Abstract
Mss4 (mammalian suppressor of Sec4) is an evolutionarily highly conserved protein and shows high sequence and structural similarity to nucleotide exchange factors. Although Mss4 tightly binds a series of exocytic Rab GTPases, it exercises only a low catalytic activity. Therefore Mss4 was proposed to work rather as a chaperone, protecting nucleotide free Rabs from degradation than as a nucleotide exchange factor. Here we provide further evidence for chaperone-like properties of Mss4. We show that expression levels of cellular Mss4 mRNA and protein are rapidly changed in response to a broad range of extracellular stress stimuli. The alterations are regulated mostly via the (c-jun NH2-terminal kinase) JNK stress MAPK signaling pathway and the mode of regulation resembles that of heat shock proteins. Similar to heat shock proteins, upregulation of Mss4 after stress stimulation functions protectively against the programmed cell death. Molecular analysis of the Mss4-mediated inhibition of apoptosis showed that interaction of Mss4 with eIF3f (eukaryotic translation initiation factor 3 subunit f), a member of the translation initiation complex and a protein with distinct pro-apoptotic properties, is the critical event in the anti-apoptotic action of Mss4.
Keywords: hydrogen peroxidase stress, Rabif, eIF3f, programmed cell death, AP-1, HSF1
Apoptosis is an extraordinarily regulated, energy-dependent cellular process that leads to programmed cell death. It can be triggered by internal or external stimuli like oxidative stress, heat shock, inflammation or osmotic stress. Many cellular proteins are involved in advanced or retreated regulation of apoptosis. On response to cellular stress, a series of coordinated signaling as well as transcriptional and translational events are activated, leading to temporary rise of the cellular tolerance to stress by gathering of protective proteins. These chaperones preclude protein misfolding and aggregation1 and function this way until stress reached a certain threshold.2 The best studied proteins with these properties are proteins of the heat shock protein family.3
Mss4 (mammalian suppressor of Sec4) is an evolutionarily highly conserved protein, which is expressed in all mammalian tissues.4 It has been shown that Mss4 interacts with exocytic Rab GTPases and with the conserved KXGFFKR intracellular domain of integrin α-subunits.4, 5, 6 Although it was first proposed to function as a guanine nucleotide exchange factor (GEF) for Rab GTPases,7 it was soon described as a quite inefficient GEF and was thus suggested to function rather as a chaperone for exocytic Rab GTPases than as a GEF.6, 8, 9 On the other hand its interaction with integrins was shown to be important for coordinated activation of MMP-2 and -9 and remodeling of extracellular matrix proteins.10 In contrast to the scant functional data about Mss4, its structure has been solved by both NMR and crystallographic methods.8, 11, 12 The fold of Mss4 is a central β-sheet, flanked by a β-hairpin and a small variable sheet. The four conserved regions, CR1–CR4, build a primary hydrophobic core with a Zn2+-binding site and encode a structural subdomain responsible for interaction with Rab GTPases. Structurally, Mss4 shows a striking similarity with the translationally controlled tumor-associated proteins.13 which are assumed to function as cellular chaperones protecting cells from heat shock14 and regulating cell growth and acute allergic response.15
The 47-kDa eIF3f (eukaryotic translation initiation factor 3 subunit f) protein has been found to have distinct pro-apoptotic features. Originally it was described as part of the multi-subunit eIF3 translation initiation factor that promotes the binding of eIF2, GTP and Met-tRNA to the 40S ribosome subunit to form the 43S translation preinitiation complex.16 eIF3 is built from 13 non-identical subunits. The active core consists of five subunits (eIF3a, -b, -c, -g, -i) leaving the other eight to be modulators of the eIF3 activity.17 Recent studies have shown that eIF3f might not be necessary for global translation initiation, but rather inhibits translation.18, 19 It harbors a MPN (Mpr1, Pad1 N-terminal) domain, which is characteristic for proteins of the Mov34 family. These proteins are involved in the modulation of the proteasome, translation initiation, pre-mRNA splicing and transcription.20 Other studies discovered that eIF3f is downregulated in many tumors, and it has been shown that its overexpression leads to decreased proliferation and increased apoptosis of tumor cells.21, 22, 23 This pro-apoptotic property was associated with the interaction of eIF3f with CDK11p46 (cyclin-dependent kinase 11). This protein is a cleavage product of CDK11p110, which in turn is a target protein for caspase-3 and therefore seems to be an important downstream effector of the apoptotic signaling.24
Here we provide new data suggesting that Mss4 behaves similar to a heat shock protein in response to extracellular stress and that Mss4 inhibits stress-mediated apoptosis via direct interaction with eIF3f.
Results
Regulation of Mss4 promoter activity
To understand how the expression of the Mss4 gene (accession no. NP_002862.2) is regulated, we performed a general examination of the complete 3.6-kb-long potential promoter region located between the Klh12 gene sequence and the translational atg start codon of Mss4 using the transcription element search software (TESS, Baxevanis, Wiley, Weinheim, Germany). The search revealed 47 potential TGAG/CTCA binding sites for AP-1 (activator protein-1) and 34 NGAAN sites for HSF1 (heat shock factor 1) transcription factors (Figure 1a). To explore whether these sites also have a functional role in the transcriptional regulation of Mss4, the promoter sequence of Mss4 was cloned in front of a luciferase gene and transfected into human melanoma A7 cells. In agreement with the promoter screening data, cotransfection of the reporter gene with plasmids coding for c-jun, c-fos, the well-known components of AP-1 transcription factor25 or HSF1 but not Elk1, a transcription factor of the ETS family26 greatly changed the transcription of the reporter gene (Figure 1b). Of note, expression of both AP-1 and HSF1 transcription factors significantly repressed Mss4 promoter activity. An effective inhibition of the reporter gene was also observed when a 1-kb-long promoter region containing only 8 and 10 sites for AP-1 and HSF1 transcription factors, respectively, was used (data not shown).
Both HSF1 and AP-1 are transcription factors that are activated by stress factors. To study whether Mss4 promoter activity is generally downregulated by stress stimuli, HeLa cells were transfected with the luciferase reporter gene construct for 40 h and stimulated afterward for additional 5 h with different stress-inducing components or cytokines and growth factors. Indeed, the Mss4 promoter activity was significantly reduced after application of all stress stimuli used but not by growth stimulating factors (Figure 1c). The effect was independent of cell type used, as human HEK293 and A7, epithelial or melanoma cells, respectively, as well as mouse adenocarcinoma TS/A cells showed similar results (Supplementary Figure 1).
As a heat shock factor, HSF1 is rapidly phosphorylated and activated by temperature stress27, 28 and temperature increase is probably the easiest way to study the role of endogenous HSF1. This, however, results in inactivation of the luciferase reporter enzyme. Therefore we incubated HeLa cells with celastrol, a known activator of HSF1 and a potent antioxidant.29 Indeed, celastrol stimulation was even more efficient in phosphorylation of endogenous HSF1 protein than incubation of cells at 42 °C alone (Figure 1d). Accordingly, incubation of HeLa cells with either 6 or 10 μM of celastrol significantly affected the activity of the luciferase reporter gene (Figure 1e). Interestingly, similar to AP-1 and in agreement with overexpression of HSF1, activation of the endogenous transcription factor also repressed the Mss4 promoter activity. Thus, the gained information of the promoter studies indicates a context between stress and heat stimulation and the regulation of Mss4.
Expression of endogenous Mss4 mRNA and protein changes in response to stress stimuli
To analyze the impact of heat on the mRNA and protein expression of Mss4, HeLa cells were incubated at 42 °C for increasing time periods. The mRNA levels were analyzed by qRT-PCR and protein expression by western blotting. As expected, the increased temperature decreased the cell viability significantly, with almost a linear decline of cell number with the time (Figure 2a). The amounts of Mss4 mRNA (Figure 2b) and protein (Figure 2c) in still alive cells, however, raised up at early stages of heat stress but declined with prolonged heat stimulation, a kinetic that is very typical for heat shock proteins.30, 31 Although the maximum of mRNA expression was achieved at 4 h of heat shock application, the highest protein expression was measured 4 h later or 8 h after heat shock initiation.
In addition to the increase of protein expression after temperature rise, heat shock proteins also stabilize their mRNA.31 The half-life time of heat shock protein mRNA is usually significantly increased in stressed cells, which ensures an amplified protein amount in cells in order to protect cellular proteins from misfolding and aggregation. Thus, we were wondering whether Mss4 did show similar properties after heat shock application. To analyze the mRNA half-life of Mss4, the cells were stressed for 2 h with 43 °C and the transcription of cells was inhibited by actinomycin D for additional time, up to 24 h, at 37 °C. The amount of Mss4 mRNA in actinomycin D treated cells after different recovery times was compared with non-heat-stressed control cells (Figure 2d). This analysis showed that similar to heat shock proteins, the stability of Mss4 mRNA was also increased by the short heat shock. Although the half-life of Mss4 mRNA in untreated cells was about 6.5 h, it rose to ∼13 h in temperature challenged cells.
To judge the acquired results against other stress stimulation and to further analyze the role of the AP-1-induced repression of Mss4, we applied HeLa cells to hydrogen peroxide instead of heat shock. Hydrogen peroxide is a strong inducer of the cellular stress response and was one of the most prominent inhibitors of Mss4 promoter activity in our screen (Figure 1c). Similar to heat stimulation, application of hydrogen peroxide resulted in a strong decrease in HeLa cell number (Figure 2e). Also expression kinetics of Mss4 mRNA and protein were much alike the temperature challenge curves. The mRNA levels of Mss4 increased right after the beginning of the hydrogen peroxide stimulation, peaked after 8h and decreased back to the basal level afterwards (Figure 2f). The increase in Mss4 protein expression was, similar to heat shock treatment, also delayed compared with mRNA and peaked later (Figure 2g). Similarly, the Mss4 mRNA half-time increased after hydrogen peroxide application from ∼6.5 h to 15 h (Figure 2h).
JNK and p38 stress MAPK pathways regulate Mss4 expression
Both HSF1 and AP-1 transcription factors are downstream targets of JNK and p38 MAPK stress signaling cascades and both heat shock and stress stimuli, like hydrogen peroxide are strong activators of the JNK- and p38- cascades.32, 33 Therefore, we next studied whether changes in activation of the two stress MAPK pathways would influence transcriptional activity of the Mss4 gene. The luciferase reporter gene containing the Mss4 promoter was transfected into A7 melanoma cells along with constructs representing either dominant negative (d.n.) or constitutively active (c.a.) forms of different members of MAPK signaling cascades and the luciferase activity measured 48 h later distinguished the Mss4 promoter activity. Data presented in Figure 3 clearly show that activation of both p38 and JNK pathway achieved by expression of c.a. mutants of the pathway members led to a significant reduction in Mss4 promoter activity. Further, inhibition of the JNK (Figure 3b) but not of the p38 (Figure 3a) pathway by d.n. mutants was additionally able to provoke the opposite effect, to enhance the Mss4 promoter activity. In good agreement with these data, inhibition of p38 or JNK kinases with SB203580 or SP600125 chemical compounds (Supplementary Figure 2) abrogated the inhibitory effect of constitutive active MKK6 or MKK7 (Figures 3c and d). Therefore it can be concluded, that the transcriptional expression of Mss4 is primarily regulated by MAPK stress signaling cascades.
Taken together, our results show that expression of Mss4 is regulated by stress stimuli and that changes in its expression resemble that of heat shock proteins. Shortly after stress application its mRNA is stabilized resulting in increased protein expression, but ongoing stress stimulation leads to downregulation of both mRNA and protein levels. Together, these data imply a possible role of Mss4 protein in protection of cells from stress stimuli.
Mss4 downregulation induces cell apoptosis
Ongoing presence of stress often ends in programmed cell death. To investigate whether Mss4 is involved in regulation of this process, we either upregulated or downregulated its expression in cells and subjected them to different stress stimuli. A7 melanoma cells instead of HeLa cells were used for these experiments because we couldn't succeed in stable overexpression or downregulation of Mss4 in HeLa cells. Transduction of a myc-tagged human Mss4 by retroviral approach ensured a constitutive overexpression of Mss4 protein. To downregulate the Mss4 expression, these cells were then transiently transfected with Mss4 specific siRNA. Preliminary experiments showed that this procedure was very efficient, as only about 10% of the endogenous Mss4 protein was usually available 48 h after transfection and the amount did not change significantly during at least the next 48 h. Of note, the siRNA also efficiently suppressed the synthesis of the recombinant myc-tagged Mss4 protein (Figure 4a). Monitoring cell morphology as well as measuring the number of apoptotic cells by a modified Nicoletti assay34 48h after siRNA transfection showed an increase in the number of round and dead cells that was already twofold higher than in control cells, which were transfected with control RNA. The control cell population itself was hardly affected. Additional stimulation of cells with either 42 °C or 5 mM hydrogen peroxide induced, as expected, apoptosis in both cell types but noteworthy, the increase of apoptotic cells was much higher in siRNA transfected cells, in which the Mss4 protein was efficiently downregulated (Figures 4b and c).
The anti-apoptotic properties of Mss4 were further confirmed by measuring the so-called Poly (ADP-ribose) Polymerase- or PARP-cleavage. PARP is a target of Caspase-3 and its cleavage, thus, resembles the ongoing apoptotic process. As data of Figure 4d indicate, A7 melanoma cells show an up to twofold lower PARP-cleavage after hydrogen peroxide stimulation when they have been transiently transfected with a myc-tagged Mss4 plasmid compared with empty vector transfected cells. Together, these data apply that the amount of Mss4 protein in cells is critical for triggering cells into programmed cell death.
Interaction of Mss4 with eIF3F prevents the eIF3F-mediated apoptosis
To gain insight into possible molecular mechanism by which Mss4 exercise the anti-apoptotic function, we screened a human placenta cDNA library for potential Mss4 binding proteins employing the yeast two-hybrid approach. The most abundant and prospect interaction partner was eIF3f, the eukaryotic translation initiation factor 3 subunit f. The 47-kDa eIF3f protein is not only a potential part of the functional core of eIF3, but also possesses pro-apoptotic properties as recent studies have shown.23, 35 Interaction analysis of the two proteins showed that only mutation of the F75 amino acid located on the interface of the conserved core domain of Mss4 but not deletion of the flexible non-conserved N-terminal part or the EF-loop abrogated the association with eIF3f. This holds for direct yeast two-hybrid interaction tests and for co-immunoprecipitation assays after overexpression of both proteins in mammalian cells as well (Figures 5a and b, lanes 1–3). Further, removing of the first N-terminal 20 amino acids, including the first β-strand of Mss4 abrogated the observed Mss4/ eIF3f interaction, suggesting that maintaining of the intact protein structure is critical for this binding.
To study whether stress application influences the binding of Mss4 to eIF3f, HEK293 cells were transfected with myc-tagged eIF3f along with GST-tagged Mss4 and stimulated for 8h with 5 mM H2O2 or left untreated. The GST pull-down analysis showed that stress application strengthened the interaction between Mss4 and eIF3f (Figure 5b, compare lanes 2 and 5). Of note, similar to non-stressed cells, only wt Mss4 but not the F75A mutated version was able to bind eIF3f in hydrogen peroxide stimulated cells. In agreement with these data, only cells stably overexpressing wt Mss4 but not the Mss4 F75A protein were able to withstand a long-lasting (16 h) hydrogen peroxide stress (Figure 5c), suggesting that binding of Mss4 to eIF3f is rather critical for escaping from apoptosis. Transfection of these cells with Mss4 specific siRNA confirmed this thesis and showed that expression of an intact Mss4 protein is indeed needed for efficient protection against apoptosis (Figure 5d).
To further investigate the significance of the Mss4/eIF3f interaction in context of apoptosis, we transiently transfected A7 cells with plasmids coding for Mss4, eIF3f or for both and stimulated the cells 40 h later for additional 8 h with 5 mM hydrogen peroxide and studied the cell morphology. Although overexpression of Mss4 did not have an impact on the cell morphology in non-stimulated cells, overexpression of eIF3f already led to an increased number of rounded up and lysed cells. As expected, the H2O2 stress resulted in increased damage of vector-transfected control cells and especially of eIF3f transfected cells. Of note, in contrary to eIF3f, overexpression of Mss4 was not only able to protect the destructive effect of hydrogen peroxidase but also significantly reduced the cell damage mediated by overexpressed eIF3f protein in control and H2O2 stimulated cells as well (Figure 5e).
Finally, to substantiate the role of Mss4/eIF3f interaction in protection of stress-induced apoptosis, we transiently transfected divergent A7 melanoma cell lines that constitutively expressed different levels of either endogenous, recombinant wt or F75A mutated Mss4 proteins (Figure 5f) with a plasmid coding for human eIF3f and subsequently subjected them to hydrogen peroxide stress for 8 h. Cells transduced with empty vector alone served as controls. The constitutive overexpression of recombinant Mss4 variants was achieved by retroviral infection and the constitutive knockdown of endogenous Mss4 protein by lentiviral transduction of Mss4 specific shRNA (Figure 5f). The degree of apoptosis was measured by the modified Nicoletti assay after staining of cells with propidium iodide (PI) (Figure 5g). As expected, only overexpression of wt Mss4 was able to lessen the impact of the H2O2, the eIF3f and their combined apoptosis as well. Mss4-knockdown had, similar to overexpression of Mss4 F75A no protective effect, but yet promoted the apoptotic cell death.
The pro-apoptotic action of eF3F was reported to be based on its ability to suppress protein translation being phosphorylated by CDK11p46.23, 35, 36 To study whether Mss4 is capable to abolish this specific property of eIF3f protein, A7 melanoma cells were transfected with pCS2+MT empty vector, pCS2+MT-Mss4 and pCS2+MT-eIF3f or both plasmids together in addition to pRL-CMV vector in which the luciferase reporter gene is controlled by the CMV promoter. Luciferase activity measured 24 h later showed that eIF3f efficiently downregulated luciferase synthesis, whereas Mss4 alone had no effect. However, when Mss4 was co-expressed with eIF3f, it abrogated the suppressive function of eIF3f (Figure 6a). Quantification of luciferase mRNA by qRT-PCR demonstrated that translation of luciferase gene was not influenced by overexpression of Mss4 (Figures 6b–d), indicating that Mss4 is indeed able to abolish the eIF3f-mediated inhibition of translation.
Discussion
We show here that expression of Mss4 is strongly regulated by stress stimuli at both transcription and posttranscriptional levels. Although Mss4 is upregulated at early stages of stress stimulation, it drops down at later stages. We further show that high expression levels of Mss4 protein are beneficial for cells, as they protect cells from stress-induced apoptosis. Finally, we illustrate that anti-apoptotic properties of Mss4 are based on its tight binding to eIF3f protein, which results in inhibition of pro-apoptotic activity of the latter.
Exposure of cells to high temperature or other stress stimuli lead to increased expression of heat shock proteins that have a clear role, to protect cellular proteins from aggregation and misfolding. When stress is extended and reaches particular thresholds the protection usually fails and cells start the programmed cell death. The upregulation of heat shock proteins on heat stimulation is usually temporary30 and is achieved not only through enhanced HSF transcription rate but also via stabilization of the mRNA.31 The half-life of their mRNA is increased in order to ensure a boost of protein to do their protective job. Mss4 protein is not described as a heat shock protein so far, but in this study we were able to demonstrate that Mss4 shows just these attributes. Its striking structural similarity to translationally controlled tumor-associated proteins13 already suggested this. Indeed, after application of 42 °C for a longer time or hydrogen peroxide stimulation, Mss4 was transiently upregulated at both mRNA and protein levels and half-life of its mRNA was prolonged compared with unstressed cells. Furthermore, similar to heat shock proteins, the amount of Mss4 dropped down with ongoing stress accomplishing the abolishing of cell resistance to stress and triggering them into the programmed cell death. Finally, the promoter sequences of Mss4 contains the characteristic 14-bp-long pelham motif that is common to the vast majority of heat shock protein gene promoters.37 In terms of these data, Mss4 can be viewed as a novel heat shock protein. Also, its transcriptional regulation is controlled by the p38 and JNK MAPK stress signaling cascades, a feature common to many heat shock proteins.38, 39
Although eIF3f is known as a subunit of the core translation initiation factor eIF3 with a negative impact on translation, it was also shown to have pro-apoptotic activities.23, 35, 36 Overexpression of eIF3f facilitated apoptosis, whereas its downregulation or genetical loss had the opposite effect.23 Furthermore, during apoptosis eIF3f has been shown to be bound and phosphorylated by CDK11p46 kinase. The CDK11p46 is the enzymatically active isoform of CDK11p110 which in turn is cleaved by caspase 3 under apoptotic conditions. The phosphorylated eIF3f then increasingly associates with the eIF3 protein complex leading to inhibition of translation and to increased apoptosis.35 We showed here that the Mss4 protein amount not only increases during first stages of stress stimulation, but that Mss4 also efficiently binds the eIF3f protein. The association of Mss4 with eIF3f suggests that Mss4 is probably involved in regulation of protein translation. Moreover, enhanced expression of Mss4 in A7 melanoma cells neutralized the translation inhibitory effect of eIF3f, implying that association of eIF3f with Mss4 is of importance in protection of cells from apoptosis and that the anti-apoptotic properties of Mss4 are based on prevention of translation inhibition by eIF3f. In contrast to Mss4, the expression of eIF3f is not changed during apoptosis of melanoma cells (Supplementary Figure 3 and Shi et al35). Of note, only overexpression of wt Mss4 protein but not the F75A mutant that cannot bind to eIF3f was able to inhibit the eIF3f-mediated apoptosis. On the basis of these results and the already published data, we hypothesize that Mss4 binds eIF3f avoiding its interaction with and phosphorylation by CDK11p46 (Figure 7). This prevents the incorporation of eIF3F into the functional eIF3 protein complex allowing protein translational and inhibiting apoptosis. In other words, at early stages of heat shock or other stress stimulation increasing amounts of Mss4 protein efficiently bind the eIF3f preventing its interaction with CDK11p46. When the number of Mss4 molecules in cells dropped down owing to ongoing stress, the CDK11p46 binds now and phosphorylates the released eIF3f resulting in inhibition of translation and initiation of apoptosis.
Materials and Methods
DNA constructs and yeast two-hybrid screen
For the reporter gene assays the putative complete Mss4 (alsp known as Rabif; accession no. NM_002862.2) promoter sequence and the 1.0-kb large atg-proximal sequence only were cloned into the pGL2-luc vector (pGL2-Mss4-luc), correct in frame cloning was verified by DNA sequencing. For evaluation of transfection efficiency a CMV-driven ß-galactosidase construct was used (Galacto-LightPlus System, Applied Biosystems, Foster City, CA, USA). The expression constructs for pFA2:cJun; pFA2:Elk1; pFA:cFos; kRSPA:MKK6 c.a (T658E/S670E); kRSPA:MKK6 d.n. (K82A); kRSPA:MKK3 c.a (S189E/T211E); kRSPA:MKK3 d.n. (S189A/T211A); pRK5:CDC42 wt and d.n. (N17); pRK5:Rac1 wt and d.n.(N17); pEBG:MKK4 wt and d.n.(K129R) and pCS3+MT:MKK7 c.a. (S271E, T275E,S277E) and also pCS3+MT:MKK7 d.n. (S271A, T275A,S277A) were published elsewhere.40 The expression of appropriate proteins was tested in preliminary western blot analysis (data not shown).
The pCS2+MT: HSF1 was produced by cloning the human HSF1 sequence (accession no. NM_005526.2) in frame behind the myc-tag using the following primers: fwd 5′-ATAGAATTCAATGGATCTGCCCGTGGGCCCC-3′ and rev 5′-ACACTCGAGCTAGGAGACAGTGGGGTCCTTGG-3′ from human HeLa cell cDNA as template. For the transient expression of myc-tagged Mss4 and eIF3f (accession no. NM_003754.2) the respective human sequences were cloned into pCS2+MT vector. The pEBG: Mss4 wt and F75A constructs were described before.10 For stable expression of Mss4 wt and F75A mutant in A7 melanoma cells, the myc-tagged human Mss4 wt and F75A were removed from the pCS2+MT plasmids and recloned into the pBabe-puro vector.
For the yeast two-hybrid screen a cDNA fragment coding for full-length human Mss4 (accession no. NM_002871) was inserted into the DNA-binding domain vector pAS2-1 and used as bait for screening a human placenta cDNA library cloned into pACT2 yeast two-hybrid vector (MATCHMAKER, Clontech, Palo Alto, CA, USA). The yeast two-hybrid screen for proteins binding to Mss4 was performed as described in.6 Mutants of Mss4, Mss4-del1 (aa 13-123); Mss4-del2 (aa 20-123); Mss4-EF loop (aa 49–55 were deleted) and Mss4-F75A (F at position 75 was exchanged for A), cloned into pAS2-1 vector were derived by extrasize-overlapping PCR procedure with appropriate primers and were described in.10
Cell culture and stimulations
Human HeLa cervix carcinoma cells were maintained in DMEM and human A7 melanoma cells in MEM supplemented with 10% FCS at 37 °C and 5% CO2. Cell stimulations were carried out under regular temperature and pressure conditions except for heat shock treatments, which have been conducted at 42 or 43 °C. Celastrol (Biomol, Hamburg, Germany) was used in concentrations of 6 and 10 μM with DMSO as solvent control. For reporter gene analysis HeLa cells were stimulated for 5 h with: 10 ng/ml PDGF, 50 ng/ml EGF, 10% FCS, 10 μg/ml anisomycin, 5 ng/ml TNFα, 5 mM hydrogen peroxide or 600 mM sorbitol. The inhibition of p38- and JNK-stress cascades was accomplished by treatment with 20 μM SB203580 and 10 μM SP600125, respectively (Calbiochem, Nottingham, UK).
Half-life time estimation for Mss4 mRNA
For these kind of assay A7 melanoma cells were chosen because they express more endogenous Mss4 than HeLa cells. A7 cells were cultivated under regular conditions to confluency of 50–60%. The MEM with 10% FCS was exchanged for complete medium containing 5 μg/ml actinomycin D for time periods up to 24h. Additionally, to study the half-life time of Mss4 mRNA in stressed cells, the A7 cells were treated for 24 h with 5 μg/ml of actinomycin D. A 43 °C heat shock was performed 2 h ahead of the actinomycin D treatment, whereas the hydrogen peroxide stimulation (5 mM) in parallel to the transcription inhibition. At the chosen time points lysates were taken in order to isolate the RNA. Subsequently the cDNA synthesis and qRT-PCR were performed. The acquired Mss4 mRNA levels were calculated relative to the unstimulated controls.
Reporter gene assay
Transfection of HeLa cells was achieved with PEI (polyethylenimine). A7 cells were transfected with FuGENE-6 (Roche, Penzberg, Germany) according to the manufacturer's instructions. The reporter plasmids pGL2-Mss4-luc (500 ng) and pCMV-βGal (100 ng) were co-transfected with 500ng of expression vectors for transcription factors, MKKs, or other constructs of the JNK and p38-pathway. The total plasmid DNA per dish was kept constant by adding the appropriate amount of empty expression vector. Each transfection was carried out in triplicate. Luciferase activities were measured 48 h after transfection using the Luciferase Assay System (Promega, Madison, WI, USA) and were normalized to -β Galactosidase activity.
Western blotting and pull down binding assays
For western blottings cells were washed twice with PBS and lysed in RIPA supplemented with 1 mM sodium vanadate, 200 μM pefablock, 5 μg/ml leupeptin, and 5 μg/ml aprotinin for 10 min on ice. The lysates were cleared by centrifugation at 10 000 g for 10 min at 4 °C. Supernatants were resolved by 10, 12.5 or 15% SDS-PAGE, and, after electroblotting onto a nitrocellulose membrane, proteins were detected with appropriate antibodies using the ECL detection system (Bio-Rad Inc., Munich, Germany). The antibodies used were: affinity purified rabbit polyclonal anti-Mss4, rabbit polyclonal HSF1 (Cell Signaling, Frankfurt, Germany); mouse monoclonal anti-beta-Actin (Sigma, Hamburg, Germany), rabbit polyclonal anti-cleaved PARP (Asp214) (Cell Signaling); mouse monoclonal anti-myc (9E10); mAb anti-GST (G3E7); rabbit polyclonal anti-phospho-MAPKAPK-2 (Cell Signaling); mouse monoclonal anti-phospho-JNK (Becton Dickinson, Heidelberg, Germany). All western blotting experiments were repeated 2 to 4 times.
For GST pull-down analysis 2 × 105 HEK293 cells were plated on six-well dishes 48 h before transfection, which was performed with PEI. 1 μg of each cDNA plasmid was used per transfection, and the total amount (2 μg/well) was equalized if necessary with appropriate empty expression vectors. Forty hours post transfection cells were washed twice with PBS and lysed in a Triton lysis buffer (TLB), that contained 0.5% Ttriton-X100, 25 mM tris/HCl pH 7.5 and 137 mM NaCl, supplemented with 1 mM sodium vanadate, 200 μM pefablock, 5 μg/ml leupeptin, and 5 μg/ml aprotinin. Two hundred micrograms of total TLB cell lysates were rotated for 2 h at 4 °C with glutathione-sepharose beads. The beads were subsequently washed three times with TLB, resuspended in Laemmli loading buffer and heat-denatured. To reduce the nonspecific binding of proteins to sepharose beads, the latter were blocked with 1% BSA in TLB before incubation with cell lysates. Samples were resolved by 12.5% SDS-PAGE followed by electroblotting onto nitrocellulose membrane. The detection of co-precipitated proteins was performed with mouse-anti-myc (clone 9E10) and mouse-anti-GST (clone G3E7) antibodies.
mRNA isolation, cDNA synthesis and qRT-PCR
Cell lysates of accordingly stimulated cells were taken and mRNA was isolated with RNeasy Minikit (Qiagen, Hilden, Germany). cDNA synthesis was performed with Revert Aid H Minus reverse transcriptase (Fermentas, St. Leon-Rot, Germany) according to the protocol of the manufacturer. Quantitative real time polymerase chain reactions were performed with a Roche Light Cycler 480 II. RT-PCR primers were: human GAPDH fwd 5′-GCATCCTGGGCTACACTGAG-3′, rev 5′-TGCTGTAGCCAAATTCGTTG-3′ human Mss4 fwd 5′-CTTTTCCTTCCCTCCATGAGAA-3′, rev 5′-AGACCAGAAACTTGATGTTGCCCA-3′, human eIF3f fwd: 5′-TGACAGTGAAATACGCGTAC-3′, rev 5′-GTCACTTGAGAGTCCAATCAC-3′, luciferase fwd: 5′-CAACTGCATAAGGCTATGAAGAGA-3′, rev 5′-ATTTGTATTCAGCCCATATCGTTT-3′.
Quantification of apoptosis
HeLa and A7 cells were treated with either heat or hydrogen peroxide for the desired time periods, the supernatants were collected, the cells detached with 5 mM EDTA in PBS at room temperature. The consolidated cells and supernatants were centrifuged at 5000, r.p.m. for 5 minutes, the pellets washed once with PBS and then resuspended in 70% ethanol and fixed overnight at −20 °C. Before staining with PI, the cells were treated with 250 μg/ml PureLink RNase A (Invitrogen, Karlsruhe, Germany) for 30 minutes at 37 °C. The PI staining (10 μg/ml) was done for 30 minutes at 37 °C. The amount of apoptotic cells was evaluated by flow cytometry (FACSCalibur, BectonDickinson, Heidelberg, Germany) as described previously.
Direct yeast two-hybrid interaction assays
The yeast strain Y190 was cotransformed with the pAS2-1 plasmid containing the GAL4-BD fused with appropriate cDNAs as bait and with pACT2 plasmids containing cDNAs fused to GAL4-AD as prey. Transformants were grown on SD medium lacking leucine, tryptophan and histidine in the presence of 25 mM 3-amino-1,2,4-triazole. On day 6 the colonies were tested for the lacZ reporter gene activity in a β-Gal filter assay. The interaction was scored as negative (−) when no blue colonies were visible after 8 h, and scored as: weak (+), intermediate (++), or strong (+++) when blue colonies became visible after 8 h, 4 h or 1 h, respectively.
Acknowledgments
This work was supported by the Wilhelm Sander-Stiftung Grant 2007.029.1 and SFB492A17 to VW and by SFB/Transregio 23 (TPA9) and DLC (SWS SCHN 474/4-1) to SWS.
Glossary
- Mss4
mammalian suppressor of Sec4
- eIF3f
eukaryotic translation initiation factor 3 subunit f
- HSF1
heat shock factor 1
The authors declare no conflict of interest.
Footnotes
Supplementary Information accompanies the paper on Cell Death and Disease website (http://www.nature.com/cddis)
Edited by RA Knight
Supplementary Material
References
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