 (19) |
| C2—C3—C4—C5 | 1.8 (5) | O2—Cd1—C25—O1 | −178.6 (3) |
| C1—N1—C5—C4 | −1.2 (5) | O4i—Cd1—C25—O1 | 39.7 (2) |
| Cd1—N1—C5—C4 | 168.0 (2) | N2—Cd1—C25—O1 | −148.9 (14) |
| C1—N1—C5—C6 | −177.1 (3) | C26i—Cd1—C25—O1 | 66.9 (2) |
| Cd1—N1—C5—C6 | −8.0 (4) | N3—Cd1—C25—C21 | −88 (8) |
| C3—C4—C5—N1 | −0.5 (5) | O3i—Cd1—C25—C21 | 67 (8) |
| C3—C4—C5—C6 | 175.2 (3) | O1—Cd1—C25—C21 | −26 (8) |
| C10—N2—C6—C7 | −3.6 (5) | N1—Cd1—C25—C21 | 167 (8) |
| Cd1—N2—C6—C7 | 156.1 (3) | O2—Cd1—C25—C21 | 155 (8) |
| C10—N2—C6—C5 | 174.5 (3) | O4i—Cd1—C25—C21 | 14 (8) |
| Cd1—N2—C6—C5 | −25.7 (4) | N2—Cd1—C25—C21 | −175 (7) |
| N1—C5—C6—N2 | 23.0 (4) | C26i—Cd1—C25—C21 | 41 (8) |
| C4—C5—C6—N2 | −153.0 (3) | Cd1ii—O4—C26—O3 | −0.3 (3) |
| N1—C5—C6—C7 | −158.8 (3) | Cd1ii—O4—C26—C14 | −179.3 (2) |
| C4—C5—C6—C7 | 25.2 (5) | Cd1ii—O3—C26—O4 | 0.3 (3) |
| N2—C6—C7—C8 | 2.2 (6) | Cd1ii—O3—C26—C14 | 179.3 (2) |
| C5—C6—C7—C8 | −175.8 (3) | C13—C14—C26—O4 | 178.0 (3) |
| C6—C7—C8—C9 | 1.1 (6) | C15—C14—C26—O4 | −1.6 (4) |
| C7—C8—C9—C10 | −2.8 (6) | C13—C14—C26—O3 | −1.0 (4) |
| C6—N2—C10—C9 | 1.7 (5) | C15—C14—C26—O3 | 179.4 (3) |
| Cd1—N2—C10—C9 | −156.1 (3) | C13—C14—C26—Cd1ii | 25 (9) |
| C8—C9—C10—N2 | 1.5 (6) | C15—C14—C26—Cd1ii | −155 (9) |
Symmetry codes: (i) x+1, y, z; (ii) x−1, y, z.
Hydrogen-bond geometry (Å, º)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N6—H6A···O3iii | 0.88 | 2.10 | 2.917 (4) | 155 |
| N6—H6B···O3iv | 0.88 | 2.12 | 2.996 (4) | 173 |
| N4—H4A···O4i | 0.88 | 2.25 | 3.101 (4) | 162 |
| N4—H4B···N5v | 0.88 | 2.21 | 3.066 (4) | 163 |
Symmetry codes: (i) x+1, y, z; (iii) −x, −y+2, −z−1; (iv) x+1, y, z−1; (v) x, y−1, z+1.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HB6715).
References
- Das, J., Lin, J., Moquin, R. V., Shen, Z., Spergel, S. H., Wityak, J., Doweyko, A. M., DeFex, H. F., Fang, Q., Pang, S., Pitt, S., Shen, D. R., Schieven, G. L. & Barrish, J. C. (2003). Bioorg. Med. Chem. Lett. 13, 2145–2149. [DOI] [PubMed]
- Fang, X., Lei, C., Yu, H.-Y., Huang, M.-D. & Wang, J.-D. (2010). Acta Cryst. E66, o1239–o1240. [DOI] [PMC free article] [PubMed]
- Higashi, T. (2000). NUMABS Rigaku Corporation, Tokyo, Japan.
- Lei, C., Fang, X., Yu, H.-Y., Huang, M.-D. & Wang, J.-D. (2010). Acta Cryst. E66, o914. [DOI] [PMC free article] [PubMed]
- McArdle, P. (1995). J. Appl. Cryst. 28, 65. [DOI] [PMC free article] [PubMed]
- Rigaku (2007). CrystalClear Rigaku Corporation, Tokyo, Japan.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681201642X/hb6715sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681201642X/hb6715Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report



