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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Apr 13;68(Pt 5):o1364. doi: 10.1107/S1600536812015942

2-[1,1-Dioxo-2-(2,4,5-trifluoro­benz­yl)-2H-1,2-benzothia­zin-4-yl]acetic acid

Yanchun Yang a, Youzhu Yu b, Changjin Zhu a,*
PMCID: PMC3344496  PMID: 22590258

Abstract

In the title compound, C17H12F3NO4S, the heterocyclic thia­zine ring adopts a half-chair conformation with the S and the N atoms displaced by −0.608 (3) and 0.105 (3) Å, respectively, from the mean plane formed by the remaining ring atoms. The dihedral angle between the two benzene rings is 36.63 (8)° and the acetic acid group is inclined at right angles [89.78 (8) °] to the mean plane formed by the C atoms of the thia­zine ring. The crystal structure features O—H⋯O and C—H⋯O hydrogen bonds.

Related literature  

For pharmaceuticals properties of benzothia­zines, see: Zia-ur-Rehman et al. (2006). For synthetic details of the title compound, see: Chen et al. (2011). For related structures, see: Ahmad et al. (2008); Zia-ur-Rehman et al. (2008). graphic file with name e-68-o1364-scheme1.jpg

Experimental  

Crystal data  

  • C17H12F3NO4S

  • M r = 383.34

  • Monoclinic, Inline graphic

  • a = 8.3290 (17) Å

  • b = 23.141 (5) Å

  • c = 8.6692 (17) Å

  • β = 90.93 (3)°

  • V = 1670.7 (6) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.25 mm−1

  • T = 293 K

  • 0.20 × 0.20 × 0.20 mm

Data collection  

  • Bruker APEXII CCD diffractometer

  • 22476 measured reflections

  • 4158 independent reflections

  • 3646 reflections with I > 2σ(I)

  • R int = 0.023

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.039

  • wR(F 2) = 0.108

  • S = 1.03

  • 4158 reflections

  • 239 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.32 e Å−3

  • Δρmin = −0.40 e Å−3

Data collection: APEX2 (Bruker, 2005); cell refinement: SAINT-Plus (Bruker, 2001); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812015942/pv2523sup1.cif

e-68-o1364-sup1.cif (17.6KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812015942/pv2523Isup2.hkl

e-68-o1364-Isup2.hkl (203.8KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812015942/pv2523Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O1—H1⋯O2i 0.84 (3) 1.83 (3) 2.675 (2) 179 (3)
C8—H8⋯O3ii 0.93 2.55 3.211 (2) 129
C9—H9A⋯O3ii 0.97 2.30 3.207 (2) 155
C11—H11B⋯O4iii 0.97 2.40 3.162 (2) 135

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

This work was supported by the Beijing Natural Science Foundation (No. 7102091) and the Research Fund for the Doctoral Program of Higher Education of China (No. 20111101110042).

supplementary crystallographic information

Comment

Benzothiazine moiety is present as the skeletal structure in several pharmaceuticals such as antibacterial, diuretic, hypoglycemic, antithyroid, and antitumor drugs (Zia-ur-Rehman et al., 2006). In this article, we report the crystal structure of the title compound which has been used as aldose reductase inhibitor (Chen et al., 2011).

In the title compound (Fig. 1), the heterocyclic thiazine ring adopts a half chair conformation with the S1 and the N1 atoms displaced by -0.608 (3) and 0.105 (3) Å, respectively, from the mean plane formed by the remaining ring atoms (C1/C6/C7/C8). The dihedral angle between the two benze rings (C1–C6) and (C12–C17) is 36.63 (8)° and the acetate group (O1/O2/C9/C10) is inclined at right angles (89.78 (8) °) to the mean plane formed by the C-atoms of the thiazine ring. The crystal structure is stabilized by intermolecular O—H···O and C—H···O hydrogen bonds forming a three-dimensional network (Fig. 2).

Experimental

A mixture of methyl 2-(1,1-dioxido-2-(2,4,5-trifluorobenzyl)-2H-benzo[e][1,2] thiazin-4-yl)acetate (0.5 mmol), 1,4-dioxane (5 ml) and saturated aqueous sodium hydroxide (8 ml) was stirred at room temperature for 12 h. The alkaline suspension was adjusted to be acidic with 0.1 M HCl and extracted with ethyl acetate (3 x 30 ml). The combined organic layers were dried over MgSO4 and filtered. Crystals suitable for X-ray diffraction were obtained by slow evaporation of a solution of the title compound in methanol (yield = 69%).

Refinement

H atom bonded to O1 was located from a different Fourier map and refined freely. The remaining H atoms were positioned geometrically, with C—H = 0.93 and 0.97 Å for aromatic and methylene H, respectively, and constrained to ride on their parent atoms with Uiso(H) = 1.2Ueq(C).

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound with the atom numbering scheme. Displacement ellipsoids are drawn at the 30% probability level. H atoms are presented as small spheres of arbitrary radius.

Fig. 2.

Fig. 2.

A view of the O—H···O and C—-H···O hydrogen bonds (dotted lines) in the crystal structure of the title compound.

Crystal data

C17H12F3NO4S F(000) = 784
Mr = 383.34 Dx = 1.524 Mg m3
Monoclinic, P21/n Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2yn Cell parameters from 9975 reflections
a = 8.3290 (17) Å θ = 2.5–28.4°
b = 23.141 (5) Å µ = 0.25 mm1
c = 8.6692 (17) Å T = 293 K
β = 90.93 (3)° Block, colorless
V = 1670.7 (6) Å3 0.20 × 0.20 × 0.20 mm
Z = 4

Data collection

Bruker APEXII CCD diffractometer 3646 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tube Rint = 0.023
Graphite monochromator θmax = 28.4°, θmin = 2.5°
φ and ω scans h = −11→11
22476 measured reflections k = −27→30
4158 independent reflections l = −11→11

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.108 H atoms treated by a mixture of independent and constrained refinement
S = 1.03 w = 1/[σ2(Fo2) + (0.0536P)2 + 0.5773P] where P = (Fo2 + 2Fc2)/3
4158 reflections (Δ/σ)max < 0.001
239 parameters Δρmax = 0.32 e Å3
0 restraints Δρmin = −0.40 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
S1 0.11950 (4) 0.232698 (14) 0.97865 (4) 0.03556 (11)
F1 0.69758 (14) 0.21289 (5) 0.89004 (16) 0.0722 (3)
F2 0.6328 (2) 0.02123 (6) 0.73067 (19) 0.0989 (5)
F3 0.3601 (2) 0.01403 (5) 0.8862 (2) 0.0997 (5)
O1 0.4665 (2) 0.48147 (7) 0.79699 (18) 0.0807 (5)
H1 0.504 (4) 0.5074 (14) 0.855 (3) 0.107 (10)*
O2 0.41807 (19) 0.43626 (6) 1.01497 (15) 0.0686 (4)
O3 0.08188 (15) 0.19719 (5) 1.10801 (14) 0.0526 (3)
O4 0.08941 (14) 0.20919 (5) 0.82864 (12) 0.0463 (3)
N1 0.30918 (15) 0.25127 (5) 0.99625 (14) 0.0389 (3)
C1 0.02950 (17) 0.30051 (6) 0.99039 (15) 0.0348 (3)
C2 −0.11807 (18) 0.30537 (7) 1.06150 (18) 0.0419 (3)
H2 −0.1616 0.2741 1.1136 0.050*
C3 −0.19919 (19) 0.35725 (8) 1.0537 (2) 0.0504 (4)
H3 −0.2977 0.3614 1.1014 0.060*
C4 −0.1331 (2) 0.40320 (7) 0.9744 (2) 0.0525 (4)
H4 −0.1901 0.4376 0.9658 0.063*
C5 0.0162 (2) 0.39876 (7) 0.90794 (19) 0.0453 (3)
H5 0.0589 0.4304 0.8568 0.054*
C6 0.10414 (17) 0.34714 (6) 0.91652 (15) 0.0354 (3)
C7 0.26885 (18) 0.34231 (6) 0.86404 (16) 0.0379 (3)
C8 0.36224 (18) 0.29773 (6) 0.90869 (17) 0.0387 (3)
H8 0.4691 0.2980 0.8792 0.046*
C9 0.3439 (2) 0.39103 (6) 0.77500 (19) 0.0448 (3)
H9A 0.4296 0.3755 0.7128 0.054*
H9B 0.2636 0.4074 0.7054 0.054*
C10 0.41079 (18) 0.43834 (6) 0.87590 (19) 0.0433 (3)
C11 0.4227 (2) 0.21175 (7) 1.07534 (18) 0.0448 (3)
H11A 0.3728 0.1972 1.1679 0.054*
H11B 0.5170 0.2336 1.1071 0.054*
C12 0.47589 (19) 0.16095 (7) 0.97972 (17) 0.0419 (3)
C13 0.6136 (2) 0.16311 (7) 0.8936 (2) 0.0480 (4)
C14 0.6717 (2) 0.11724 (9) 0.8094 (2) 0.0594 (4)
H14 0.7667 0.1200 0.7549 0.071*
C15 0.5833 (3) 0.06758 (8) 0.8099 (2) 0.0636 (5)
C16 0.4443 (3) 0.06386 (8) 0.8907 (3) 0.0635 (5)
C17 0.3901 (2) 0.10940 (7) 0.9768 (2) 0.0532 (4)
H17 0.2964 0.1058 1.0329 0.064*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S1 0.04325 (19) 0.02765 (17) 0.03590 (18) −0.00299 (12) 0.00411 (13) 0.00177 (12)
F1 0.0606 (7) 0.0529 (6) 0.1035 (9) −0.0118 (5) 0.0109 (6) −0.0096 (6)
F2 0.1302 (13) 0.0558 (8) 0.1110 (11) 0.0240 (8) 0.0069 (9) −0.0322 (7)
F3 0.1114 (11) 0.0384 (7) 0.1489 (14) −0.0155 (7) −0.0099 (10) −0.0094 (7)
O1 0.1217 (14) 0.0547 (9) 0.0655 (9) −0.0464 (9) −0.0027 (9) 0.0112 (7)
O2 0.0991 (11) 0.0490 (8) 0.0580 (8) −0.0326 (7) 0.0064 (7) −0.0001 (6)
O3 0.0639 (7) 0.0421 (6) 0.0523 (6) −0.0011 (5) 0.0144 (5) 0.0156 (5)
O4 0.0566 (6) 0.0365 (6) 0.0457 (6) −0.0028 (5) −0.0032 (5) −0.0089 (4)
N1 0.0412 (6) 0.0332 (6) 0.0424 (6) −0.0001 (5) −0.0004 (5) 0.0018 (5)
C1 0.0411 (7) 0.0302 (6) 0.0331 (6) −0.0014 (5) 0.0012 (5) −0.0017 (5)
C2 0.0420 (7) 0.0416 (8) 0.0423 (7) −0.0052 (6) 0.0048 (6) 0.0002 (6)
C3 0.0416 (8) 0.0525 (9) 0.0573 (9) 0.0042 (7) 0.0078 (7) −0.0013 (7)
C4 0.0495 (9) 0.0419 (9) 0.0662 (10) 0.0100 (7) 0.0044 (7) 0.0025 (7)
C5 0.0517 (8) 0.0329 (7) 0.0514 (8) 0.0015 (6) 0.0044 (7) 0.0037 (6)
C6 0.0423 (7) 0.0295 (7) 0.0344 (6) −0.0023 (5) 0.0020 (5) −0.0015 (5)
C7 0.0459 (7) 0.0279 (6) 0.0402 (7) −0.0049 (5) 0.0085 (6) −0.0032 (5)
C8 0.0403 (7) 0.0327 (7) 0.0434 (7) −0.0047 (5) 0.0063 (6) −0.0041 (5)
C9 0.0538 (8) 0.0320 (7) 0.0491 (8) −0.0048 (6) 0.0167 (7) −0.0006 (6)
C10 0.0424 (7) 0.0308 (7) 0.0572 (9) −0.0036 (6) 0.0103 (6) 0.0024 (6)
C11 0.0513 (8) 0.0433 (8) 0.0394 (7) 0.0062 (7) −0.0103 (6) −0.0030 (6)
C12 0.0484 (8) 0.0356 (7) 0.0413 (7) 0.0047 (6) −0.0097 (6) 0.0019 (6)
C13 0.0512 (8) 0.0382 (8) 0.0543 (9) 0.0021 (6) −0.0063 (7) −0.0013 (7)
C14 0.0631 (11) 0.0552 (11) 0.0601 (11) 0.0133 (9) 0.0033 (8) −0.0029 (8)
C15 0.0838 (13) 0.0409 (9) 0.0659 (11) 0.0163 (9) −0.0075 (10) −0.0110 (8)
C16 0.0782 (13) 0.0320 (8) 0.0796 (13) −0.0022 (8) −0.0153 (10) −0.0013 (8)
C17 0.0579 (10) 0.0395 (8) 0.0621 (10) 0.0000 (7) −0.0032 (8) 0.0049 (7)

Geometric parameters (Å, º)

S1—O4 1.4281 (11) C5—C6 1.403 (2)
S1—O3 1.4292 (11) C5—H5 0.9300
S1—N1 1.6420 (13) C6—C7 1.457 (2)
S1—C1 1.7427 (14) C7—C8 1.345 (2)
F1—C13 1.348 (2) C7—C9 1.5076 (19)
F2—C15 1.342 (2) C8—H8 0.9300
F3—C16 1.350 (2) C9—C10 1.503 (2)
O1—C10 1.2998 (19) C9—H9A 0.9700
O1—H1 0.84 (3) C9—H9B 0.9700
O2—C10 1.207 (2) C11—C12 1.509 (2)
N1—C8 1.3923 (18) C11—H11A 0.9700
N1—C11 1.4765 (19) C11—H11B 0.9700
C1—C2 1.388 (2) C12—C13 1.379 (2)
C1—C6 1.4049 (19) C12—C17 1.391 (2)
C2—C3 1.379 (2) C13—C14 1.380 (2)
C2—H2 0.9300 C14—C15 1.365 (3)
C3—C4 1.385 (2) C14—H14 0.9300
C3—H3 0.9300 C15—C16 1.366 (3)
C4—C5 1.383 (2) C16—C17 1.372 (3)
C4—H4 0.9300 C17—H17 0.9300
O4—S1—O3 117.26 (8) C10—C9—C7 113.55 (13)
O4—S1—N1 109.80 (7) C10—C9—H9A 108.9
O3—S1—N1 107.48 (8) C7—C9—H9A 108.9
O4—S1—C1 109.08 (7) C10—C9—H9B 108.9
O3—S1—C1 111.83 (7) C7—C9—H9B 108.9
N1—S1—C1 99.97 (7) H9A—C9—H9B 107.7
C10—O1—H1 111 (2) O2—C10—O1 122.93 (16)
C8—N1—C11 121.67 (13) O2—C10—C9 124.36 (14)
C8—N1—S1 117.70 (10) O1—C10—C9 112.65 (15)
C11—N1—S1 119.28 (11) N1—C11—C12 114.76 (12)
C2—C1—C6 122.78 (13) N1—C11—H11A 108.6
C2—C1—S1 118.92 (11) C12—C11—H11A 108.6
C6—C1—S1 118.10 (10) N1—C11—H11B 108.6
C3—C2—C1 119.04 (14) C12—C11—H11B 108.6
C3—C2—H2 120.5 H11A—C11—H11B 107.6
C1—C2—H2 120.5 C13—C12—C17 116.91 (15)
C2—C3—C4 119.63 (15) C13—C12—C11 121.54 (14)
C2—C3—H3 120.2 C17—C12—C11 121.54 (15)
C4—C3—H3 120.2 F1—C13—C12 118.65 (15)
C5—C4—C3 121.14 (15) F1—C13—C14 117.28 (16)
C5—C4—H4 119.4 C12—C13—C14 124.07 (16)
C3—C4—H4 119.4 C15—C14—C13 116.87 (18)
C4—C5—C6 120.89 (14) C15—C14—H14 121.6
C4—C5—H5 119.6 C13—C14—H14 121.6
C6—C5—H5 119.6 F2—C15—C14 120.1 (2)
C5—C6—C1 116.36 (13) F2—C15—C16 118.81 (19)
C5—C6—C7 122.84 (13) C14—C15—C16 121.11 (17)
C1—C6—C7 120.62 (13) F3—C16—C15 118.92 (19)
C8—C7—C6 120.81 (13) F3—C16—C17 119.8 (2)
C8—C7—C9 118.58 (13) C15—C16—C17 121.31 (17)
C6—C7—C9 120.18 (13) C16—C17—C12 119.69 (18)
C7—C8—N1 124.19 (13) C16—C17—H17 120.2
C7—C8—H8 117.9 C12—C17—H17 120.2
N1—C8—H8 117.9

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
O1—H1···O2i 0.84 (3) 1.83 (3) 2.675 (2) 179 (3)
C8—H8···O3ii 0.93 2.55 3.211 (2) 129
C9—H9A···O3ii 0.97 2.30 3.207 (2) 155
C11—H11A···O3 0.97 2.47 2.877 (2) 105
C11—H11B···F1 0.97 2.47 2.818 (2) 101
C11—H11B···O4iii 0.97 2.40 3.162 (2) 135

Symmetry codes: (i) −x+1, −y+1, −z+2; (ii) x+1/2, −y+1/2, z−1/2; (iii) x+1/2, −y+1/2, z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: PV2523).

References

  1. Ahmad, M., Latif Siddiqui, H., Zia-ur-Rehman, M., Tizzard, G. J. & Ahmad, S. (2008). Acta Cryst. E64, o1392. [DOI] [PMC free article] [PubMed]
  2. Bruker (2001). SAINT-Plus Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Bruker (2005). APEX2 Bruker AXS Inc., Madison, Wisconsin, USA.
  4. Chen, X., Zhang, S., Yang, Y., Hussain, S., He, M., Gui, D., Ma, B., Jing, C., Qiao, Z., Zhu, C. & Yu, Q. (2011). Bioorg. Med. Chem. 19, 7262–7269. [DOI] [PubMed]
  5. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  6. Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]
  7. Zia-ur-Rehman, M., Choudary, J. A., Ahmad, S. & Siddiqui, H. L. (2006). Chem. Pharm. Bull. 54, 1175–1178. [DOI] [PubMed]
  8. Zia-ur-Rehman, M., Choudary, J. A., Elsegood, M. R. J., Akbar, N. & Latif Siddiqui, H. (2008). Acta Cryst. E64, o1508. [DOI] [PMC free article] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812015942/pv2523sup1.cif

e-68-o1364-sup1.cif (17.6KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812015942/pv2523Isup2.hkl

e-68-o1364-Isup2.hkl (203.8KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812015942/pv2523Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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