Abstract
In the title compound, C9H9N3O3S, the benzene ring and the N-carbamothioylacetamide unit are oriented at a dihedral angle of 54.82 (4)°. The dihedral angle between the ring and its attached nitro group is 28.54 (12)°. An intramolecular, bifurcated N—H⋯(O,O) hydrogen bond generates two S(6) rings. In the crystal, inversion dimers linked by pairs of N—H⋯S hydrogen bonds generate R 2 2(8) loops. Weak C—H⋯O interactions link the dimers.
Related literature
For related structures, see: Shahwar et al. (2012a ▶,b
▶,c
▶). For graph–set notation, see: Bernstein et al. (1995 ▶).
Experimental
Crystal data
C9H9N3O3S
M r = 239.25
Monoclinic,
a = 4.1992 (1) Å
b = 11.6081 (3) Å
c = 22.1035 (6) Å
β = 94.815 (1)°
V = 1073.63 (5) Å3
Z = 4
Mo Kα radiation
μ = 0.30 mm−1
T = 296 K
0.35 × 0.15 × 0.13 mm
Data collection
Bruker Kappa APEXII CCD diffractometer
Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.945, T max = 0.965
10065 measured reflections
2711 independent reflections
1969 reflections with I > 2σ(I)
R int = 0.029
Refinement
R[F 2 > 2σ(F 2)] = 0.039
wR(F 2) = 0.105
S = 1.01
2711 reflections
146 parameters
H-atom parameters constrained
Δρmax = 0.22 e Å−3
Δρmin = −0.22 e Å−3
Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON.
Supplementary Material
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812016947/hb6744sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812016947/hb6744Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812016947/hb6744Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N2—H2⋯O1 | 0.86 | 2.23 | 2.661 (2) | 111 |
| N2—H2⋯O3 | 0.86 | 1.93 | 2.630 (2) | 137 |
| N3—H3A⋯S1i | 0.86 | 2.59 | 3.4371 (14) | 168 |
| C9—H9C⋯O2ii | 0.96 | 2.51 | 3.428 (3) | 161 |
Symmetry codes: (i)
; (ii)
.
Acknowledgments
The authors acknowledge the provision of funds for the purchase of a diffractometer and encouragement by Dr Muhammad Akram Chaudhary, Vice Chancellor, University of Sargodha, Pakistan. The authors also acknowledge the technical support provided by Syed Muhammad Hussain Rizvi of Bana International, Karachi, Pakistan.
supplementary crystallographic information
Comment
The title compound I (Fig. 1) is in continuation to synthesize different derivatives of N-carbamothioylacetamide.
We have reported the crystal structures of N-(2-methylphenylcarbamothioyl)acetamide (Shahwar et al., 2012a), N-(3-chlorophenylcarbamothioyl)acetamide (Shahwar et al., 2012b) and N-(phenylcarbamothioyl)acetamide (Shahwar et al., 2012c) which are related to the (I).
In (I), the phenyl ring A (C1–C6) and the N-carbamothioylacetamide moiety B (N2/C7/S1/N3/C8/O3/C9) are planar with r. m. s. deviation of 0.0028 Å and 0.0181 Å, respectively. The dihedral angle between A/B is 54.82 (4)°. The nitro group C (O1/N1/O2) is of course planar. The dihedral angle between A/C and B/C are 28.68 (18) and 66.59 (12)°, respectively. There exist intramolecular H–bonding of N—H···O type (Table 1, Fig. 1) with two S(6) ring motifs (Bernstein et al., 1995). The molecules are dimerized due to N—H···S type of hydrogen bonds with R22(8) ring motifs (Table 1, Fig. 2). The dimers are interlinked from CH3 groups due to C—H···O H–bondings (Table 1, Fig. 2) with nitro groups.
Experimental
Acetylchloride (0.1 mol, 7.13 ml) was added dropwise to a stirred solution of KSCN (0.11 mol) in dry acetone (50 ml), followed by slow addition of 2-nitroaniline (0.1 mol) in dry acetone (25 ml). The mixture was refluxed for 5–10 min, then poured on ice cooled water, which resulted in crude precipitate. Recrystallization of the precipitate from ethylacetate yielded colourless needles.
Refinement
The H-atoms were positioned geometrically (C—H = 0.93–0.96 Å, N—H = 0.86 Å) and refined as riding with Uiso(H) = xUeq(C, N), where x = 1.5 for methyl groups and x = 1.2 for other H atoms.
Figures
Fig. 1.
View of the title compound with displacement ellipsoids drawn at the 50% probability level. The dotted lines represent the intra-molecular H-bondings.
Fig. 2.
Partial packing diagram showing inversion dimers linked by pairs of N—H···S hydrogen bonds with R22(8) ring motifs.
Crystal data
| C9H9N3O3S | F(000) = 496 |
| Mr = 239.25 | Dx = 1.480 Mg m−3 |
| Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2yn | Cell parameters from 1969 reflections |
| a = 4.1992 (1) Å | θ = 1.9–28.4° |
| b = 11.6081 (3) Å | µ = 0.30 mm−1 |
| c = 22.1035 (6) Å | T = 296 K |
| β = 94.815 (1)° | Needle, colourless |
| V = 1073.63 (5) Å3 | 0.35 × 0.15 × 0.13 mm |
| Z = 4 |
Data collection
| Bruker Kappa APEXII CCD diffractometer | 2711 independent reflections |
| Radiation source: fine-focus sealed tube | 1969 reflections with I > 2σ(I) |
| Graphite monochromator | Rint = 0.029 |
| Detector resolution: 7.50 pixels mm-1 | θmax = 28.4°, θmin = 1.9° |
| ω scans | h = −5→5 |
| Absorption correction: multi-scan (SADABS; Bruker, 2005) | k = −15→15 |
| Tmin = 0.945, Tmax = 0.965 | l = −29→29 |
| 10065 measured reflections |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.039 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.105 | H-atom parameters constrained |
| S = 1.01 | w = 1/[σ2(Fo2) + (0.0428P)2 + 0.3324P] where P = (Fo2 + 2Fc2)/3 |
| 2711 reflections | (Δ/σ)max < 0.001 |
| 146 parameters | Δρmax = 0.22 e Å−3 |
| 0 restraints | Δρmin = −0.22 e Å−3 |
Special details
| Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| S1 | 1.09141 (12) | 0.18209 (4) | 0.01646 (2) | 0.0470 (2) | |
| O1 | 1.0422 (5) | 0.23102 (15) | 0.24000 (7) | 0.0772 (7) | |
| O2 | 1.4312 (4) | 0.3495 (2) | 0.25974 (8) | 0.1053 (8) | |
| O3 | 0.5502 (4) | 0.04876 (12) | 0.17207 (6) | 0.0676 (5) | |
| N1 | 1.1962 (4) | 0.31649 (18) | 0.22843 (7) | 0.0608 (6) | |
| N2 | 0.8449 (4) | 0.22014 (12) | 0.12253 (6) | 0.0441 (5) | |
| N3 | 0.7962 (3) | 0.03702 (12) | 0.08415 (6) | 0.0405 (4) | |
| C1 | 0.9181 (4) | 0.33887 (14) | 0.12522 (7) | 0.0402 (5) | |
| C2 | 1.0856 (4) | 0.38734 (16) | 0.17587 (8) | 0.0465 (6) | |
| C3 | 1.1536 (5) | 0.50364 (19) | 0.17923 (11) | 0.0654 (8) | |
| C4 | 1.0529 (6) | 0.57302 (19) | 0.13141 (12) | 0.0763 (9) | |
| C5 | 0.8855 (6) | 0.52747 (18) | 0.08093 (11) | 0.0678 (8) | |
| C6 | 0.8168 (5) | 0.41127 (16) | 0.07781 (9) | 0.0537 (7) | |
| C7 | 0.9000 (4) | 0.14835 (14) | 0.07749 (7) | 0.0369 (5) | |
| C8 | 0.6239 (4) | −0.00808 (16) | 0.12923 (8) | 0.0449 (6) | |
| C9 | 0.5378 (5) | −0.13221 (17) | 0.12095 (8) | 0.0522 (6) | |
| H2 | 0.75624 | 0.19142 | 0.15281 | 0.0529* | |
| H3 | 1.26623 | 0.53434 | 0.21351 | 0.0785* | |
| H3A | 0.84485 | −0.01078 | 0.05666 | 0.0485* | |
| H4 | 1.09789 | 0.65145 | 0.13307 | 0.0915* | |
| H5 | 0.81794 | 0.57530 | 0.04862 | 0.0814* | |
| H6 | 0.70161 | 0.38146 | 0.04358 | 0.0645* | |
| H9A | 0.72667 | −0.17858 | 0.12780 | 0.0784* | |
| H9B | 0.44403 | −0.14442 | 0.08033 | 0.0784* | |
| H9C | 0.38729 | −0.15343 | 0.14937 | 0.0784* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| S1 | 0.0619 (3) | 0.0391 (2) | 0.0416 (3) | −0.0060 (2) | 0.0135 (2) | −0.0040 (2) |
| O1 | 0.1231 (15) | 0.0614 (10) | 0.0455 (9) | 0.0175 (10) | −0.0028 (9) | 0.0020 (7) |
| O2 | 0.0672 (11) | 0.177 (2) | 0.0673 (11) | 0.0072 (12) | −0.0204 (9) | −0.0075 (12) |
| O3 | 0.0970 (11) | 0.0569 (9) | 0.0533 (8) | −0.0117 (8) | 0.0325 (8) | −0.0063 (7) |
| N1 | 0.0646 (11) | 0.0792 (13) | 0.0381 (9) | 0.0208 (10) | 0.0014 (8) | −0.0132 (9) |
| N2 | 0.0628 (9) | 0.0352 (7) | 0.0350 (8) | 0.0011 (7) | 0.0087 (7) | −0.0019 (6) |
| N3 | 0.0512 (8) | 0.0335 (7) | 0.0371 (7) | 0.0002 (6) | 0.0064 (6) | −0.0022 (6) |
| C1 | 0.0491 (10) | 0.0345 (9) | 0.0375 (9) | 0.0039 (7) | 0.0063 (7) | −0.0051 (7) |
| C2 | 0.0500 (10) | 0.0498 (10) | 0.0401 (9) | 0.0066 (8) | 0.0066 (8) | −0.0085 (8) |
| C3 | 0.0704 (14) | 0.0558 (13) | 0.0700 (14) | −0.0081 (11) | 0.0060 (11) | −0.0250 (11) |
| C4 | 0.0957 (18) | 0.0385 (11) | 0.0970 (19) | −0.0106 (11) | 0.0224 (15) | −0.0133 (12) |
| C5 | 0.0949 (17) | 0.0420 (11) | 0.0676 (14) | 0.0081 (11) | 0.0134 (13) | 0.0081 (10) |
| C6 | 0.0704 (13) | 0.0411 (10) | 0.0488 (11) | 0.0069 (9) | −0.0004 (9) | −0.0004 (8) |
| C7 | 0.0411 (9) | 0.0341 (8) | 0.0345 (8) | 0.0033 (7) | −0.0026 (7) | −0.0017 (6) |
| C8 | 0.0503 (10) | 0.0454 (10) | 0.0390 (9) | −0.0017 (8) | 0.0033 (8) | 0.0036 (8) |
| C9 | 0.0594 (12) | 0.0500 (11) | 0.0470 (10) | −0.0126 (9) | 0.0031 (9) | 0.0041 (8) |
Geometric parameters (Å, º)
| S1—C7 | 1.6737 (17) | C2—C3 | 1.381 (3) |
| O1—N1 | 1.223 (3) | C3—C4 | 1.367 (3) |
| O2—N1 | 1.219 (2) | C4—C5 | 1.374 (4) |
| O3—C8 | 1.215 (2) | C5—C6 | 1.380 (3) |
| N1—C2 | 1.467 (2) | C8—C9 | 1.493 (3) |
| N2—C1 | 1.412 (2) | C3—H3 | 0.9300 |
| N2—C7 | 1.333 (2) | C4—H4 | 0.9300 |
| N3—C7 | 1.376 (2) | C5—H5 | 0.9300 |
| N3—C8 | 1.383 (2) | C6—H6 | 0.9300 |
| N2—H2 | 0.8600 | C9—H9A | 0.9600 |
| N3—H3A | 0.8600 | C9—H9B | 0.9600 |
| C1—C6 | 1.382 (3) | C9—H9C | 0.9600 |
| C1—C2 | 1.390 (2) | ||
| O1—N1—O2 | 123.61 (19) | S1—C7—N3 | 118.95 (12) |
| O1—N1—C2 | 118.86 (16) | N2—C7—N3 | 115.52 (14) |
| O2—N1—C2 | 117.45 (19) | O3—C8—C9 | 123.00 (17) |
| C1—N2—C7 | 126.20 (14) | N3—C8—C9 | 114.40 (15) |
| C7—N3—C8 | 128.50 (14) | O3—C8—N3 | 122.61 (17) |
| C1—N2—H2 | 117.00 | C2—C3—H3 | 120.00 |
| C7—N2—H2 | 117.00 | C4—C3—H3 | 120.00 |
| C7—N3—H3A | 116.00 | C3—C4—H4 | 120.00 |
| C8—N3—H3A | 116.00 | C5—C4—H4 | 120.00 |
| N2—C1—C2 | 121.50 (15) | C4—C5—H5 | 120.00 |
| N2—C1—C6 | 120.62 (15) | C6—C5—H5 | 120.00 |
| C2—C1—C6 | 117.85 (16) | C1—C6—H6 | 120.00 |
| C1—C2—C3 | 121.84 (18) | C5—C6—H6 | 120.00 |
| N1—C2—C1 | 121.07 (16) | C8—C9—H9A | 109.00 |
| N1—C2—C3 | 117.09 (17) | C8—C9—H9B | 109.00 |
| C2—C3—C4 | 119.0 (2) | C8—C9—H9C | 109.00 |
| C3—C4—C5 | 120.3 (2) | H9A—C9—H9B | 109.00 |
| C4—C5—C6 | 120.5 (2) | H9A—C9—H9C | 109.00 |
| C1—C6—C5 | 120.45 (19) | H9B—C9—H9C | 109.00 |
| S1—C7—N2 | 125.50 (13) | ||
| O1—N1—C2—C3 | 149.7 (2) | C6—C1—C2—N1 | 178.95 (17) |
| O1—N1—C2—C1 | −30.0 (3) | C6—C1—C2—C3 | −0.7 (3) |
| O2—N1—C2—C1 | 153.06 (19) | N2—C1—C6—C5 | 179.21 (19) |
| O2—N1—C2—C3 | −27.3 (3) | C2—C1—C6—C5 | 0.9 (3) |
| C7—N2—C1—C2 | −129.53 (19) | N2—C1—C2—N1 | 0.7 (3) |
| C7—N2—C1—C6 | 52.2 (3) | N2—C1—C2—C3 | −178.95 (17) |
| C1—N2—C7—S1 | 4.5 (3) | N1—C2—C3—C4 | −179.54 (19) |
| C1—N2—C7—N3 | −177.62 (15) | C1—C2—C3—C4 | 0.1 (3) |
| C8—N3—C7—N2 | 4.8 (2) | C2—C3—C4—C5 | 0.3 (3) |
| C7—N3—C8—O3 | −2.9 (3) | C3—C4—C5—C6 | 0.0 (4) |
| C7—N3—C8—C9 | 177.33 (16) | C4—C5—C6—C1 | −0.6 (3) |
| C8—N3—C7—S1 | −177.15 (13) |
Hydrogen-bond geometry (Å, º)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N2—H2···O1 | 0.86 | 2.23 | 2.661 (2) | 111 |
| N2—H2···O3 | 0.86 | 1.93 | 2.630 (2) | 137 |
| N3—H3A···S1i | 0.86 | 2.59 | 3.4371 (14) | 168 |
| C9—H9C···O2ii | 0.96 | 2.51 | 3.428 (3) | 161 |
Symmetry codes: (i) −x+2, −y, −z; (ii) −x+3/2, y−1/2, −z+1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HB6744).
References
- Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 34, 1555–1573.
- Bruker (2005). SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
- Bruker (2009). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
- Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.
- Farrugia, L. J. (1999). J. Appl. Cryst. 32, 837–838.
- Shahwar, D., Tahir, M. N., Chohan, M. M., Ahmad, N. & Raza, M. A. (2012a). Acta Cryst. E68, o1189. [DOI] [PMC free article] [PubMed]
- Shahwar, D., Tahir, M. N., Chohan, M. M., Ahmad, N. & Raza, M. A. (2012b). Acta Cryst. E68, o1189. [DOI] [PMC free article] [PubMed]
- Shahwar, D., Tahir, M. N., Chohan, M. M., Ahmad, N. & Samiullah, (2012c). Acta Cryst. E68, o508. [DOI] [PMC free article] [PubMed]
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812016947/hb6744sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812016947/hb6744Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812016947/hb6744Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


