Abstract
At 443 kb, the map of Petunia hybrida line 3704 mitochondrial DNA is the largest yet produced from a dicot plant. Regions of similarity to known plant mitochondrial genes and to the chloroplast genome have been placed on a master circle. One long repeated sequence, apparently active in recombination, is present in three copies. Two copies of 6.6 kb occur in a direct orientation and are separated by 199 kb. A third truncated copy of 3.5 kb is inverted relative to the other two and is separated from the others by 99 and 145 kb. The presence of the recombination repeats predicts a multipartite molecular organization, consisting of four master circles and three subgenomic circles. Two other repeated regions were found not to be substrates for, or products of recombination. The absence of recombination at certain reiterated regions indicates that there is specificity of recombination at the recombination repeats.
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- Bland M. M., Levings C. S., 3rd, Matzinger D. F. The ATPase subunit 6 gene of tobacco mitochondria contains an unusual sequence. Curr Genet. 1987;12(7):475–481. doi: 10.1007/BF00419555. [DOI] [PubMed] [Google Scholar]
- Bland M. M., Levings C. S., 3rd, Matzinger D. F. The tobacco mitochondrial ATPase subunit 9 gene is closely linked to an open reading frame for a ribosomal protein. Mol Gen Genet. 1986 Jul;204(1):8–16. doi: 10.1007/BF00330180. [DOI] [PubMed] [Google Scholar]
- Boer P. H., McIntosh J. E., Gray M. W., Bonen L. The wheat mitochondrial gene for apocytochrome b: absence of a prokaryotic ribosome binding site. Nucleic Acids Res. 1985 Apr 11;13(7):2281–2292. doi: 10.1093/nar/13.7.2281. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Bonen L., Bird S. Sequence analysis of the wheat mitochondrial atp6 gene reveals a fused upstream reading frame and markedly divergent N termini among plant ATP6 proteins. Gene. 1988 Dec 15;73(1):47–56. doi: 10.1016/0378-1119(88)90311-3. [DOI] [PubMed] [Google Scholar]
- Bonen L., Boer P. H., McIntosh J. E., Gray M. W. Nucleotide sequence of the wheat mitochondrial gene for subunit I of cytochrome oxidase. Nucleic Acids Res. 1987 Aug 25;15(16):6734–6734. doi: 10.1093/nar/15.16.6734. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Braun C. J., Levings C. S. Nucleotide Sequence of the F(1)-ATPase alpha Subunit Gene from Maize Mitochondria. Plant Physiol. 1985 Oct;79(2):571–577. doi: 10.1104/pp.79.2.571. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Carle G. F., Frank M., Olson M. V. Electrophoretic separations of large DNA molecules by periodic inversion of the electric field. Science. 1986 Apr 4;232(4746):65–68. doi: 10.1126/science.3952500. [DOI] [PubMed] [Google Scholar]
- Chow S., Daub E., Murialdo H. The overproduction of DNA terminase of coliphage lambda. Gene. 1987;60(2-3):277–289. doi: 10.1016/0378-1119(87)90236-8. [DOI] [PubMed] [Google Scholar]
- Dewey R. E., Levings C. S., Timothy D. H. Nucleotide sequence of ATPase subunit 6 gene of maize mitochondria. Plant Physiol. 1985 Nov;79(3):914–919. doi: 10.1104/pp.79.3.914. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Eschenfeldt W. H., Puskas R. S., Berger S. L. Homopolymeric tailing. Methods Enzymol. 1987;152:337–342. doi: 10.1016/0076-6879(87)52040-7. [DOI] [PubMed] [Google Scholar]
- Feinberg A. P., Vogelstein B. A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal Biochem. 1983 Jul 1;132(1):6–13. doi: 10.1016/0003-2697(83)90418-9. [DOI] [PubMed] [Google Scholar]
- Fox T. D., Leaver C. J. The Zea mays mitochondrial gene coding cytochrome oxidase subunit II has an intervening sequence and does not contain TGA codons. Cell. 1981 Nov;26(3 Pt 1):315–323. doi: 10.1016/0092-8674(81)90200-2. [DOI] [PubMed] [Google Scholar]
- Gualberto J. M., Wintz H., Weil J. H., Grienenberger J. M. The genes coding for subunit 3 of NADH dehydrogenase and for ribosomal protein S12 are present in the wheat and maize mitochondrial genomes and are co-transcribed. Mol Gen Genet. 1988 Dec;215(1):118–127. doi: 10.1007/BF00331312. [DOI] [PubMed] [Google Scholar]
- Hiesel R., Schobel W., Schuster W., Brennicke A. The cytochrome oxidase subunit I and subunit III genes in Oenothera mitochondria are transcribed from identical promoter sequences. EMBO J. 1987 Jan;6(1):29–34. doi: 10.1002/j.1460-2075.1987.tb04714.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ish-Horowicz D., Burke J. F. Rapid and efficient cosmid cloning. Nucleic Acids Res. 1981 Jul 10;9(13):2989–2998. doi: 10.1093/nar/9.13.2989. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Levings C. S., 3rd, Brown G. G. Molecular biology of plant mitochondria. Cell. 1989 Jan 27;56(2):171–179. doi: 10.1016/0092-8674(89)90890-8. [DOI] [PubMed] [Google Scholar]
- Lonsdale D. M., Hodge T. P., Fauron C. M. The physical map and organisation of the mitochondrial genome from the fertile cytoplasm of maize. Nucleic Acids Res. 1984 Dec 21;12(24):9249–9261. doi: 10.1093/nar/12.24.9249. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Palmer J. D., Herbon L. A. Unicircular structure of the Brassica hirta mitochondrial genome. Curr Genet. 1987;11(6-7):565–570. doi: 10.1007/BF00384620. [DOI] [PubMed] [Google Scholar]
- Palmer J. D. Intraspecific variation and multicircularity in Brassica mitochondrial DNAs. Genetics. 1988 Feb;118(2):341–351. doi: 10.1093/genetics/118.2.341. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Rackwitz H. R., Zehetner G., Murialdo H., Delius H., Chai J. H., Poustka A., Frischauf A., Lehrach H. Analysis of cosmids using linearization by phage lambda terminase. Gene. 1985;40(2-3):259–266. doi: 10.1016/0378-1119(85)90048-4. [DOI] [PubMed] [Google Scholar]
- Rothenberg M., Hanson M. R. A functional mitochondrial ATP synthase proteolipid gene produced by recombination of parental genes in a petunia somatic hybrid. Genetics. 1988 Jan;118(1):155–161. doi: 10.1093/genetics/118.1.155. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Rothenberg M, Hanson M R. Different transcript abundance of two divergent ATP synthase subunit 9 genes in the mitochondrial genome of Petunia hybrida. Mol Gen Genet. 1987 Aug;209(1):21–27. doi: 10.1007/BF00329831. [DOI] [PubMed] [Google Scholar]
- Rottmann W. H., Brears T., Hodge T. P., Lonsdale D. M. A mitochondrial gene is lost via homologous recombination during reversion of CMS T maize to fertility. EMBO J. 1987 Jun;6(6):1541–1546. doi: 10.1002/j.1460-2075.1987.tb02398.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Siculella L., Palmer J. D. Physical and gene organization of mitochondrial DNA in fertile and male sterile sunflower. CMS-associated alterations in structure and transcription of the atpA gene. Nucleic Acids Res. 1988 May 11;16(9):3787–3799. doi: 10.1093/nar/16.9.3787. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Stamper S. E., Dewey R. E., Bland M. M., Levings C. S., 3rd Characterization of the gene urf13-T and an unidentified reading frame, ORF 25, in maize and tobacco mitochondria. Curr Genet. 1987;12(6):457–463. doi: 10.1007/BF00434824. [DOI] [PubMed] [Google Scholar]
- Stern D. B., Bang A. G., Thompson W. F. The watermelon mitochondrial URF-1 gene: evidence for a complex structure. Curr Genet. 1986;10(11):857–869. doi: 10.1007/BF00418532. [DOI] [PubMed] [Google Scholar]
- Stern D. B., Dyer T. A., Lonsdale D. M. Organization of the mitochondrial ribosomal RNA genes of maize. Nucleic Acids Res. 1982 Jun 11;10(11):3333–3340. doi: 10.1093/nar/10.11.3333. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Stern D. B., Palmer J. D. Recombination sequences in plant mitochondrial genomes: diversity and homologies to known mitochondrial genes. Nucleic Acids Res. 1984 Aug 10;12(15):6141–6157. doi: 10.1093/nar/12.15.6141. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Stern D. B., Palmer J. D. Tripartite mitochondrial genome of spinach: physical structure, mitochondrial gene mapping, and locations of transposed chloroplast DNA sequences. Nucleic Acids Res. 1986 Jul 25;14(14):5651–5666. doi: 10.1093/nar/14.14.5651. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ward B. L., Anderson R. S., Bendich A. J. The mitochondrial genome is large and variable in a family of plants (cucurbitaceae). Cell. 1981 Sep;25(3):793–803. doi: 10.1016/0092-8674(81)90187-2. [DOI] [PubMed] [Google Scholar]
- Wintz H., Chen H. C., Pillay D. T. Partial characterization of the gene coding for subunit IV of soybean mitochondrial NADH dehydrogenase. Curr Genet. 1989 Feb;15(2):155–160. doi: 10.1007/BF00435463. [DOI] [PubMed] [Google Scholar]
- Young E. G., Hanson M. R., Dierks P. M. Sequence and transcription analysis of the Petunia mitochondrial gene for the ATP synthase proteolipid subunit. Nucleic Acids Res. 1986 Oct 24;14(20):7995–8006. doi: 10.1093/nar/14.20.7995. [DOI] [PMC free article] [PubMed] [Google Scholar]


