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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Apr 25;68(Pt 5):o1537. doi: 10.1107/S1600536812017576

Methyl 5-hy­droxy-3-phenyl-1,2-oxazolidine-5-carboxyl­ate

Jia Ye a,*, Ya-Nan Liu a, Yu Cheng a
PMCID: PMC3344639  PMID: 22590401

Abstract

In the title compound, C11H13NO4, the isoxazolidine ring has an envelope conformation with the O atom as the flap. In the crystal, mol­ecules are liked via N—H⋯O and bifurcated O—H⋯(O,N) hydrogen bonds forming chains propagating along [010]. There are also C—H⋯O inter­actions present.

Related literature  

For the use of isoxazolidine-containing compounds as building blocks in synthesis, see: Carrillo et al. (2006); Lv et al. (2010); Ibrahem et al. (2007); Sharma et al. (1999). For information on conjugation additions to α,β-unsaturated ketones, see: Wu et al. (2006). For standard bond-lengths see: Allen et al. (1987).graphic file with name e-68-o1537-scheme1.jpg

Experimental  

Crystal data  

  • C11H13NO4

  • M r = 223.22

  • Monoclinic, Inline graphic

  • a = 11.8322 (3) Å

  • b = 6.0853 (1) Å

  • c = 15.8570 (3) Å

  • β = 101.864 (2)°

  • V = 1117.35 (4) Å3

  • Z = 4

  • Cu Kα radiation

  • μ = 0.85 mm−1

  • T = 291 K

  • 0.40 × 0.36 × 0.30 mm

Data collection  

  • Oxford Gemini S Ultra diffractometer

  • Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) T min = 0.726, T max = 0.784

  • 10901 measured reflections

  • 2165 independent reflections

  • 1921 reflections with I > 2σ(I)

  • R int = 0.034

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.042

  • wR(F 2) = 0.097

  • S = 1.05

  • 2165 reflections

  • 151 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.20 e Å−3

  • Δρmin = −0.12 e Å−3

Data collection: CrysAlis PRO (Oxford Diffraction, 2009); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812017576/su2406sup1.cif

e-68-o1537-sup1.cif (17KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812017576/su2406Isup2.hkl

e-68-o1537-Isup2.hkl (104.3KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812017576/su2406Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H4⋯O1i 0.907 (18) 2.315 (18) 3.1158 (15) 147.0 (13)
O2—H9⋯O1i 0.82 2.51 3.0673 (13) 127
O2—H9⋯N1i 0.82 1.99 2.7826 (16) 162
C11—H11A⋯O3ii 0.96 2.54 3.480 (2) 166
C11—H11C⋯O2iii 0.96 2.53 3.419 (2) 154

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

The authors thank the Testing Centre of Sichuan University for the diffraction measurements and China West Normal University for suport.

supplementary crystallographic information

Comment

Isoxazolidines are interesting heterocyclic compounds that may be regarded as unusual constrained β-amino acids or as furanose mimetics, and have been exploited as analogues of natural products (Lv et al., 2010). Isoxazolidines are also applied in the synthesis of oligopeptides in the absence of coupling reagents (Carrillo et al., 2006) and used as building blocks in organic synthesis (Ibrahem et al., 2007; Sharma et al., 1999).

Nitrogen containing nucleophiles such as hydroxylamines and hydrazoic acid are widely employed in conjugation additions to α,β-unsaturated ketones (Wu et al., 2006). The title compound is a Michael addition product from the transformation of hydroxylamine to an α,β-unsaturated ketone ester. We report herein on the crystal structure of the title compound.

The molecular structure of the title molecule is shown in Fig. 1. The bond lengths (Allen et al., 1987) and angles are normal. The isoxazolidine ring possesses an envelope conformation with atom O1 as the flap.

In the crystal, molecules are linked via N—H···O and bifurcated O—H···O,N hydrogen bonds to form chains along the b axis (Table 1). These chains are linked via C-H···O interactions (Table 1).

Experimental

To the solution of (E)-methyl 2-oxo-4-phenylbut-3-enoate (0.019 g, 0.1 mmol) and hydroxylamine hydrochloride (0.07 g, 0.1 mmol) in dichloromethane (1 mL) was added triethylamine (0.012 g, 0.12mmol) at room temperature. The reaction mixture was stirred for 24 h at 273 K. The solvent was then removed under reduced pressure, and the residue was purified through column chromatography (petroleum ether: ethyl acetate = 3:1(V/V)). Single crystals, suitable for X-ray diffraction, were obtained by slow evaporation of an ethyl acetate solution at room temperature for 2 d.

Refinement

The NH H atom was located in a difference Fourier map and freely refined. The OH and C-bound H-atoms were included in calculated positions and treated as riding atoms: O-H = 0.82 Å, C-H = 0.93, 0.96, 0.97 and 0.98 Å for CH(aromatic), CH3, CH2 and CH(methine) H-atoms, respectively, with Uiso(H) = k × Ueq(O,C), where k = 1.5 for OH and CH3 H-atoms and = 1.2 for other H-atoms.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title molecule, with the atom numbering. Displacement ellipsoids are drawn at the 30% probability level.

Crystal data

C11H13NO4 F(000) = 472
Mr = 223.22 Dx = 1.327 Mg m3
Monoclinic, P21/n Cu Kα radiation, λ = 1.54184 Å
Hall symbol: -P 2yn Cell parameters from 7888 reflections
a = 11.8322 (3) Å θ = 3.8–71.9°
b = 6.0853 (1) Å µ = 0.85 mm1
c = 15.8570 (3) Å T = 291 K
β = 101.864 (2)° Block, colourless
V = 1117.35 (4) Å3 0.40 × 0.36 × 0.30 mm
Z = 4

Data collection

Oxford Gemini S Ultra diffractometer 2165 independent reflections
Radiation source: Enhance Ultra (Cu) X-ray Source 1921 reflections with I > 2σ(I)
Mirror monochromator Rint = 0.034
Detector resolution: 15.9149 pixels mm-1 θmax = 72.1°, θmin = 5.7°
ω scans h = −14→13
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) k = −6→7
Tmin = 0.726, Tmax = 0.784 l = −19→18
10901 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.097 H atoms treated by a mixture of independent and constrained refinement
S = 1.05 w = 1/[σ2(Fo2) + (0.0323P)2 + 0.2933P] where P = (Fo2 + 2Fc2)/3
2165 reflections (Δ/σ)max < 0.001
151 parameters Δρmax = 0.20 e Å3
0 restraints Δρmin = −0.12 e Å3

Special details

Experimental. Absorption correction: (CrysAlisPro; Oxford Diffraction, 2009) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.79693 (8) 0.06822 (15) 0.78232 (6) 0.0518 (3)
O2 0.82481 (9) −0.20986 (16) 0.88556 (6) 0.0604 (4)
O3 1.04065 (10) −0.0305 (2) 0.89858 (10) 0.0901 (5)
O4 0.96722 (8) 0.30583 (16) 0.89779 (7) 0.0641 (4)
N1 0.67179 (10) 0.0582 (2) 0.76513 (8) 0.0535 (4)
C1 0.3265 (2) −0.1664 (6) 0.87113 (15) 0.1076 (12)
C2 0.4303 (2) −0.2651 (4) 0.90278 (16) 0.1061 (10)
C3 0.53265 (17) −0.1617 (3) 0.89530 (14) 0.0857 (7)
C4 0.53083 (13) 0.0405 (3) 0.85666 (10) 0.0629 (5)
C5 0.42474 (15) 0.1361 (4) 0.82446 (13) 0.0843 (7)
C6 0.32309 (17) 0.0312 (5) 0.83205 (16) 0.1066 (10)
C7 0.63963 (12) 0.1531 (2) 0.84333 (10) 0.0577 (5)
C8 0.74876 (13) 0.1335 (3) 0.91548 (10) 0.0613 (5)
C9 0.83371 (12) 0.0138 (2) 0.87205 (9) 0.0522 (4)
C10 0.96003 (12) 0.0898 (2) 0.89183 (9) 0.0553 (5)
C11 1.08082 (14) 0.4029 (3) 0.90958 (12) 0.0719 (6)
H1 0.25820 −0.23540 0.87650 0.1290*
H2 0.43250 −0.40170 0.92940 0.1270*
H3 0.60300 −0.23020 0.91670 0.1030*
H4 0.6564 (13) −0.088 (3) 0.7630 (10) 0.062 (4)*
H5 0.42140 0.27220 0.79740 0.1010*
H6 0.25230 0.09750 0.81010 0.1280*
H7 0.62260 0.30950 0.83270 0.0690*
H8A 0.77780 0.27740 0.93560 0.0740*
H8B 0.73310 0.04990 0.96390 0.0740*
H9 0.84150 −0.27740 0.84510 0.0900*
H11A 1.07520 0.55870 0.91730 0.1080*
H11B 1.11280 0.37440 0.85970 0.1080*
H11C 1.12990 0.34020 0.95950 0.1080*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0502 (5) 0.0495 (6) 0.0538 (5) −0.0012 (4) 0.0064 (4) 0.0012 (4)
O2 0.0731 (7) 0.0478 (6) 0.0577 (6) −0.0060 (5) 0.0076 (5) 0.0027 (4)
O3 0.0607 (7) 0.0555 (7) 0.1493 (12) 0.0081 (6) 0.0105 (7) −0.0051 (7)
O4 0.0539 (6) 0.0465 (6) 0.0867 (8) −0.0031 (4) 0.0023 (5) 0.0018 (5)
N1 0.0496 (6) 0.0472 (7) 0.0608 (7) −0.0018 (5) 0.0049 (5) −0.0032 (5)
C1 0.0765 (14) 0.163 (3) 0.0888 (15) −0.0423 (16) 0.0295 (11) −0.0271 (16)
C2 0.1073 (18) 0.1077 (18) 0.1067 (16) −0.0414 (14) 0.0303 (13) 0.0013 (13)
C3 0.0734 (11) 0.0809 (13) 0.1028 (14) −0.0142 (10) 0.0179 (10) 0.0070 (11)
C4 0.0565 (8) 0.0657 (10) 0.0669 (9) −0.0030 (7) 0.0136 (7) −0.0112 (8)
C5 0.0627 (10) 0.0975 (14) 0.0922 (13) 0.0080 (10) 0.0149 (9) −0.0081 (11)
C6 0.0572 (11) 0.153 (2) 0.1111 (18) −0.0031 (13) 0.0211 (11) −0.0198 (17)
C7 0.0593 (8) 0.0481 (8) 0.0653 (9) 0.0006 (6) 0.0120 (7) −0.0059 (6)
C8 0.0593 (8) 0.0635 (9) 0.0605 (8) −0.0063 (7) 0.0110 (7) −0.0115 (7)
C9 0.0564 (8) 0.0463 (7) 0.0511 (7) −0.0023 (6) 0.0046 (6) −0.0007 (6)
C10 0.0566 (8) 0.0474 (8) 0.0588 (8) 0.0015 (6) 0.0044 (6) 0.0008 (6)
C11 0.0593 (9) 0.0615 (10) 0.0893 (12) −0.0118 (8) 0.0026 (8) 0.0030 (8)

Geometric parameters (Å, º)

O1—N1 1.4507 (16) C5—C6 1.389 (3)
O1—C9 1.4384 (17) C7—C8 1.544 (2)
O2—C9 1.3852 (16) C8—C9 1.517 (2)
O3—C10 1.1897 (18) C9—C10 1.534 (2)
O4—C10 1.3195 (16) C1—H1 0.9300
O4—C11 1.445 (2) C2—H2 0.9300
O2—H9 0.8200 C3—H3 0.9300
N1—C7 1.4866 (19) C5—H5 0.9300
N1—H4 0.907 (18) C6—H6 0.9300
C1—C2 1.367 (4) C7—H7 0.9800
C1—C6 1.350 (5) C8—H8A 0.9700
C2—C3 1.391 (3) C8—H8B 0.9700
C3—C4 1.373 (3) C11—H11A 0.9600
C4—C7 1.511 (2) C11—H11B 0.9600
C4—C5 1.383 (3) C11—H11C 0.9600
N1—O1—C9 105.41 (10) O4—C10—C9 111.15 (11)
C10—O4—C11 117.46 (12) C2—C1—H1 120.00
C9—O2—H9 109.00 C6—C1—H1 120.00
O1—N1—C7 104.68 (10) C1—C2—H2 120.00
C7—N1—H4 109.2 (10) C3—C2—H2 120.00
O1—N1—H4 103.7 (10) C2—C3—H3 120.00
C2—C1—C6 120.0 (2) C4—C3—H3 120.00
C1—C2—C3 120.2 (2) C4—C5—H5 120.00
C2—C3—C4 120.62 (19) C6—C5—H5 120.00
C3—C4—C5 118.15 (17) C1—C6—H6 120.00
C3—C4—C7 122.23 (15) C5—C6—H6 120.00
C5—C4—C7 119.50 (16) N1—C7—H7 108.00
C4—C5—C6 120.8 (2) C4—C7—H7 108.00
C1—C6—C5 120.3 (2) C8—C7—H7 108.00
C4—C7—C8 117.92 (13) C7—C8—H8A 111.00
N1—C7—C8 105.64 (11) C7—C8—H8B 111.00
N1—C7—C4 108.18 (12) C9—C8—H8A 111.00
C7—C8—C9 103.42 (12) C9—C8—H8B 111.00
O1—C9—O2 111.23 (10) H8A—C8—H8B 109.00
O1—C9—C8 104.16 (11) O4—C11—H11A 109.00
C8—C9—C10 118.11 (12) O4—C11—H11B 109.00
O1—C9—C10 102.52 (11) O4—C11—H11C 109.00
O2—C9—C8 108.85 (12) H11A—C11—H11B 109.00
O2—C9—C10 111.50 (11) H11A—C11—H11C 109.00
O3—C10—O4 124.61 (14) H11B—C11—H11C 109.00
O3—C10—C9 124.22 (12)
C9—O1—N1—C7 38.90 (12) C3—C4—C7—C8 −38.7 (2)
N1—O1—C9—O2 76.12 (13) C5—C4—C7—N1 −94.88 (18)
N1—O1—C9—C8 −40.98 (12) C5—C4—C7—C8 145.43 (16)
N1—O1—C9—C10 −164.61 (9) C4—C5—C6—C1 0.0 (4)
C11—O4—C10—O3 2.8 (2) N1—C7—C8—C9 −3.24 (15)
C11—O4—C10—C9 −175.29 (12) C4—C7—C8—C9 117.76 (14)
O1—N1—C7—C4 −148.04 (11) C7—C8—C9—O1 26.43 (14)
O1—N1—C7—C8 −20.90 (13) C7—C8—C9—O2 −92.30 (13)
C6—C1—C2—C3 0.4 (4) C7—C8—C9—C10 139.28 (12)
C2—C1—C6—C5 −0.6 (4) O1—C9—C10—O3 −103.08 (16)
C1—C2—C3—C4 0.4 (3) O1—C9—C10—O4 75.06 (13)
C2—C3—C4—C5 −1.0 (3) O2—C9—C10—O3 16.0 (2)
C2—C3—C4—C7 −176.90 (18) O2—C9—C10—O4 −165.86 (11)
C3—C4—C5—C6 0.8 (3) C8—C9—C10—O3 143.17 (16)
C7—C4—C5—C6 176.83 (19) C8—C9—C10—O4 −38.69 (17)
C3—C4—C7—N1 81.02 (19)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
N1—H4···O1i 0.907 (18) 2.315 (18) 3.1158 (15) 147.0 (13)
O2—H9···O1i 0.82 2.51 3.0673 (13) 127
O2—H9···N1i 0.82 1.99 2.7826 (16) 162
C11—H11A···O3ii 0.96 2.54 3.480 (2) 166
C11—H11C···O2iii 0.96 2.53 3.419 (2) 154

Symmetry codes: (i) −x+3/2, y−1/2, −z+3/2; (ii) x, y+1, z; (iii) −x+2, −y, −z+2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: SU2406).

References

  1. Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19.
  2. Carrillo, N., Davalos, E. A., Russak, J. A. & Bode, J. W. (2006). J. Am. Chem. Soc. 128, 1452–1453. [DOI] [PubMed]
  3. Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.
  4. Ibrahem, I., Rios, R., Vesely, J., Zhao, G. L. & Cordova, A. (2007). Chem. Commun. 8, 849–851. [DOI] [PubMed]
  5. Lv, J., Li, X., Zhong, L., Luo, S. & Cheng, J. P. (2010). Org. Lett. 12, 1096–1099. [DOI] [PubMed]
  6. Oxford Diffraction (2009). CrysAlis PRO Oxford Diffraction Ltd, Yarnton, England.
  7. Sharma, G. V. M., Reddy, I. S., Reddy, V. G. & Rao, A. V. R. (1999). Tetrahedron Asymmetry, 10, 229–235.
  8. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  9. Wu, Y. C., Liu, L., Li, H. J., Wang, D. & Chen, Y. J. (2006). J. Org. Chem. 71, 6592–6595. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812017576/su2406sup1.cif

e-68-o1537-sup1.cif (17KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812017576/su2406Isup2.hkl

e-68-o1537-Isup2.hkl (104.3KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812017576/su2406Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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