Abstract
Two independent molecules comprise the asymmetric unit of the title compound, C13H19N3OS, which differ in the conformations of the residues linking the thiourea and the terminal benzene ring, as manifested in the Cm—Cm—Ca—Ca torsion angles [78.03 (16) and −93.64 (16)°, respectively; m = methylene and a = aromatic]. The dihedral angles [84.40 (4) and 88.28 (5)°] formed between the thiourea residue and the benzene ring indicate an almost orthogonal relationship. In each thiourea residue, the N—H hydrogen atoms are anti, and the terminal N—H hydrogen atom forms an intramolecular N—H⋯N hydrogen bond with the imine-N atom. In each case, the conformation about the imine C=N double bond [1.2812 (17) and 1.2801 (17) Å] is E. In the crystal, the molecules are connected by N—H⋯S hydrogen bonds and these are connected into four molecule aggregates via N—H⋯O hydrogen bonds, which are assembled into a two-dimensional array parallel to (011) via C—H⋯π and π–π interactions [ring centroid–centroid distance = 3.8344 (9) Å].
Related literature
For background to chalcone thiosemicarbazides, see: Zhang et al. (2011 ▶). For background to hydrazinecarbodithioates, see: Khoo et al. (2005 ▶); Chan et al. (2008 ▶); Ravoof et al. (2010 ▶). For related syntheses, see: Tian et al. (1997 ▶); Tarafder et al. (2002 ▶).
Experimental
Crystal data
C13H19N3OS
M r = 265.37
Triclinic,
a = 9.6344 (4) Å
b = 11.1759 (6) Å
c = 13.4619 (8) Å
α = 80.324 (5)°
β = 87.103 (4)°
γ = 76.360 (4)°
V = 1388.48 (13) Å3
Z = 4
Cu Kα radiation
μ = 2.01 mm−1
T = 100 K
0.41 × 0.23 × 0.14 mm
Data collection
Oxford Diffraction Xcaliber Eos Gemini diffractometer
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.51, T max = 0.75
18287 measured reflections
5312 independent reflections
4995 reflections with I > 2σ(I)
R int = 0.022
Refinement
R[F 2 > 2σ(F 2)] = 0.037
wR(F 2) = 0.101
S = 1.01
5312 reflections
343 parameters
4 restraints
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.29 e Å−3
Δρmin = −0.41 e Å−3
Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶), DIAMOND (Brandenburg, 2006 ▶) and Qmol (Gans & Shalloway, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶).
Supplementary Material
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681201611X/qm2063sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681201611X/qm2063Isup2.hkl
Supplementary material file. DOI: 10.1107/S160053681201611X/qm2063Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
Cg1 is the centroid of the C7–C12 ring.
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N1—H1n⋯N3 | 0.87 (1) | 2.15 (1) | 2.5931 (16) | 111 (1) |
| N4—H4n⋯N6 | 0.87 (1) | 2.13 (1) | 2.5818 (17) | 112 (1) |
| N2—H2n⋯S2 | 0.87 (1) | 2.70 (1) | 3.5686 (11) | 176 (1) |
| N5—H5n⋯S1 | 0.88 (1) | 2.65 (1) | 3.5276 (11) | 178 (1) |
| N1—H1n⋯O2i | 0.87 (1) | 2.51 (2) | 3.0979 (16) | 125 (1) |
| C1—H1B⋯Cg1ii | 0.98 | 2.94 | 3.5930 (17) | 125 |
Symmetry codes: (i)
; (ii)
.
Acknowledgments
Support for the project came from Universiti Putra Malaysia (UPM) under their research University Grant Scheme (RUGS Nos. 9199834 and 9174000) and from the Malaysian Ministry of Science, Technology and Innovation (grant No. 09–02-04–0752-EA001). MYT wishes to thank UPM for a Graduate Research Fellowship award. We also thank the Ministry of Higher Education (Malaysia) for funding structural studies through the High-Impact Research scheme (UM.C/HIR/MOHE/SC/12).
supplementary crystallographic information
Comment
To initiate comparative studies between hydrazinecarbothioamide Schiff bases (Zhang et al., 2011) and hydrazinecarbodithioate derivatives synthesized in our laboratory in on-going investigations (Khoo et al. 2005; Chan et al. 2008; Ravoof et al., 2010), the title compound was synthesized and characterized crystallographically.
Two independent molecules comprise the asymmetric unit of (I), Fig. 1. As evidenced from the overlay diagram, Fig. 2, while the thiourea residues are super-imposable, minor conformational differences are seen in the links between these and the terminal benzene rings. Significant differences are noted between the chemically equivalent C5—C6—C7—C8 and C18—C19—C20—C21 torsion angles of 78.03 (16) and -93.64 (16)°, respectively. The dihedral angles formed between the thiourea residues (N1,C1,S1,N2 and N4,C15,S2,N5) and the benzene rings are 84.40 (4) and 88.28 (5)°, respectively. In each case, the methoxy group is co-planar with the benzene ring to which it is connected as seen in the values of the C13—O1—C10—C9 and C26—O2—C23—C22 torsion angles of 175.41 (12) and -5.62 (19)°, respectively. In each thiourea residue, the N—H hydrogen atoms are anti, and the terminal N—H hydrogen atom forms an intramolecular N—H···N hydrogen bond with the imine-N atom, Table 1. The conformation about the imine C═N double bond [N3═C3 = 1.2812 (17) Å and N6═C16 = 1.2801 (17) Å] is E in each case.
As indicated in Fig. 1, the independent molecules are connected by N—H···S hydrogen bonds leading to an eight-membered {···HNCS}2 synthon, Table 1. These are connected into four molecule aggregates via N—H···O hydrogen bonds, Table 1. The four molecule aggregates are assembled into a two-dimensional array parallel to (011) via C—H···π, Table 1, and π–π interactions occurring between the benzene rings [ring centroid(C7–C12)···centroid(C20–C25)i distance = 3.8344 (9) Å with a tilt angle = 2.08 (7)° for symmetry operation i: 1 + x, -1 + y, 1 + z). Layers stack without significant intermolecular interactions between them, Fig. 4.
Experimental
The title compound was synthesized following established literature procedures (Tian et al. 1997; Tarafder et al. 2002). To 4-methyl-3-thiosemicarbazide (1.05 g, 10 mmol) dissolved in hot absolute ethanol (25 ml) was added an equimolar amount of 4-(4-methoxyphenyl)butan-2-one (1.70 ml) also in hot absolute ethanol (20 ml). The mixture was stirred for about half an hour at ~340 K and then cooled to room temperature. The Schiff base precipitated was filtered and dried in vacuo over anhydrous silica gel. Colourless crystals were obtained after one week from a 1:1 mixture of 2-propanol and absolute ethanol. Yield 76%, M.pt. 356 K.
Refinement
Carbon-bound H-atoms were placed in calculated positions (C—H = 0.95 to 0.99 Å) and were included in the refinement in the riding model approximation with Uiso(H) set to 1.2 to 1.5Uequiv(C). The amino H-atoms were refined with a distance restraint of N—H = 0.88±0.01 Å, and with Uiso(H) = 1.2Ueq(N).
Figures
Fig. 1.
The molecular structure of the two independent molecules in (I) showing the atom-labelling scheme and displacement ellipsoids at the 50% probability level. Hydrogen bonds are shown as dashed lines.
Fig. 2.
An overlay diagram of two independent molecules in (I). The S1-containing molecule is illustrated in red and the S2-molecule in blue. Molecules have been aligned so that the N1,S1,N2 and N4,S2,N5 planes are overlapped.
Fig. 3.
A view of the supramolecular layer parallel to (011) in (I) mediated by N—H···S, N—H···O, C—H···π and π–π interactions shown as blue, orange, brown and purple dashed lines, respectively.
Fig. 4.
A view in projection down the a axis of the unit-cell contents for (I). The N—H···S, N—H···O, C—H···π and π–π interactions shown as blue, orange, brown and purple dashed lines, respectively.
Crystal data
| C13H19N3OS | Z = 4 |
| Mr = 265.37 | F(000) = 568 |
| Triclinic, P1 | Dx = 1.269 Mg m−3 |
| Hall symbol: -P 1 | Cu Kα radiation, λ = 1.54180 Å |
| a = 9.6344 (4) Å | Cell parameters from 10673 reflections |
| b = 11.1759 (6) Å | θ = 3–71° |
| c = 13.4619 (8) Å | µ = 2.01 mm−1 |
| α = 80.324 (5)° | T = 100 K |
| β = 87.103 (4)° | Prism, colourless |
| γ = 76.360 (4)° | 0.41 × 0.23 × 0.14 mm |
| V = 1388.48 (13) Å3 |
Data collection
| Oxford Diffraction Xcaliber Eos Gemini diffractometer | 5312 independent reflections |
| Radiation source: sealed X-ray tube | 4995 reflections with I > 2σ(I) |
| Graphite monochromator | Rint = 0.022 |
| Detector resolution: 16.1952 pixels mm-1 | θmax = 71.6°, θmin = 3.3° |
| ω/2θ scans | h = −11→11 |
| Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011) | k = −13→13 |
| Tmin = 0.51, Tmax = 0.75 | l = −16→16 |
| 18287 measured reflections |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.037 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.101 | H atoms treated by a mixture of independent and constrained refinement |
| S = 1.01 | w = 1/[σ2(Fo2) + (0.065P)2 + 0.5168P] where P = (Fo2 + 2Fc2)/3 |
| 5312 reflections | (Δ/σ)max = 0.001 |
| 343 parameters | Δρmax = 0.29 e Å−3 |
| 4 restraints | Δρmin = −0.41 e Å−3 |
Special details
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| S1 | 0.20415 (3) | 0.32321 (3) | 0.48243 (2) | 0.01907 (11) | |
| O1 | 1.27782 (10) | −0.24724 (9) | 0.93804 (7) | 0.0204 (2) | |
| N1 | 0.34458 (12) | 0.15989 (11) | 0.63195 (9) | 0.0183 (2) | |
| H1N | 0.4267 (12) | 0.1245 (15) | 0.6602 (12) | 0.022* | |
| N2 | 0.47979 (11) | 0.26896 (10) | 0.52508 (8) | 0.0144 (2) | |
| H2N | 0.4854 (17) | 0.3310 (12) | 0.4776 (10) | 0.017* | |
| N3 | 0.59623 (11) | 0.19555 (10) | 0.57947 (8) | 0.0145 (2) | |
| C1 | 0.21511 (15) | 0.11973 (14) | 0.66758 (12) | 0.0241 (3) | |
| H1A | 0.1413 | 0.1919 | 0.6817 | 0.036* | |
| H1B | 0.2356 | 0.0584 | 0.7293 | 0.036* | |
| H1C | 0.1813 | 0.0818 | 0.6157 | 0.036* | |
| C2 | 0.34971 (14) | 0.24605 (12) | 0.55167 (10) | 0.0147 (3) | |
| C3 | 0.71806 (14) | 0.22229 (12) | 0.56058 (10) | 0.0147 (3) | |
| C4 | 0.74688 (14) | 0.32895 (13) | 0.48538 (10) | 0.0182 (3) | |
| H4A | 0.7270 | 0.3172 | 0.4174 | 0.027* | |
| H4B | 0.8472 | 0.3322 | 0.4892 | 0.027* | |
| H4C | 0.6853 | 0.4072 | 0.5003 | 0.027* | |
| C5 | 0.84347 (14) | 0.13959 (13) | 0.61947 (10) | 0.0170 (3) | |
| H5A | 0.8808 | 0.1903 | 0.6607 | 0.020* | |
| H5B | 0.9199 | 0.1102 | 0.5713 | 0.020* | |
| C6 | 0.81204 (14) | 0.02645 (13) | 0.68873 (11) | 0.0206 (3) | |
| H6A | 0.7314 | 0.0545 | 0.7343 | 0.025* | |
| H6B | 0.7824 | −0.0286 | 0.6476 | 0.025* | |
| C7 | 0.93936 (14) | −0.04719 (13) | 0.75113 (10) | 0.0174 (3) | |
| C8 | 0.97580 (14) | −0.00550 (13) | 0.83614 (10) | 0.0174 (3) | |
| H8 | 0.9211 | 0.0709 | 0.8534 | 0.021* | |
| C9 | 1.08986 (14) | −0.07296 (13) | 0.89598 (10) | 0.0165 (3) | |
| H9 | 1.1128 | −0.0427 | 0.9535 | 0.020* | |
| C10 | 1.17070 (14) | −0.18502 (13) | 0.87166 (10) | 0.0164 (3) | |
| C11 | 1.13875 (15) | −0.22751 (13) | 0.78626 (11) | 0.0206 (3) | |
| H11 | 1.1945 | −0.3033 | 0.7685 | 0.025* | |
| C12 | 1.02383 (16) | −0.15758 (13) | 0.72690 (11) | 0.0209 (3) | |
| H12 | 1.0028 | −0.1864 | 0.6682 | 0.025* | |
| C13 | 1.35572 (17) | −0.36669 (14) | 0.91966 (12) | 0.0280 (3) | |
| H13A | 1.2909 | −0.4232 | 0.9244 | 0.042* | |
| H13B | 1.4311 | −0.4003 | 0.9699 | 0.042* | |
| H13C | 1.3988 | −0.3588 | 0.8521 | 0.042* | |
| S2 | 0.50040 (3) | 0.51322 (3) | 0.32073 (2) | 0.01570 (10) | |
| O2 | −0.50895 (10) | 0.90797 (9) | −0.24093 (7) | 0.0197 (2) | |
| N4 | 0.35843 (12) | 0.67030 (11) | 0.16874 (9) | 0.0175 (2) | |
| H4N | 0.2787 (13) | 0.6966 (15) | 0.1361 (12) | 0.021* | |
| N5 | 0.22689 (12) | 0.55527 (10) | 0.27342 (8) | 0.0151 (2) | |
| H5N | 0.2193 (17) | 0.4984 (13) | 0.3255 (9) | 0.018* | |
| N6 | 0.11708 (12) | 0.60815 (10) | 0.20570 (8) | 0.0156 (2) | |
| C14 | 0.48459 (14) | 0.71634 (14) | 0.13471 (11) | 0.0214 (3) | |
| H14A | 0.5147 | 0.7551 | 0.1875 | 0.032* | |
| H14B | 0.4623 | 0.7782 | 0.0735 | 0.032* | |
| H14C | 0.5618 | 0.6467 | 0.1202 | 0.032* | |
| C15 | 0.35546 (14) | 0.58411 (12) | 0.24972 (10) | 0.0140 (3) | |
| C16 | −0.00410 (14) | 0.58042 (12) | 0.22484 (10) | 0.0152 (3) | |
| C17 | −0.04030 (15) | 0.49618 (14) | 0.31617 (11) | 0.0209 (3) | |
| H17A | 0.0148 | 0.4107 | 0.3147 | 0.031* | |
| H17B | −0.1426 | 0.4982 | 0.3166 | 0.031* | |
| H17C | −0.0168 | 0.5244 | 0.3770 | 0.031* | |
| C18 | −0.11934 (14) | 0.63481 (13) | 0.14771 (10) | 0.0181 (3) | |
| H18A | −0.1999 | 0.6888 | 0.1793 | 0.022* | |
| H18B | −0.1550 | 0.5657 | 0.1287 | 0.022* | |
| C19 | −0.07400 (15) | 0.71084 (14) | 0.05199 (11) | 0.0225 (3) | |
| H19A | −0.0429 | 0.7827 | 0.0700 | 0.027* | |
| H19B | 0.0088 | 0.6584 | 0.0212 | 0.027* | |
| C20 | −0.19197 (14) | 0.75844 (13) | −0.02456 (10) | 0.0189 (3) | |
| C21 | −0.20533 (16) | 0.69260 (14) | −0.10058 (12) | 0.0241 (3) | |
| H21 | −0.1412 | 0.6142 | −0.1027 | 0.029* | |
| C22 | −0.31004 (16) | 0.73782 (13) | −0.17421 (11) | 0.0229 (3) | |
| H22 | −0.3162 | 0.6911 | −0.2260 | 0.027* | |
| C23 | −0.40494 (14) | 0.85161 (12) | −0.17094 (10) | 0.0161 (3) | |
| C24 | −0.39597 (14) | 0.91792 (13) | −0.09373 (10) | 0.0166 (3) | |
| H24 | −0.4620 | 0.9952 | −0.0905 | 0.020* | |
| C25 | −0.29074 (14) | 0.87139 (13) | −0.02154 (10) | 0.0183 (3) | |
| H25 | −0.2858 | 0.9173 | 0.0310 | 0.022* | |
| C26 | −0.50890 (16) | 0.84812 (14) | −0.32718 (11) | 0.0236 (3) | |
| H26A | −0.4153 | 0.8393 | −0.3609 | 0.035* | |
| H26B | −0.5828 | 0.8987 | −0.3740 | 0.035* | |
| H26C | −0.5286 | 0.7655 | −0.3056 | 0.035* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| S1 | 0.01121 (17) | 0.02285 (19) | 0.01953 (19) | −0.00212 (13) | −0.00427 (12) | 0.00540 (14) |
| O1 | 0.0189 (5) | 0.0203 (5) | 0.0185 (5) | 0.0022 (4) | −0.0064 (4) | −0.0012 (4) |
| N1 | 0.0115 (5) | 0.0217 (6) | 0.0190 (6) | −0.0038 (4) | −0.0029 (4) | 0.0054 (5) |
| N2 | 0.0122 (5) | 0.0158 (6) | 0.0133 (5) | −0.0030 (4) | −0.0032 (4) | 0.0036 (4) |
| N3 | 0.0124 (5) | 0.0160 (5) | 0.0134 (5) | −0.0012 (4) | −0.0033 (4) | 0.0007 (4) |
| C1 | 0.0135 (6) | 0.0271 (8) | 0.0276 (8) | −0.0058 (6) | −0.0012 (6) | 0.0089 (6) |
| C2 | 0.0122 (6) | 0.0166 (6) | 0.0147 (6) | −0.0021 (5) | −0.0018 (5) | −0.0020 (5) |
| C3 | 0.0131 (6) | 0.0177 (6) | 0.0130 (6) | −0.0036 (5) | −0.0012 (5) | −0.0010 (5) |
| C4 | 0.0138 (6) | 0.0226 (7) | 0.0164 (6) | −0.0055 (5) | −0.0020 (5) | 0.0046 (5) |
| C5 | 0.0120 (6) | 0.0200 (7) | 0.0171 (6) | −0.0038 (5) | −0.0024 (5) | 0.0032 (5) |
| C6 | 0.0152 (6) | 0.0220 (7) | 0.0224 (7) | −0.0057 (5) | −0.0056 (5) | 0.0060 (6) |
| C7 | 0.0139 (6) | 0.0188 (7) | 0.0176 (6) | −0.0059 (5) | −0.0019 (5) | 0.0056 (5) |
| C8 | 0.0151 (6) | 0.0160 (6) | 0.0187 (7) | −0.0024 (5) | 0.0014 (5) | 0.0019 (5) |
| C9 | 0.0165 (6) | 0.0192 (7) | 0.0136 (6) | −0.0055 (5) | −0.0002 (5) | 0.0001 (5) |
| C10 | 0.0134 (6) | 0.0197 (7) | 0.0142 (6) | −0.0039 (5) | −0.0014 (5) | 0.0031 (5) |
| C11 | 0.0221 (7) | 0.0181 (7) | 0.0192 (7) | −0.0007 (5) | −0.0024 (5) | −0.0017 (5) |
| C12 | 0.0253 (7) | 0.0209 (7) | 0.0166 (7) | −0.0060 (6) | −0.0059 (6) | −0.0003 (5) |
| C13 | 0.0268 (8) | 0.0250 (8) | 0.0263 (8) | 0.0076 (6) | −0.0089 (6) | −0.0044 (6) |
| S2 | 0.01168 (16) | 0.01806 (18) | 0.01548 (17) | −0.00205 (12) | −0.00432 (12) | 0.00184 (13) |
| O2 | 0.0198 (5) | 0.0215 (5) | 0.0161 (5) | 0.0002 (4) | −0.0070 (4) | −0.0032 (4) |
| N4 | 0.0121 (5) | 0.0198 (6) | 0.0181 (6) | −0.0039 (4) | −0.0049 (4) | 0.0057 (5) |
| N5 | 0.0121 (5) | 0.0171 (6) | 0.0139 (5) | −0.0029 (4) | −0.0038 (4) | 0.0042 (4) |
| N6 | 0.0132 (5) | 0.0169 (6) | 0.0149 (5) | −0.0021 (4) | −0.0042 (4) | 0.0014 (4) |
| C14 | 0.0158 (6) | 0.0245 (7) | 0.0231 (7) | −0.0090 (6) | −0.0034 (5) | 0.0058 (6) |
| C15 | 0.0132 (6) | 0.0136 (6) | 0.0150 (6) | −0.0018 (5) | −0.0016 (5) | −0.0032 (5) |
| C16 | 0.0134 (6) | 0.0162 (6) | 0.0151 (6) | −0.0026 (5) | −0.0014 (5) | −0.0005 (5) |
| C17 | 0.0150 (6) | 0.0270 (8) | 0.0191 (7) | −0.0076 (6) | −0.0027 (5) | 0.0051 (6) |
| C18 | 0.0138 (6) | 0.0224 (7) | 0.0176 (7) | −0.0067 (5) | −0.0030 (5) | 0.0030 (5) |
| C19 | 0.0152 (6) | 0.0299 (8) | 0.0199 (7) | −0.0077 (6) | −0.0044 (5) | 0.0077 (6) |
| C20 | 0.0147 (6) | 0.0236 (7) | 0.0165 (7) | −0.0073 (5) | −0.0010 (5) | 0.0061 (5) |
| C21 | 0.0217 (7) | 0.0197 (7) | 0.0258 (7) | 0.0027 (6) | −0.0046 (6) | 0.0015 (6) |
| C22 | 0.0256 (7) | 0.0211 (7) | 0.0211 (7) | −0.0012 (6) | −0.0049 (6) | −0.0054 (6) |
| C23 | 0.0146 (6) | 0.0181 (7) | 0.0143 (6) | −0.0050 (5) | −0.0026 (5) | 0.0031 (5) |
| C24 | 0.0153 (6) | 0.0172 (7) | 0.0157 (6) | −0.0027 (5) | 0.0002 (5) | 0.0005 (5) |
| C25 | 0.0186 (6) | 0.0248 (7) | 0.0129 (6) | −0.0095 (5) | −0.0007 (5) | −0.0009 (5) |
| C26 | 0.0269 (7) | 0.0262 (8) | 0.0181 (7) | −0.0043 (6) | −0.0084 (6) | −0.0045 (6) |
Geometric parameters (Å, º)
| S1—C2 | 1.6943 (13) | S2—C15 | 1.6881 (13) |
| O1—C10 | 1.3759 (16) | O2—C23 | 1.3736 (16) |
| O1—C13 | 1.4236 (17) | O2—C26 | 1.4341 (16) |
| N1—C2 | 1.3284 (18) | N4—C15 | 1.3319 (18) |
| N1—C1 | 1.4556 (17) | N4—C14 | 1.4530 (17) |
| N1—H1N | 0.871 (9) | N4—H4n | 0.869 (9) |
| N2—C2 | 1.3563 (17) | N5—C15 | 1.3616 (17) |
| N2—N3 | 1.3837 (15) | N5—N6 | 1.3860 (15) |
| N2—H2N | 0.870 (9) | N5—H5n | 0.875 (9) |
| N3—C3 | 1.2812 (17) | N6—C16 | 1.2801 (17) |
| C1—H1A | 0.9800 | C14—H14A | 0.9800 |
| C1—H1B | 0.9800 | C14—H14B | 0.9800 |
| C1—H1C | 0.9800 | C14—H14C | 0.9800 |
| C3—C4 | 1.4983 (18) | C16—C17 | 1.4974 (19) |
| C3—C5 | 1.5054 (17) | C16—C18 | 1.5055 (17) |
| C4—H4A | 0.9800 | C17—H17A | 0.9800 |
| C4—H4B | 0.9800 | C17—H17B | 0.9800 |
| C4—H4C | 0.9800 | C17—H17C | 0.9800 |
| C5—C6 | 1.5217 (19) | C18—C19 | 1.5242 (19) |
| C5—H5A | 0.9900 | C18—H18A | 0.9900 |
| C5—H5B | 0.9900 | C18—H18B | 0.9900 |
| C6—C7 | 1.5110 (18) | C19—C20 | 1.5119 (18) |
| C6—H6A | 0.9900 | C19—H19A | 0.9900 |
| C6—H6B | 0.9900 | C19—H19B | 0.9900 |
| C7—C12 | 1.388 (2) | C20—C21 | 1.384 (2) |
| C7—C8 | 1.395 (2) | C20—C25 | 1.396 (2) |
| C8—C9 | 1.3855 (19) | C21—C22 | 1.396 (2) |
| C8—H8 | 0.9500 | C21—H21 | 0.9500 |
| C9—C10 | 1.3908 (19) | C22—C23 | 1.3863 (19) |
| C9—H9 | 0.9500 | C22—H22 | 0.9500 |
| C10—C11 | 1.3893 (19) | C23—C24 | 1.3911 (19) |
| C11—C12 | 1.3952 (19) | C24—C25 | 1.3870 (19) |
| C11—H11 | 0.9500 | C24—H24 | 0.9500 |
| C12—H12 | 0.9500 | C25—H25 | 0.9500 |
| C13—H13A | 0.9800 | C26—H26A | 0.9800 |
| C13—H13B | 0.9800 | C26—H26B | 0.9800 |
| C13—H13C | 0.9800 | C26—H26C | 0.9800 |
| C10—O1—C13 | 116.80 (11) | C23—O2—C26 | 116.28 (10) |
| C2—N1—C1 | 123.67 (11) | C15—N4—C14 | 123.68 (11) |
| C2—N1—H1N | 114.8 (11) | C15—N4—H4N | 114.8 (11) |
| C1—N1—H1N | 121.4 (11) | C14—N4—H4N | 121.5 (11) |
| C2—N2—N3 | 117.48 (11) | C15—N5—N6 | 117.04 (11) |
| C2—N2—H2N | 119.0 (11) | C15—N5—H5N | 119.8 (11) |
| N3—N2—H2N | 123.5 (11) | N6—N5—H5N | 122.7 (11) |
| C3—N3—N2 | 118.22 (11) | C16—N6—N5 | 118.43 (11) |
| N1—C1—H1A | 109.5 | N4—C14—H14A | 109.5 |
| N1—C1—H1B | 109.5 | N4—C14—H14B | 109.5 |
| H1A—C1—H1B | 109.5 | H14A—C14—H14B | 109.5 |
| N1—C1—H1C | 109.5 | N4—C14—H14C | 109.5 |
| H1A—C1—H1C | 109.5 | H14A—C14—H14C | 109.5 |
| H1B—C1—H1C | 109.5 | H14B—C14—H14C | 109.5 |
| N1—C2—N2 | 116.68 (11) | N4—C15—N5 | 116.10 (11) |
| N1—C2—S1 | 123.03 (10) | N4—C15—S2 | 123.13 (10) |
| N2—C2—S1 | 120.28 (10) | N5—C15—S2 | 120.77 (10) |
| N3—C3—C4 | 125.83 (12) | N6—C16—C17 | 125.70 (12) |
| N3—C3—C5 | 117.16 (11) | N6—C16—C18 | 117.21 (11) |
| C4—C3—C5 | 117.01 (11) | C17—C16—C18 | 117.07 (11) |
| C3—C4—H4A | 109.5 | C16—C17—H17A | 109.5 |
| C3—C4—H4B | 109.5 | C16—C17—H17B | 109.5 |
| H4A—C4—H4B | 109.5 | H17A—C17—H17B | 109.5 |
| C3—C4—H4C | 109.5 | C16—C17—H17C | 109.5 |
| H4A—C4—H4C | 109.5 | H17A—C17—H17C | 109.5 |
| H4B—C4—H4C | 109.5 | H17B—C17—H17C | 109.5 |
| C3—C5—C6 | 115.30 (11) | C16—C18—C19 | 115.25 (11) |
| C3—C5—H5A | 108.4 | C16—C18—H18A | 108.5 |
| C6—C5—H5A | 108.4 | C19—C18—H18A | 108.5 |
| C3—C5—H5B | 108.4 | C16—C18—H18B | 108.5 |
| C6—C5—H5B | 108.4 | C19—C18—H18B | 108.5 |
| H5A—C5—H5B | 107.5 | H18A—C18—H18B | 107.5 |
| C7—C6—C5 | 112.58 (11) | C20—C19—C18 | 112.97 (11) |
| C7—C6—H6A | 109.1 | C20—C19—H19A | 109.0 |
| C5—C6—H6A | 109.1 | C18—C19—H19A | 109.0 |
| C7—C6—H6B | 109.1 | C20—C19—H19B | 109.0 |
| C5—C6—H6B | 109.1 | C18—C19—H19B | 109.0 |
| H6A—C6—H6B | 107.8 | H19A—C19—H19B | 107.8 |
| C12—C7—C8 | 117.58 (12) | C21—C20—C25 | 117.58 (12) |
| C12—C7—C6 | 121.97 (12) | C21—C20—C19 | 121.45 (13) |
| C8—C7—C6 | 120.45 (12) | C25—C20—C19 | 120.97 (13) |
| C9—C8—C7 | 121.52 (12) | C20—C21—C22 | 122.09 (13) |
| C9—C8—H8 | 119.2 | C20—C21—H21 | 119.0 |
| C7—C8—H8 | 119.2 | C22—C21—H21 | 119.0 |
| C8—C9—C10 | 119.84 (12) | C23—C22—C21 | 119.25 (13) |
| C8—C9—H9 | 120.1 | C23—C22—H22 | 120.4 |
| C10—C9—H9 | 120.1 | C21—C22—H22 | 120.4 |
| O1—C10—C11 | 124.80 (12) | O2—C23—C22 | 124.70 (12) |
| O1—C10—C9 | 115.30 (12) | O2—C23—C24 | 115.59 (12) |
| C11—C10—C9 | 119.89 (12) | C22—C23—C24 | 119.69 (12) |
| C10—C11—C12 | 119.18 (13) | C25—C24—C23 | 120.07 (12) |
| C10—C11—H11 | 120.4 | C25—C24—H24 | 120.0 |
| C12—C11—H11 | 120.4 | C23—C24—H24 | 120.0 |
| C7—C12—C11 | 121.94 (13) | C24—C25—C20 | 121.28 (13) |
| C7—C12—H12 | 119.0 | C24—C25—H25 | 119.4 |
| C11—C12—H12 | 119.0 | C20—C25—H25 | 119.4 |
| O1—C13—H13A | 109.5 | O2—C26—H26A | 109.5 |
| O1—C13—H13B | 109.5 | O2—C26—H26B | 109.5 |
| H13A—C13—H13B | 109.5 | H26A—C26—H26B | 109.5 |
| O1—C13—H13C | 109.5 | O2—C26—H26C | 109.5 |
| H13A—C13—H13C | 109.5 | H26A—C26—H26C | 109.5 |
| H13B—C13—H13C | 109.5 | H26B—C26—H26C | 109.5 |
| C2—N2—N3—C3 | −174.61 (11) | C15—N5—N6—C16 | 178.41 (11) |
| C1—N1—C2—N2 | −176.85 (13) | C14—N4—C15—N5 | 177.38 (12) |
| C1—N1—C2—S1 | 1.81 (19) | C14—N4—C15—S2 | −2.45 (19) |
| N3—N2—C2—N1 | 4.06 (17) | N6—N5—C15—N4 | 6.56 (17) |
| N3—N2—C2—S1 | −174.64 (9) | N6—N5—C15—S2 | −173.61 (9) |
| N2—N3—C3—C4 | 1.38 (19) | N5—N6—C16—C17 | 1.1 (2) |
| N2—N3—C3—C5 | −178.93 (10) | N5—N6—C16—C18 | −177.38 (11) |
| N3—C3—C5—C6 | 5.04 (18) | N6—C16—C18—C19 | 3.64 (18) |
| C4—C3—C5—C6 | −175.24 (12) | C17—C16—C18—C19 | −174.98 (12) |
| C3—C5—C6—C7 | −175.80 (11) | C16—C18—C19—C20 | 177.51 (12) |
| C5—C6—C7—C12 | −102.04 (15) | C18—C19—C20—C21 | −93.64 (16) |
| C5—C6—C7—C8 | 78.03 (16) | C18—C19—C20—C25 | 87.00 (16) |
| C12—C7—C8—C9 | −1.6 (2) | C25—C20—C21—C22 | 2.1 (2) |
| C6—C7—C8—C9 | 178.36 (12) | C19—C20—C21—C22 | −177.31 (13) |
| C7—C8—C9—C10 | −0.1 (2) | C20—C21—C22—C23 | −0.7 (2) |
| C13—O1—C10—C11 | −3.41 (19) | C26—O2—C23—C22 | −5.62 (19) |
| C13—O1—C10—C9 | 175.41 (12) | C26—O2—C23—C24 | 172.95 (12) |
| C8—C9—C10—O1 | −177.48 (11) | C21—C22—C23—O2 | 177.50 (13) |
| C8—C9—C10—C11 | 1.4 (2) | C21—C22—C23—C24 | −1.0 (2) |
| O1—C10—C11—C12 | 177.71 (12) | O2—C23—C24—C25 | −177.41 (11) |
| C9—C10—C11—C12 | −1.1 (2) | C22—C23—C24—C25 | 1.2 (2) |
| C8—C7—C12—C11 | 1.9 (2) | C23—C24—C25—C20 | 0.2 (2) |
| C6—C7—C12—C11 | −178.01 (13) | C21—C20—C25—C24 | −1.8 (2) |
| C10—C11—C12—C7 | −0.6 (2) | C19—C20—C25—C24 | 177.55 (12) |
Hydrogen-bond geometry (Å, º)
Cg1 is the centroid of the C7–C12 ring.
| D—H···A | D—H | H···A | D···A | D—H···A |
| N1—H1n···N3 | 0.87 (1) | 2.15 (1) | 2.5931 (16) | 111 (1) |
| N4—H4n···N6 | 0.87 (1) | 2.13 (1) | 2.5818 (17) | 112 (1) |
| N2—H2n···S2 | 0.87 (1) | 2.70 (1) | 3.5686 (11) | 176 (1) |
| N5—H5n···S1 | 0.88 (1) | 2.65 (1) | 3.5276 (11) | 178 (1) |
| N1—H1n···O2i | 0.87 (1) | 2.51 (2) | 3.0979 (16) | 125 (1) |
| C1—H1B···Cg1ii | 0.98 | 2.94 | 3.5930 (17) | 125 |
Symmetry codes: (i) x+1, y−1, z+1; (ii) x−1, y, z.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: QM2063).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681201611X/qm2063sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681201611X/qm2063Isup2.hkl
Supplementary material file. DOI: 10.1107/S160053681201611X/qm2063Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report




