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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 May 5;68(Pt 6):m741–m742. doi: 10.1107/S1600536812019654

[Bis(pyridin-2-ylmeth­yl)amine-κ3 N,N′,N′′]tricarbonyl­rhenium(I) bromide hemihydrate

Marietjie Schutte a,*, Theunis J Muller a, Hendrik G Visser a, Andreas Roodt a
PMCID: PMC3379082  PMID: 22719303

Abstract

The title compound, fac-[Re(C12H12N3)(CO)3]Br·0.5H2O, crystallizes with a cationic rhenium(I) unit, a bromide ion and half a water mol­ecule, situated on a twofold rotation axis, in the asymmetric unit. The ReI atom is facially surrounded by three carbonyl ligands and a tridentate bis­(pyridin-2-ylmeth­yl)amine ligand in a distorted octahedral environment. N—H⋯Br, O—H⋯Br, C—H⋯O and C—H⋯Br hydrogen bonds are present in the crystal structure and π–π stacking is also observed [centroid–centroid distances = 3.669 (1) Å and 4.054 (1) Å], giving rise to a three-dimentional network. The mol­ecules pack in a head-to-head fashion along the ac plane.

Related literature  

For the synthesis of the fac-ReI-tricarbonyl synthon, see: Alberto et al. (1996). For a similar structure, see: Banerjee et al. (2002). For related structures, see: Raszeja et al. (2011); Banerjee & Zubieta (2005); Banerjee et al. (2004, 2006); Kunz et al. (2007); Wei et al. (2006); Moore et al. (2010).graphic file with name e-68-0m741-scheme1.jpg

Experimental  

Crystal data  

  • [Re(C12H12N3)(CO)3]Br·0.5H2O

  • M r = 558.4

  • Monoclinic, Inline graphic

  • a = 21.542 (5) Å

  • b = 11.684 (5) Å

  • c = 15.126 (5) Å

  • β = 118.172 (5)°

  • V = 3356 (2) Å3

  • Z = 8

  • Mo Kα radiation

  • μ = 9.64 mm−1

  • T = 100 K

  • 0.34 × 0.12 × 0.09 mm

Data collection  

  • Bruker APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2008) T min = 0.265, T max = 0.432

  • 28139 measured reflections

  • 4032 independent reflections

  • 3688 reflections with I > 2σ(I)

  • R int = 0.031

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.014

  • wR(F 2) = 0.031

  • S = 1.05

  • 4032 reflections

  • 220 parameters

  • 2 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 1.14 e Å−3

  • Δρmin = −0.60 e Å−3

Data collection: APEX2 (Bruker, 2008); cell refinement: SAINT-Plus (Bruker, 2008); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg & Putz, 2005); software used to prepare material for publication: WinGX (Farrugia, 1999).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812019654/ru2033sup1.cif

e-68-0m741-sup1.cif (23.9KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812019654/ru2033Isup2.hkl

e-68-0m741-Isup2.hkl (193.7KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Selected bond lengths (Å).

Re1—C1 1.918 (2)
Re1—C2 1.921 (2)
Re1—C3 1.928 (2)
Re1—N1 2.1819 (19)
Re1—N2 2.1906 (18)
Re1—N3 2.2104 (19)

Table 2. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N3—H3⋯Br1 0.85 (2) 2.50 (2) 3.340 (2) 170 (3)
O4—H4A⋯Br1 0.94 (2) 2.31 (2) 3.2429 (18) 171 (3)
C11—H11⋯O2i 0.93 2.57 3.023 (3) 111
C12—H12⋯O1ii 0.93 2.57 3.285 (3) 134
C21—H21⋯O2i 0.93 2.56 3.193 (3) 125
C26—H26A⋯Br1iii 0.97 2.88 3.767 (3) 153
C26—H26B⋯O4 0.97 2.31 3.221 (3) 156

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

We would like to thank the University of the Free State, the Chemistry Department, the NRF and Sasol Ltd for financial support.

supplementary crystallographic information

Comment

N,N-Bis(2-pyridylmethyl)2aminetricarbonylrhenium(I)bromidehydrate crystallized in the monoclinc spacegroup with the cationic fac- [Re(CO)3({2-pyridyl-CH2}2NH)], bromide anion and half a water molecule in the assymetric unit. The tridentate ligand, N,N-(2-pyridylmethyl)2amine, coordinate facially to the ReI core and the other three positions are occupied by carbonyl ligands. The oxygen atom in the water molecule occupies a special position on a mirror plane (Wyckoff position 4e, site symmetry 2). Seven hydrogen bonds (N—H···Br, O—H···Br, C—H···O, C—H···Br) are observed in the crystal structure. Some weak π–π stacking, with a centroid-to-centroid distance of 3.669 (1) Å and 4.054 (1) Å, is also observed between the different pyridine rings of the ligand system. These interactions complete a three dimensional polymericnetwork formed between the ReI units. Overall, the bond distances and angles compare well with the similar structure reported by Banerjee et al. (2002), N,N-bis(2-pyridylmethyl)2aminetricarbonylrhenium(I)bromide, that crystallized in the tetragonal P41 spacegroup. The three Rhenium to carbonyl distances ranging from 1.918 (2) Å to 1.928 (2) Å compare well to similar structures (Raszeja et al. (2011), Banerjee et al. (2004), Kunz et al. (2007), Wei et al. (2006), Banerjee et al. (2005), Banerjee et al. (2006), Moore et al. (2010)) and also to the N,N-Bis(2-pyridylmethyl)2aminetricarbonylrhenium(I)bromide structure reported by Banerjee et al. (2002) of 1.901 (6) Å to 1.926 (7) Å. The Re-amine distance of 2.210 (2) Å and the Re-pyridine distances of 2.182 (2) Å and 2.191 (2) Å are slightly longer than the Re-Amine distance of 2.187 (4) Å and the Re-pyridine distances of 2.177 (5) Å and 2.183 (5) Å reported by Banerjee et al. (2002).

Experimental

[NEt4]2[Re(CO)3Br3] (75 mg, 0.097 mmol), as prepared by Alberto et al. (1996), was dissolved in 20 ml of water, acidified with HNO3 to pH 2.2. Silver nitrate (50 mg, 0.291 mmol) was added to the solution and stirred for 24 h at room temperature. The grey silver bromide precipitate was filtered off, N,N-bis(2-pyridylmethyl)amine (19.4 mg, 0.100 mmol) was added to the filtrate and stirred overnight at room temperature. The colourless crystals were grown from the filtrate by slow evaporation.

Refinement

Aromatic H atoms were positioned geometrically and allowed to ride on their parent atoms, with Uiso(H) = 1.2Ueq(parent) of the parent atom with a C—H distance of 0.93. The methene H atoms were placed in geometrically idealized positions and constrained to ride on its parent atoms with Uiso(H) = 1.2Ueq(C) and at a distance of 0.97 Å. The N– bound H atom was placed from the electron density map.

Figures

Fig. 1.

Fig. 1.

Representation of the title compound, showing the numbering scheme and displacement ellipsoids (50% probability).

Fig. 2.

Fig. 2.

Packing of the title compound in the unit cell and the observed π-π stacking in the crystal structure, indicated by dashed lines (hydrogen atoms omitted for clarity).

Crystal data

[Re(C12H12N3)(CO)3]Br·0.5H2O F(000) = 2104
Mr = 558.4 Dx = 2.21 Mg m3
Monoclinic, C2/c Mo Kα radiation, λ = 0.71073 Å
a = 21.542 (5) Å Cell parameters from 9928 reflections
b = 11.684 (5) Å θ = 2.8–28.3°
c = 15.126 (5) Å µ = 9.64 mm1
β = 118.172 (5)° T = 100 K
V = 3356 (2) Å3 Needle, colourless
Z = 8 0.34 × 0.12 × 0.09 mm

Data collection

Bruker APEXII CCD diffractometer 3688 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.031
φ and ω scans θmax = 28°, θmin = 3.2°
Absorption correction: multi-scan (SADABS; Bruker, 2008) h = −28→28
Tmin = 0.265, Tmax = 0.432 k = −15→15
28139 measured reflections l = −19→17
4032 independent reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.014 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.031 H atoms treated by a mixture of independent and constrained refinement
S = 1.05 w = 1/[σ2(Fo2) + (0.0112P)2 + 4.244P] where P = (Fo2 + 2Fc2)/3
4032 reflections (Δ/σ)max = 0.004
220 parameters Δρmax = 1.14 e Å3
2 restraints Δρmin = −0.60 e Å3

Special details

Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Re1 0.832406 (4) 0.266160 (7) 0.262052 (6) 0.01016 (3)
N1 0.82258 (9) 0.22093 (15) 0.39486 (13) 0.0105 (4)
C3 0.84911 (12) 0.3216 (2) 0.15505 (17) 0.0181 (5)
N3 0.91084 (10) 0.37861 (16) 0.37892 (14) 0.0130 (4)
C2 0.74889 (12) 0.35874 (19) 0.21078 (16) 0.0144 (5)
N2 0.92780 (9) 0.16093 (16) 0.33122 (13) 0.0124 (4)
C25 0.98776 (12) 0.21485 (19) 0.39603 (16) 0.0134 (4)
C21 0.92998 (12) 0.04661 (19) 0.31905 (16) 0.0152 (5)
H21 0.8888 0.0093 0.2746 0.018*
C22 0.99066 (12) −0.0171 (2) 0.36981 (18) 0.0204 (5)
H22 0.9908 −0.0954 0.3586 0.024*
C24 1.05014 (12) 0.1556 (2) 0.45125 (17) 0.0185 (5)
H24 1.0906 0.194 0.4966 0.022*
C23 1.05138 (12) 0.0382 (2) 0.43790 (18) 0.0210 (5)
H23 1.0927 −0.0029 0.4744 0.025*
C15 0.86452 (11) 0.27820 (18) 0.48059 (16) 0.0125 (4)
C11 0.78009 (11) 0.13816 (19) 0.39807 (16) 0.0139 (4)
H11 0.7496 0.1013 0.3388 0.017*
C12 0.78005 (12) 0.1058 (2) 0.48615 (17) 0.0164 (5)
H12 0.7504 0.048 0.486 0.02*
C16 0.90207 (12) 0.3815 (2) 0.47098 (16) 0.0157 (5)
H16A 0.8758 0.4496 0.4695 0.019*
H16B 0.9481 0.3865 0.5294 0.019*
O2 0.69748 (8) 0.41059 (14) 0.17770 (13) 0.0210 (4)
O1 0.74405 (8) 0.07008 (14) 0.12519 (12) 0.0212 (4)
O3 0.85788 (9) 0.35753 (17) 0.09110 (13) 0.0306 (4)
C1 0.77537 (11) 0.1458 (2) 0.17563 (16) 0.0147 (5)
C26 0.98272 (11) 0.34246 (19) 0.39980 (17) 0.0151 (5)
H26A 1.0168 0.3697 0.4656 0.018*
H26B 0.994 0.3767 0.3507 0.018*
C14 0.86774 (13) 0.2485 (2) 0.57138 (17) 0.0171 (5)
H14 0.8983 0.2868 0.6298 0.02*
C13 0.82505 (12) 0.1613 (2) 0.57449 (17) 0.0185 (5)
H13 0.8266 0.1404 0.6348 0.022*
Br1 0.899690 (12) 0.65619 (2) 0.320564 (16) 0.01760 (5)
O4 1 0.5200 (3) 0.25 0.0578 (10)
H3 0.9062 (16) 0.4465 (17) 0.356 (2) 0.053 (7)*
H4A 0.9723 (15) 0.567 (2) 0.268 (2) 0.053 (7)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Re1 0.00954 (5) 0.01156 (5) 0.00819 (4) 0.00126 (3) 0.00319 (3) 0.00068 (3)
N1 0.0101 (9) 0.0109 (9) 0.0103 (8) 0.0031 (7) 0.0046 (7) 0.0003 (7)
C3 0.0121 (11) 0.0238 (13) 0.0156 (11) 0.0040 (9) 0.0042 (9) 0.0025 (10)
N3 0.0124 (9) 0.0106 (9) 0.0138 (9) −0.0001 (8) 0.0045 (8) 0.0004 (7)
C2 0.0195 (12) 0.0123 (11) 0.0133 (11) −0.0026 (9) 0.0093 (9) 0.0000 (9)
N2 0.0114 (9) 0.0143 (10) 0.0125 (9) 0.0016 (7) 0.0063 (7) 0.0016 (7)
C25 0.0133 (11) 0.0162 (12) 0.0126 (10) 0.0005 (9) 0.0077 (9) 0.0004 (8)
C21 0.0143 (11) 0.0174 (12) 0.0154 (11) 0.0015 (9) 0.0082 (9) −0.0008 (9)
C22 0.0226 (13) 0.0181 (13) 0.0221 (12) 0.0049 (10) 0.0119 (11) 0.0009 (10)
C24 0.0133 (11) 0.0246 (13) 0.0163 (11) 0.0016 (10) 0.0060 (9) 0.0001 (10)
C23 0.0161 (12) 0.0261 (14) 0.0196 (12) 0.0105 (10) 0.0073 (10) 0.0037 (10)
C15 0.0100 (10) 0.0127 (11) 0.0137 (10) 0.0038 (8) 0.0049 (9) −0.0008 (8)
C11 0.0134 (11) 0.0112 (11) 0.0161 (11) 0.0040 (9) 0.0061 (9) 0.0009 (9)
C12 0.0176 (12) 0.0145 (12) 0.0216 (12) 0.0044 (9) 0.0129 (10) 0.0052 (9)
C16 0.0150 (11) 0.0167 (12) 0.0129 (10) −0.0014 (9) 0.0044 (9) −0.0046 (9)
O2 0.0154 (9) 0.0152 (9) 0.0295 (9) 0.0036 (7) 0.0081 (7) 0.0045 (7)
O1 0.0191 (9) 0.0223 (9) 0.0174 (8) −0.0003 (7) 0.0047 (7) −0.0083 (7)
O3 0.0287 (10) 0.0461 (12) 0.0224 (9) 0.0075 (9) 0.0166 (8) 0.0134 (9)
C1 0.0124 (11) 0.0191 (12) 0.0120 (10) 0.0050 (9) 0.0053 (9) 0.0023 (9)
C26 0.0100 (11) 0.0169 (12) 0.0171 (11) −0.0013 (9) 0.0053 (9) −0.0004 (9)
C14 0.0182 (12) 0.0196 (13) 0.0121 (11) 0.0068 (9) 0.0061 (10) −0.0014 (9)
C13 0.0197 (12) 0.0205 (13) 0.0179 (12) 0.0096 (10) 0.0110 (10) 0.0071 (9)
Br1 0.01889 (12) 0.01679 (12) 0.01454 (11) 0.00078 (9) 0.00578 (9) 0.00349 (8)
O4 0.091 (3) 0.0332 (19) 0.090 (3) 0 0.076 (2) 0

Geometric parameters (Å, º)

Re1—C1 1.918 (2) C22—H22 0.93
Re1—C2 1.921 (2) C24—C23 1.388 (3)
Re1—C3 1.928 (2) C24—H24 0.93
Re1—N1 2.1819 (19) C23—H23 0.93
Re1—N2 2.1906 (18) C15—C14 1.386 (3)
Re1—N3 2.2104 (19) C15—C16 1.498 (3)
N1—C11 1.348 (3) C11—C12 1.385 (3)
N1—C15 1.356 (3) C11—H11 0.93
C3—O3 1.149 (3) C12—C13 1.386 (3)
N3—C26 1.488 (3) C12—H12 0.93
N3—C16 1.491 (3) C16—H16A 0.97
N3—H3 0.850 (18) C16—H16B 0.97
C2—O2 1.149 (3) O1—C1 1.155 (3)
N2—C21 1.352 (3) C26—H26A 0.97
N2—C25 1.353 (3) C26—H26B 0.97
C25—C24 1.387 (3) C14—C13 1.389 (3)
C25—C26 1.498 (3) C14—H14 0.93
C21—C22 1.380 (3) C13—H13 0.93
C21—H21 0.93 O4—H4A 0.939 (17)
C22—C23 1.385 (3)
C1—Re1—C2 87.77 (10) C21—C22—H22 120.8
C1—Re1—C3 89.29 (10) C23—C22—H22 120.8
C2—Re1—C3 88.99 (9) C25—C24—C23 119.0 (2)
C1—Re1—N1 98.08 (8) C25—C24—H24 120.5
C2—Re1—N1 91.64 (8) C23—C24—H24 120.5
C3—Re1—N1 172.62 (8) C22—C23—C24 119.6 (2)
C1—Re1—N2 93.94 (8) C22—C23—H23 120.2
C2—Re1—N2 175.80 (8) C24—C23—H23 120.2
C3—Re1—N2 94.86 (8) N1—C15—C14 121.6 (2)
N1—Re1—N2 84.33 (7) N1—C15—C16 116.82 (19)
C1—Re1—N3 169.31 (8) C14—C15—C16 121.4 (2)
C2—Re1—N3 101.82 (9) N1—C11—C12 122.6 (2)
C3—Re1—N3 95.54 (9) N1—C11—H11 118.7
N1—Re1—N3 77.14 (7) C12—C11—H11 118.7
N2—Re1—N3 76.18 (7) C11—C12—C13 118.8 (2)
C11—N1—C15 118.46 (19) C11—C12—H12 120.6
C11—N1—Re1 124.72 (14) C13—C12—H12 120.6
C15—N1—Re1 116.78 (14) N3—C16—C15 112.61 (18)
O3—C3—Re1 177.9 (2) N3—C16—H16A 109.1
C26—N3—C16 112.72 (17) C15—C16—H16A 109.1
C26—N3—Re1 109.09 (13) N3—C16—H16B 109.1
C16—N3—Re1 111.98 (13) C15—C16—H16B 109.1
C26—N3—H3 105 (2) H16A—C16—H16B 107.8
C16—N3—H3 108 (2) O1—C1—Re1 176.56 (19)
Re1—N3—H3 109 (2) N3—C26—C25 111.18 (18)
O2—C2—Re1 177.3 (2) N3—C26—H26A 109.4
C21—N2—C25 118.42 (19) C25—C26—H26A 109.4
C21—N2—Re1 125.07 (15) N3—C26—H26B 109.4
C25—N2—Re1 116.37 (15) C25—C26—H26B 109.4
N2—C25—C24 121.8 (2) H26A—C26—H26B 108
N2—C25—C26 115.44 (19) C15—C14—C13 119.5 (2)
C24—C25—C26 122.7 (2) C15—C14—H14 120.2
N2—C21—C22 122.8 (2) C13—C14—H14 120.2
N2—C21—H21 118.6 C12—C13—C14 118.9 (2)
C22—C21—H21 118.6 C12—C13—H13 120.5
C21—C22—C23 118.4 (2) C14—C13—H13 120.5

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
N3—H3···Br1 0.85 (2) 2.50 (2) 3.340 (2) 170 (3)
O4—H4A···Br1 0.94 (2) 2.31 (2) 3.2429 (18) 171 (3)
C11—H11···O2i 0.93 2.57 3.023 (3) 111
C12—H12···O1ii 0.93 2.57 3.285 (3) 134
C21—H21···O2i 0.93 2.56 3.193 (3) 125
C26—H26A···Br1iii 0.97 2.88 3.767 (3) 153
C26—H26B···O4 0.97 2.31 3.221 (3) 156

Symmetry codes: (i) −x+3/2, y−1/2, −z+1/2; (ii) x, −y, z+1/2; (iii) −x+2, −y+1, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: RU2033).

References

  1. Alberto, R., Schibli, R. & Schubiger, P. A. (1996). Polyhedron, 15, 1079–1089.
  2. Banerjee, S. R., Babich, J. W. & Zubieta, J. (2004). Inorg. Chem. Commun. 7, 481–484.
  3. Banerjee, S. R., Babich, J. W. & Zubieta, J. (2006). Inorg. Chim. Acta, 359, 1603–1612.
  4. Banerjee, S. R., Murali, K. L., Lazarova, N., Wei, L., Valliant, J. F., Stephenson, K. A., Babich, J. W., Maresca, K. P. & Zubieta, J. (2002). Inorg. Chem. 41, 6417–6425. [DOI] [PubMed]
  5. Banerjee, S. R. & Zubieta, J. (2005). Acta Cryst. C61, m275–m277. [DOI] [PubMed]
  6. Brandenburg, K. & Putz, H. (2005). DIAMOND Crystal Impact GbR, Bonn, Germany.
  7. Bruker (2008). APEX2, SAINT and SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
  8. Farrugia, L. J. (1999). J. Appl. Cryst. 32, 837–838.
  9. Kunz, P. C., Bruckmann, N. E. & Spingler, B. (2007). Eur. J. Inorg. Chem. 3, 394–399.
  10. Moore, A. L., Bucar, A.-K., MacGillivray, L. R. & Benny, P. D. (2010). Dalton Trans. 39, 1926–1928. [DOI] [PubMed]
  11. Raszeja, L., Maghnouj, A., Hahn, S. & Metzler-Nolte, N. (2011). ChemBioChem, 12, 371–376. [DOI] [PubMed]
  12. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  13. Wei, L., Babich, J. W., Ouellette, W. & Zubieta, J. (2006). Inorg. Chem. 45, 3057–3066. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812019654/ru2033sup1.cif

e-68-0m741-sup1.cif (23.9KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812019654/ru2033Isup2.hkl

e-68-0m741-Isup2.hkl (193.7KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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