Abstract
In the title compound, C11H13NO4, the isoxazolidine ring has an envelope conformation with the O atom as the flap. In the crystal, molecules are liked via N—H⋯O and bifurcated O—H⋯(O,N) hydrogen bonds forming chains propagating along [010]. There are also C—H⋯O interactions present.
Related literature
For the use of isoxazolidine-containing compounds as building blocks in synthesis, see: Carrillo et al. (2006 ▶); Lv et al. (2010 ▶); Ibrahem et al. (2007 ▶); Sharma et al. (1999 ▶). For information on conjugation additions to α,β-unsaturated ketones, see: Wu et al. (2006 ▶). For standard bond-lengths see: Allen et al. (1987 ▶).
Experimental
Crystal data
C11H13NO4
M r = 223.22
Monoclinic,
a = 11.8322 (3) Å
b = 6.0853 (1) Å
c = 15.8570 (3) Å
β = 101.864 (2)°
V = 1117.35 (4) Å3
Z = 4
Cu Kα radiation
μ = 0.85 mm−1
T = 291 K
0.40 × 0.36 × 0.30 mm
Data collection
Oxford Gemini S Ultra diffractometer
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.726, T max = 0.784
10901 measured reflections
2165 independent reflections
1921 reflections with I > 2σ(I)
R int = 0.034
Refinement
R[F 2 > 2σ(F 2)] = 0.042
wR(F 2) = 0.097
S = 1.05
2165 reflections
151 parameters
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.20 e Å−3
Δρmin = −0.12 e Å−3
Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97.
Supplementary Material
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812017576/su2406sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812017576/su2406Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812017576/su2406Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N1—H4⋯O1i | 0.907 (18) | 2.315 (18) | 3.1158 (15) | 147.0 (13) |
| O2—H9⋯O1i | 0.82 | 2.51 | 3.0673 (13) | 127 |
| O2—H9⋯N1i | 0.82 | 1.99 | 2.7826 (16) | 162 |
| C11—H11A⋯O3ii | 0.96 | 2.54 | 3.480 (2) | 166 |
| C11—H11C⋯O2iii | 0.96 | 2.53 | 3.419 (2) | 154 |
Symmetry codes: (i)
; (ii)
; (iii)
.
Acknowledgments
The authors thank the Testing Centre of Sichuan University for the diffraction measurements and China West Normal University for suport.
supplementary crystallographic information
Comment
Isoxazolidines are interesting heterocyclic compounds that may be regarded as unusual constrained β-amino acids or as furanose mimetics, and have been exploited as analogues of natural products (Lv et al., 2010). Isoxazolidines are also applied in the synthesis of oligopeptides in the absence of coupling reagents (Carrillo et al., 2006) and used as building blocks in organic synthesis (Ibrahem et al., 2007; Sharma et al., 1999).
Nitrogen containing nucleophiles such as hydroxylamines and hydrazoic acid are widely employed in conjugation additions to α,β-unsaturated ketones (Wu et al., 2006). The title compound is a Michael addition product from the transformation of hydroxylamine to an α,β-unsaturated ketone ester. We report herein on the crystal structure of the title compound.
The molecular structure of the title molecule is shown in Fig. 1. The bond lengths (Allen et al., 1987) and angles are normal. The isoxazolidine ring possesses an envelope conformation with atom O1 as the flap.
In the crystal, molecules are linked via N—H···O and bifurcated O—H···O,N hydrogen bonds to form chains along the b axis (Table 1). These chains are linked via C-H···O interactions (Table 1).
Experimental
To the solution of (E)-methyl 2-oxo-4-phenylbut-3-enoate (0.019 g, 0.1 mmol) and hydroxylamine hydrochloride (0.07 g, 0.1 mmol) in dichloromethane (1 mL) was added triethylamine (0.012 g, 0.12mmol) at room temperature. The reaction mixture was stirred for 24 h at 273 K. The solvent was then removed under reduced pressure, and the residue was purified through column chromatography (petroleum ether: ethyl acetate = 3:1(V/V)). Single crystals, suitable for X-ray diffraction, were obtained by slow evaporation of an ethyl acetate solution at room temperature for 2 d.
Refinement
The NH H atom was located in a difference Fourier map and freely refined. The OH and C-bound H-atoms were included in calculated positions and treated as riding atoms: O-H = 0.82 Å, C-H = 0.93, 0.96, 0.97 and 0.98 Å for CH(aromatic), CH3, CH2 and CH(methine) H-atoms, respectively, with Uiso(H) = k × Ueq(O,C), where k = 1.5 for OH and CH3 H-atoms and = 1.2 for other H-atoms.
Figures
Fig. 1.
The molecular structure of the title molecule, with the atom numbering. Displacement ellipsoids are drawn at the 30% probability level.
Crystal data
| C11H13NO4 | F(000) = 472 |
| Mr = 223.22 | Dx = 1.327 Mg m−3 |
| Monoclinic, P21/n | Cu Kα radiation, λ = 1.54184 Å |
| Hall symbol: -P 2yn | Cell parameters from 7888 reflections |
| a = 11.8322 (3) Å | θ = 3.8–71.9° |
| b = 6.0853 (1) Å | µ = 0.85 mm−1 |
| c = 15.8570 (3) Å | T = 291 K |
| β = 101.864 (2)° | Block, colourless |
| V = 1117.35 (4) Å3 | 0.40 × 0.36 × 0.30 mm |
| Z = 4 |
Data collection
| Oxford Gemini S Ultra diffractometer | 2165 independent reflections |
| Radiation source: Enhance Ultra (Cu) X-ray Source | 1921 reflections with I > 2σ(I) |
| Mirror monochromator | Rint = 0.034 |
| Detector resolution: 15.9149 pixels mm-1 | θmax = 72.1°, θmin = 5.7° |
| ω scans | h = −14→13 |
| Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) | k = −6→7 |
| Tmin = 0.726, Tmax = 0.784 | l = −19→18 |
| 10901 measured reflections |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.042 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.097 | H atoms treated by a mixture of independent and constrained refinement |
| S = 1.05 | w = 1/[σ2(Fo2) + (0.0323P)2 + 0.2933P] where P = (Fo2 + 2Fc2)/3 |
| 2165 reflections | (Δ/σ)max < 0.001 |
| 151 parameters | Δρmax = 0.20 e Å−3 |
| 0 restraints | Δρmin = −0.12 e Å−3 |
Special details
| Experimental. Absorption correction: (CrysAlisPro; Oxford Diffraction, 2009) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. |
| Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| O1 | 0.79693 (8) | 0.06822 (15) | 0.78232 (6) | 0.0518 (3) | |
| O2 | 0.82481 (9) | −0.20986 (16) | 0.88556 (6) | 0.0604 (4) | |
| O3 | 1.04065 (10) | −0.0305 (2) | 0.89858 (10) | 0.0901 (5) | |
| O4 | 0.96722 (8) | 0.30583 (16) | 0.89779 (7) | 0.0641 (4) | |
| N1 | 0.67179 (10) | 0.0582 (2) | 0.76513 (8) | 0.0535 (4) | |
| C1 | 0.3265 (2) | −0.1664 (6) | 0.87113 (15) | 0.1076 (12) | |
| C2 | 0.4303 (2) | −0.2651 (4) | 0.90278 (16) | 0.1061 (10) | |
| C3 | 0.53265 (17) | −0.1617 (3) | 0.89530 (14) | 0.0857 (7) | |
| C4 | 0.53083 (13) | 0.0405 (3) | 0.85666 (10) | 0.0629 (5) | |
| C5 | 0.42474 (15) | 0.1361 (4) | 0.82446 (13) | 0.0843 (7) | |
| C6 | 0.32309 (17) | 0.0312 (5) | 0.83205 (16) | 0.1066 (10) | |
| C7 | 0.63963 (12) | 0.1531 (2) | 0.84333 (10) | 0.0577 (5) | |
| C8 | 0.74876 (13) | 0.1335 (3) | 0.91548 (10) | 0.0613 (5) | |
| C9 | 0.83371 (12) | 0.0138 (2) | 0.87205 (9) | 0.0522 (4) | |
| C10 | 0.96003 (12) | 0.0898 (2) | 0.89183 (9) | 0.0553 (5) | |
| C11 | 1.08082 (14) | 0.4029 (3) | 0.90958 (12) | 0.0719 (6) | |
| H1 | 0.25820 | −0.23540 | 0.87650 | 0.1290* | |
| H2 | 0.43250 | −0.40170 | 0.92940 | 0.1270* | |
| H3 | 0.60300 | −0.23020 | 0.91670 | 0.1030* | |
| H4 | 0.6564 (13) | −0.088 (3) | 0.7630 (10) | 0.062 (4)* | |
| H5 | 0.42140 | 0.27220 | 0.79740 | 0.1010* | |
| H6 | 0.25230 | 0.09750 | 0.81010 | 0.1280* | |
| H7 | 0.62260 | 0.30950 | 0.83270 | 0.0690* | |
| H8A | 0.77780 | 0.27740 | 0.93560 | 0.0740* | |
| H8B | 0.73310 | 0.04990 | 0.96390 | 0.0740* | |
| H9 | 0.84150 | −0.27740 | 0.84510 | 0.0900* | |
| H11A | 1.07520 | 0.55870 | 0.91730 | 0.1080* | |
| H11B | 1.11280 | 0.37440 | 0.85970 | 0.1080* | |
| H11C | 1.12990 | 0.34020 | 0.95950 | 0.1080* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O1 | 0.0502 (5) | 0.0495 (6) | 0.0538 (5) | −0.0012 (4) | 0.0064 (4) | 0.0012 (4) |
| O2 | 0.0731 (7) | 0.0478 (6) | 0.0577 (6) | −0.0060 (5) | 0.0076 (5) | 0.0027 (4) |
| O3 | 0.0607 (7) | 0.0555 (7) | 0.1493 (12) | 0.0081 (6) | 0.0105 (7) | −0.0051 (7) |
| O4 | 0.0539 (6) | 0.0465 (6) | 0.0867 (8) | −0.0031 (4) | 0.0023 (5) | 0.0018 (5) |
| N1 | 0.0496 (6) | 0.0472 (7) | 0.0608 (7) | −0.0018 (5) | 0.0049 (5) | −0.0032 (5) |
| C1 | 0.0765 (14) | 0.163 (3) | 0.0888 (15) | −0.0423 (16) | 0.0295 (11) | −0.0271 (16) |
| C2 | 0.1073 (18) | 0.1077 (18) | 0.1067 (16) | −0.0414 (14) | 0.0303 (13) | 0.0013 (13) |
| C3 | 0.0734 (11) | 0.0809 (13) | 0.1028 (14) | −0.0142 (10) | 0.0179 (10) | 0.0070 (11) |
| C4 | 0.0565 (8) | 0.0657 (10) | 0.0669 (9) | −0.0030 (7) | 0.0136 (7) | −0.0112 (8) |
| C5 | 0.0627 (10) | 0.0975 (14) | 0.0922 (13) | 0.0080 (10) | 0.0149 (9) | −0.0081 (11) |
| C6 | 0.0572 (11) | 0.153 (2) | 0.1111 (18) | −0.0031 (13) | 0.0211 (11) | −0.0198 (17) |
| C7 | 0.0593 (8) | 0.0481 (8) | 0.0653 (9) | 0.0006 (6) | 0.0120 (7) | −0.0059 (6) |
| C8 | 0.0593 (8) | 0.0635 (9) | 0.0605 (8) | −0.0063 (7) | 0.0110 (7) | −0.0115 (7) |
| C9 | 0.0564 (8) | 0.0463 (7) | 0.0511 (7) | −0.0023 (6) | 0.0046 (6) | −0.0007 (6) |
| C10 | 0.0566 (8) | 0.0474 (8) | 0.0588 (8) | 0.0015 (6) | 0.0044 (6) | 0.0008 (6) |
| C11 | 0.0593 (9) | 0.0615 (10) | 0.0893 (12) | −0.0118 (8) | 0.0026 (8) | 0.0030 (8) |
Geometric parameters (Å, º)
| O1—N1 | 1.4507 (16) | C5—C6 | 1.389 (3) |
| O1—C9 | 1.4384 (17) | C7—C8 | 1.544 (2) |
| O2—C9 | 1.3852 (16) | C8—C9 | 1.517 (2) |
| O3—C10 | 1.1897 (18) | C9—C10 | 1.534 (2) |
| O4—C10 | 1.3195 (16) | C1—H1 | 0.9300 |
| O4—C11 | 1.445 (2) | C2—H2 | 0.9300 |
| O2—H9 | 0.8200 | C3—H3 | 0.9300 |
| N1—C7 | 1.4866 (19) | C5—H5 | 0.9300 |
| N1—H4 | 0.907 (18) | C6—H6 | 0.9300 |
| C1—C2 | 1.367 (4) | C7—H7 | 0.9800 |
| C1—C6 | 1.350 (5) | C8—H8A | 0.9700 |
| C2—C3 | 1.391 (3) | C8—H8B | 0.9700 |
| C3—C4 | 1.373 (3) | C11—H11A | 0.9600 |
| C4—C7 | 1.511 (2) | C11—H11B | 0.9600 |
| C4—C5 | 1.383 (3) | C11—H11C | 0.9600 |
| N1—O1—C9 | 105.41 (10) | O4—C10—C9 | 111.15 (11) |
| C10—O4—C11 | 117.46 (12) | C2—C1—H1 | 120.00 |
| C9—O2—H9 | 109.00 | C6—C1—H1 | 120.00 |
| O1—N1—C7 | 104.68 (10) | C1—C2—H2 | 120.00 |
| C7—N1—H4 | 109.2 (10) | C3—C2—H2 | 120.00 |
| O1—N1—H4 | 103.7 (10) | C2—C3—H3 | 120.00 |
| C2—C1—C6 | 120.0 (2) | C4—C3—H3 | 120.00 |
| C1—C2—C3 | 120.2 (2) | C4—C5—H5 | 120.00 |
| C2—C3—C4 | 120.62 (19) | C6—C5—H5 | 120.00 |
| C3—C4—C5 | 118.15 (17) | C1—C6—H6 | 120.00 |
| C3—C4—C7 | 122.23 (15) | C5—C6—H6 | 120.00 |
| C5—C4—C7 | 119.50 (16) | N1—C7—H7 | 108.00 |
| C4—C5—C6 | 120.8 (2) | C4—C7—H7 | 108.00 |
| C1—C6—C5 | 120.3 (2) | C8—C7—H7 | 108.00 |
| C4—C7—C8 | 117.92 (13) | C7—C8—H8A | 111.00 |
| N1—C7—C8 | 105.64 (11) | C7—C8—H8B | 111.00 |
| N1—C7—C4 | 108.18 (12) | C9—C8—H8A | 111.00 |
| C7—C8—C9 | 103.42 (12) | C9—C8—H8B | 111.00 |
| O1—C9—O2 | 111.23 (10) | H8A—C8—H8B | 109.00 |
| O1—C9—C8 | 104.16 (11) | O4—C11—H11A | 109.00 |
| C8—C9—C10 | 118.11 (12) | O4—C11—H11B | 109.00 |
| O1—C9—C10 | 102.52 (11) | O4—C11—H11C | 109.00 |
| O2—C9—C8 | 108.85 (12) | H11A—C11—H11B | 109.00 |
| O2—C9—C10 | 111.50 (11) | H11A—C11—H11C | 109.00 |
| O3—C10—O4 | 124.61 (14) | H11B—C11—H11C | 109.00 |
| O3—C10—C9 | 124.22 (12) | ||
| C9—O1—N1—C7 | 38.90 (12) | C3—C4—C7—C8 | −38.7 (2) |
| N1—O1—C9—O2 | 76.12 (13) | C5—C4—C7—N1 | −94.88 (18) |
| N1—O1—C9—C8 | −40.98 (12) | C5—C4—C7—C8 | 145.43 (16) |
| N1—O1—C9—C10 | −164.61 (9) | C4—C5—C6—C1 | 0.0 (4) |
| C11—O4—C10—O3 | 2.8 (2) | N1—C7—C8—C9 | −3.24 (15) |
| C11—O4—C10—C9 | −175.29 (12) | C4—C7—C8—C9 | 117.76 (14) |
| O1—N1—C7—C4 | −148.04 (11) | C7—C8—C9—O1 | 26.43 (14) |
| O1—N1—C7—C8 | −20.90 (13) | C7—C8—C9—O2 | −92.30 (13) |
| C6—C1—C2—C3 | 0.4 (4) | C7—C8—C9—C10 | 139.28 (12) |
| C2—C1—C6—C5 | −0.6 (4) | O1—C9—C10—O3 | −103.08 (16) |
| C1—C2—C3—C4 | 0.4 (3) | O1—C9—C10—O4 | 75.06 (13) |
| C2—C3—C4—C5 | −1.0 (3) | O2—C9—C10—O3 | 16.0 (2) |
| C2—C3—C4—C7 | −176.90 (18) | O2—C9—C10—O4 | −165.86 (11) |
| C3—C4—C5—C6 | 0.8 (3) | C8—C9—C10—O3 | 143.17 (16) |
| C7—C4—C5—C6 | 176.83 (19) | C8—C9—C10—O4 | −38.69 (17) |
| C3—C4—C7—N1 | 81.02 (19) |
Hydrogen-bond geometry (Å, º)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N1—H4···O1i | 0.907 (18) | 2.315 (18) | 3.1158 (15) | 147.0 (13) |
| O2—H9···O1i | 0.82 | 2.51 | 3.0673 (13) | 127 |
| O2—H9···N1i | 0.82 | 1.99 | 2.7826 (16) | 162 |
| C11—H11A···O3ii | 0.96 | 2.54 | 3.480 (2) | 166 |
| C11—H11C···O2iii | 0.96 | 2.53 | 3.419 (2) | 154 |
Symmetry codes: (i) −x+3/2, y−1/2, −z+3/2; (ii) x, y+1, z; (iii) −x+2, −y, −z+2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: SU2406).
References
- Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19.
- Carrillo, N., Davalos, E. A., Russak, J. A. & Bode, J. W. (2006). J. Am. Chem. Soc. 128, 1452–1453. [DOI] [PubMed]
- Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.
- Ibrahem, I., Rios, R., Vesely, J., Zhao, G. L. & Cordova, A. (2007). Chem. Commun. 8, 849–851. [DOI] [PubMed]
- Lv, J., Li, X., Zhong, L., Luo, S. & Cheng, J. P. (2010). Org. Lett. 12, 1096–1099. [DOI] [PubMed]
- Oxford Diffraction (2009). CrysAlis PRO Oxford Diffraction Ltd, Yarnton, England.
- Sharma, G. V. M., Reddy, I. S., Reddy, V. G. & Rao, A. V. R. (1999). Tetrahedron Asymmetry, 10, 229–235.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Wu, Y. C., Liu, L., Li, H. J., Wang, D. & Chen, Y. J. (2006). J. Org. Chem. 71, 6592–6595. [DOI] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812017576/su2406sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812017576/su2406Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812017576/su2406Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report

