Abstract
The title compound, fac-[Re(C12H12N3)(CO)3]Br·0.5H2O, crystallizes with a cationic rhenium(I) unit, a bromide ion and half a water molecule, situated on a twofold rotation axis, in the asymmetric unit. The ReI atom is facially surrounded by three carbonyl ligands and a tridentate bis(pyridin-2-ylmethyl)amine ligand in a distorted octahedral environment. N—H⋯Br, O—H⋯Br, C—H⋯O and C—H⋯Br hydrogen bonds are present in the crystal structure and π–π stacking is also observed [centroid–centroid distances = 3.669 (1) Å and 4.054 (1) Å], giving rise to a three-dimentional network. The molecules pack in a head-to-head fashion along the ac plane.
Related literature
For the synthesis of the fac-ReI-tricarbonyl synthon, see: Alberto et al. (1996 ▶). For a similar structure, see: Banerjee et al. (2002 ▶). For related structures, see: Raszeja et al. (2011 ▶); Banerjee & Zubieta (2005 ▶); Banerjee et al. (2004 ▶, 2006 ▶); Kunz et al. (2007 ▶); Wei et al. (2006 ▶); Moore et al. (2010 ▶).
Experimental
Crystal data
[Re(C12H12N3)(CO)3]Br·0.5H2O
M r = 558.4
Monoclinic,
a = 21.542 (5) Å
b = 11.684 (5) Å
c = 15.126 (5) Å
β = 118.172 (5)°
V = 3356 (2) Å3
Z = 8
Mo Kα radiation
μ = 9.64 mm−1
T = 100 K
0.34 × 0.12 × 0.09 mm
Data collection
Bruker APEXII CCD diffractometer
Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.265, T max = 0.432
28139 measured reflections
4032 independent reflections
3688 reflections with I > 2σ(I)
R int = 0.031
Refinement
R[F 2 > 2σ(F 2)] = 0.014
wR(F 2) = 0.031
S = 1.05
4032 reflections
220 parameters
2 restraints
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 1.14 e Å−3
Δρmin = −0.60 e Å−3
Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT-Plus (Bruker, 2008 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, 2005 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶).
Supplementary Material
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812019654/ru2033sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812019654/ru2033Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Selected bond lengths (Å).
| Re1—C1 | 1.918 (2) |
| Re1—C2 | 1.921 (2) |
| Re1—C3 | 1.928 (2) |
| Re1—N1 | 2.1819 (19) |
| Re1—N2 | 2.1906 (18) |
| Re1—N3 | 2.2104 (19) |
Table 2. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N3—H3⋯Br1 | 0.85 (2) | 2.50 (2) | 3.340 (2) | 170 (3) |
| O4—H4A⋯Br1 | 0.94 (2) | 2.31 (2) | 3.2429 (18) | 171 (3) |
| C11—H11⋯O2i | 0.93 | 2.57 | 3.023 (3) | 111 |
| C12—H12⋯O1ii | 0.93 | 2.57 | 3.285 (3) | 134 |
| C21—H21⋯O2i | 0.93 | 2.56 | 3.193 (3) | 125 |
| C26—H26A⋯Br1iii | 0.97 | 2.88 | 3.767 (3) | 153 |
| C26—H26B⋯O4 | 0.97 | 2.31 | 3.221 (3) | 156 |
Symmetry codes: (i)
; (ii)
; (iii)
.
Acknowledgments
We would like to thank the University of the Free State, the Chemistry Department, the NRF and Sasol Ltd for financial support.
supplementary crystallographic information
Comment
N,N-Bis(2-pyridylmethyl)2aminetricarbonylrhenium(I)bromidehydrate crystallized in the monoclinc spacegroup with the cationic fac- [Re(CO)3({2-pyridyl-CH2}2NH)], bromide anion and half a water molecule in the assymetric unit. The tridentate ligand, N,N-(2-pyridylmethyl)2amine, coordinate facially to the ReI core and the other three positions are occupied by carbonyl ligands. The oxygen atom in the water molecule occupies a special position on a mirror plane (Wyckoff position 4e, site symmetry 2). Seven hydrogen bonds (N—H···Br, O—H···Br, C—H···O, C—H···Br) are observed in the crystal structure. Some weak π–π stacking, with a centroid-to-centroid distance of 3.669 (1) Å and 4.054 (1) Å, is also observed between the different pyridine rings of the ligand system. These interactions complete a three dimensional polymericnetwork formed between the ReI units. Overall, the bond distances and angles compare well with the similar structure reported by Banerjee et al. (2002), N,N-bis(2-pyridylmethyl)2aminetricarbonylrhenium(I)bromide, that crystallized in the tetragonal P41 spacegroup. The three Rhenium to carbonyl distances ranging from 1.918 (2) Å to 1.928 (2) Å compare well to similar structures (Raszeja et al. (2011), Banerjee et al. (2004), Kunz et al. (2007), Wei et al. (2006), Banerjee et al. (2005), Banerjee et al. (2006), Moore et al. (2010)) and also to the N,N-Bis(2-pyridylmethyl)2aminetricarbonylrhenium(I)bromide structure reported by Banerjee et al. (2002) of 1.901 (6) Å to 1.926 (7) Å. The Re-amine distance of 2.210 (2) Å and the Re-pyridine distances of 2.182 (2) Å and 2.191 (2) Å are slightly longer than the Re-Amine distance of 2.187 (4) Å and the Re-pyridine distances of 2.177 (5) Å and 2.183 (5) Å reported by Banerjee et al. (2002).
Experimental
[NEt4]2[Re(CO)3Br3] (75 mg, 0.097 mmol), as prepared by Alberto et al. (1996), was dissolved in 20 ml of water, acidified with HNO3 to pH 2.2. Silver nitrate (50 mg, 0.291 mmol) was added to the solution and stirred for 24 h at room temperature. The grey silver bromide precipitate was filtered off, N,N-bis(2-pyridylmethyl)amine (19.4 mg, 0.100 mmol) was added to the filtrate and stirred overnight at room temperature. The colourless crystals were grown from the filtrate by slow evaporation.
Refinement
Aromatic H atoms were positioned geometrically and allowed to ride on their parent atoms, with Uiso(H) = 1.2Ueq(parent) of the parent atom with a C—H distance of 0.93. The methene H atoms were placed in geometrically idealized positions and constrained to ride on its parent atoms with Uiso(H) = 1.2Ueq(C) and at a distance of 0.97 Å. The N– bound H atom was placed from the electron density map.
Figures
Fig. 1.
Representation of the title compound, showing the numbering scheme and displacement ellipsoids (50% probability).
Fig. 2.
Packing of the title compound in the unit cell and the observed π-π stacking in the crystal structure, indicated by dashed lines (hydrogen atoms omitted for clarity).
Crystal data
| [Re(C12H12N3)(CO)3]Br·0.5H2O | F(000) = 2104 |
| Mr = 558.4 | Dx = 2.21 Mg m−3 |
| Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
| a = 21.542 (5) Å | Cell parameters from 9928 reflections |
| b = 11.684 (5) Å | θ = 2.8–28.3° |
| c = 15.126 (5) Å | µ = 9.64 mm−1 |
| β = 118.172 (5)° | T = 100 K |
| V = 3356 (2) Å3 | Needle, colourless |
| Z = 8 | 0.34 × 0.12 × 0.09 mm |
Data collection
| Bruker APEXII CCD diffractometer | 3688 reflections with I > 2σ(I) |
| Graphite monochromator | Rint = 0.031 |
| φ and ω scans | θmax = 28°, θmin = 3.2° |
| Absorption correction: multi-scan (SADABS; Bruker, 2008) | h = −28→28 |
| Tmin = 0.265, Tmax = 0.432 | k = −15→15 |
| 28139 measured reflections | l = −19→17 |
| 4032 independent reflections |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.014 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.031 | H atoms treated by a mixture of independent and constrained refinement |
| S = 1.05 | w = 1/[σ2(Fo2) + (0.0112P)2 + 4.244P] where P = (Fo2 + 2Fc2)/3 |
| 4032 reflections | (Δ/σ)max = 0.004 |
| 220 parameters | Δρmax = 1.14 e Å−3 |
| 2 restraints | Δρmin = −0.60 e Å−3 |
Special details
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Re1 | 0.832406 (4) | 0.266160 (7) | 0.262052 (6) | 0.01016 (3) | |
| N1 | 0.82258 (9) | 0.22093 (15) | 0.39486 (13) | 0.0105 (4) | |
| C3 | 0.84911 (12) | 0.3216 (2) | 0.15505 (17) | 0.0181 (5) | |
| N3 | 0.91084 (10) | 0.37861 (16) | 0.37892 (14) | 0.0130 (4) | |
| C2 | 0.74889 (12) | 0.35874 (19) | 0.21078 (16) | 0.0144 (5) | |
| N2 | 0.92780 (9) | 0.16093 (16) | 0.33122 (13) | 0.0124 (4) | |
| C25 | 0.98776 (12) | 0.21485 (19) | 0.39603 (16) | 0.0134 (4) | |
| C21 | 0.92998 (12) | 0.04661 (19) | 0.31905 (16) | 0.0152 (5) | |
| H21 | 0.8888 | 0.0093 | 0.2746 | 0.018* | |
| C22 | 0.99066 (12) | −0.0171 (2) | 0.36981 (18) | 0.0204 (5) | |
| H22 | 0.9908 | −0.0954 | 0.3586 | 0.024* | |
| C24 | 1.05014 (12) | 0.1556 (2) | 0.45125 (17) | 0.0185 (5) | |
| H24 | 1.0906 | 0.194 | 0.4966 | 0.022* | |
| C23 | 1.05138 (12) | 0.0382 (2) | 0.43790 (18) | 0.0210 (5) | |
| H23 | 1.0927 | −0.0029 | 0.4744 | 0.025* | |
| C15 | 0.86452 (11) | 0.27820 (18) | 0.48059 (16) | 0.0125 (4) | |
| C11 | 0.78009 (11) | 0.13816 (19) | 0.39807 (16) | 0.0139 (4) | |
| H11 | 0.7496 | 0.1013 | 0.3388 | 0.017* | |
| C12 | 0.78005 (12) | 0.1058 (2) | 0.48615 (17) | 0.0164 (5) | |
| H12 | 0.7504 | 0.048 | 0.486 | 0.02* | |
| C16 | 0.90207 (12) | 0.3815 (2) | 0.47098 (16) | 0.0157 (5) | |
| H16A | 0.8758 | 0.4496 | 0.4695 | 0.019* | |
| H16B | 0.9481 | 0.3865 | 0.5294 | 0.019* | |
| O2 | 0.69748 (8) | 0.41059 (14) | 0.17770 (13) | 0.0210 (4) | |
| O1 | 0.74405 (8) | 0.07008 (14) | 0.12519 (12) | 0.0212 (4) | |
| O3 | 0.85788 (9) | 0.35753 (17) | 0.09110 (13) | 0.0306 (4) | |
| C1 | 0.77537 (11) | 0.1458 (2) | 0.17563 (16) | 0.0147 (5) | |
| C26 | 0.98272 (11) | 0.34246 (19) | 0.39980 (17) | 0.0151 (5) | |
| H26A | 1.0168 | 0.3697 | 0.4656 | 0.018* | |
| H26B | 0.994 | 0.3767 | 0.3507 | 0.018* | |
| C14 | 0.86774 (13) | 0.2485 (2) | 0.57138 (17) | 0.0171 (5) | |
| H14 | 0.8983 | 0.2868 | 0.6298 | 0.02* | |
| C13 | 0.82505 (12) | 0.1613 (2) | 0.57449 (17) | 0.0185 (5) | |
| H13 | 0.8266 | 0.1404 | 0.6348 | 0.022* | |
| Br1 | 0.899690 (12) | 0.65619 (2) | 0.320564 (16) | 0.01760 (5) | |
| O4 | 1 | 0.5200 (3) | 0.25 | 0.0578 (10) | |
| H3 | 0.9062 (16) | 0.4465 (17) | 0.356 (2) | 0.053 (7)* | |
| H4A | 0.9723 (15) | 0.567 (2) | 0.268 (2) | 0.053 (7)* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Re1 | 0.00954 (5) | 0.01156 (5) | 0.00819 (4) | 0.00126 (3) | 0.00319 (3) | 0.00068 (3) |
| N1 | 0.0101 (9) | 0.0109 (9) | 0.0103 (8) | 0.0031 (7) | 0.0046 (7) | 0.0003 (7) |
| C3 | 0.0121 (11) | 0.0238 (13) | 0.0156 (11) | 0.0040 (9) | 0.0042 (9) | 0.0025 (10) |
| N3 | 0.0124 (9) | 0.0106 (9) | 0.0138 (9) | −0.0001 (8) | 0.0045 (8) | 0.0004 (7) |
| C2 | 0.0195 (12) | 0.0123 (11) | 0.0133 (11) | −0.0026 (9) | 0.0093 (9) | 0.0000 (9) |
| N2 | 0.0114 (9) | 0.0143 (10) | 0.0125 (9) | 0.0016 (7) | 0.0063 (7) | 0.0016 (7) |
| C25 | 0.0133 (11) | 0.0162 (12) | 0.0126 (10) | 0.0005 (9) | 0.0077 (9) | 0.0004 (8) |
| C21 | 0.0143 (11) | 0.0174 (12) | 0.0154 (11) | 0.0015 (9) | 0.0082 (9) | −0.0008 (9) |
| C22 | 0.0226 (13) | 0.0181 (13) | 0.0221 (12) | 0.0049 (10) | 0.0119 (11) | 0.0009 (10) |
| C24 | 0.0133 (11) | 0.0246 (13) | 0.0163 (11) | 0.0016 (10) | 0.0060 (9) | 0.0001 (10) |
| C23 | 0.0161 (12) | 0.0261 (14) | 0.0196 (12) | 0.0105 (10) | 0.0073 (10) | 0.0037 (10) |
| C15 | 0.0100 (10) | 0.0127 (11) | 0.0137 (10) | 0.0038 (8) | 0.0049 (9) | −0.0008 (8) |
| C11 | 0.0134 (11) | 0.0112 (11) | 0.0161 (11) | 0.0040 (9) | 0.0061 (9) | 0.0009 (9) |
| C12 | 0.0176 (12) | 0.0145 (12) | 0.0216 (12) | 0.0044 (9) | 0.0129 (10) | 0.0052 (9) |
| C16 | 0.0150 (11) | 0.0167 (12) | 0.0129 (10) | −0.0014 (9) | 0.0044 (9) | −0.0046 (9) |
| O2 | 0.0154 (9) | 0.0152 (9) | 0.0295 (9) | 0.0036 (7) | 0.0081 (7) | 0.0045 (7) |
| O1 | 0.0191 (9) | 0.0223 (9) | 0.0174 (8) | −0.0003 (7) | 0.0047 (7) | −0.0083 (7) |
| O3 | 0.0287 (10) | 0.0461 (12) | 0.0224 (9) | 0.0075 (9) | 0.0166 (8) | 0.0134 (9) |
| C1 | 0.0124 (11) | 0.0191 (12) | 0.0120 (10) | 0.0050 (9) | 0.0053 (9) | 0.0023 (9) |
| C26 | 0.0100 (11) | 0.0169 (12) | 0.0171 (11) | −0.0013 (9) | 0.0053 (9) | −0.0004 (9) |
| C14 | 0.0182 (12) | 0.0196 (13) | 0.0121 (11) | 0.0068 (9) | 0.0061 (10) | −0.0014 (9) |
| C13 | 0.0197 (12) | 0.0205 (13) | 0.0179 (12) | 0.0096 (10) | 0.0110 (10) | 0.0071 (9) |
| Br1 | 0.01889 (12) | 0.01679 (12) | 0.01454 (11) | 0.00078 (9) | 0.00578 (9) | 0.00349 (8) |
| O4 | 0.091 (3) | 0.0332 (19) | 0.090 (3) | 0 | 0.076 (2) | 0 |
Geometric parameters (Å, º)
| Re1—C1 | 1.918 (2) | C22—H22 | 0.93 |
| Re1—C2 | 1.921 (2) | C24—C23 | 1.388 (3) |
| Re1—C3 | 1.928 (2) | C24—H24 | 0.93 |
| Re1—N1 | 2.1819 (19) | C23—H23 | 0.93 |
| Re1—N2 | 2.1906 (18) | C15—C14 | 1.386 (3) |
| Re1—N3 | 2.2104 (19) | C15—C16 | 1.498 (3) |
| N1—C11 | 1.348 (3) | C11—C12 | 1.385 (3) |
| N1—C15 | 1.356 (3) | C11—H11 | 0.93 |
| C3—O3 | 1.149 (3) | C12—C13 | 1.386 (3) |
| N3—C26 | 1.488 (3) | C12—H12 | 0.93 |
| N3—C16 | 1.491 (3) | C16—H16A | 0.97 |
| N3—H3 | 0.850 (18) | C16—H16B | 0.97 |
| C2—O2 | 1.149 (3) | O1—C1 | 1.155 (3) |
| N2—C21 | 1.352 (3) | C26—H26A | 0.97 |
| N2—C25 | 1.353 (3) | C26—H26B | 0.97 |
| C25—C24 | 1.387 (3) | C14—C13 | 1.389 (3) |
| C25—C26 | 1.498 (3) | C14—H14 | 0.93 |
| C21—C22 | 1.380 (3) | C13—H13 | 0.93 |
| C21—H21 | 0.93 | O4—H4A | 0.939 (17) |
| C22—C23 | 1.385 (3) | ||
| C1—Re1—C2 | 87.77 (10) | C21—C22—H22 | 120.8 |
| C1—Re1—C3 | 89.29 (10) | C23—C22—H22 | 120.8 |
| C2—Re1—C3 | 88.99 (9) | C25—C24—C23 | 119.0 (2) |
| C1—Re1—N1 | 98.08 (8) | C25—C24—H24 | 120.5 |
| C2—Re1—N1 | 91.64 (8) | C23—C24—H24 | 120.5 |
| C3—Re1—N1 | 172.62 (8) | C22—C23—C24 | 119.6 (2) |
| C1—Re1—N2 | 93.94 (8) | C22—C23—H23 | 120.2 |
| C2—Re1—N2 | 175.80 (8) | C24—C23—H23 | 120.2 |
| C3—Re1—N2 | 94.86 (8) | N1—C15—C14 | 121.6 (2) |
| N1—Re1—N2 | 84.33 (7) | N1—C15—C16 | 116.82 (19) |
| C1—Re1—N3 | 169.31 (8) | C14—C15—C16 | 121.4 (2) |
| C2—Re1—N3 | 101.82 (9) | N1—C11—C12 | 122.6 (2) |
| C3—Re1—N3 | 95.54 (9) | N1—C11—H11 | 118.7 |
| N1—Re1—N3 | 77.14 (7) | C12—C11—H11 | 118.7 |
| N2—Re1—N3 | 76.18 (7) | C11—C12—C13 | 118.8 (2) |
| C11—N1—C15 | 118.46 (19) | C11—C12—H12 | 120.6 |
| C11—N1—Re1 | 124.72 (14) | C13—C12—H12 | 120.6 |
| C15—N1—Re1 | 116.78 (14) | N3—C16—C15 | 112.61 (18) |
| O3—C3—Re1 | 177.9 (2) | N3—C16—H16A | 109.1 |
| C26—N3—C16 | 112.72 (17) | C15—C16—H16A | 109.1 |
| C26—N3—Re1 | 109.09 (13) | N3—C16—H16B | 109.1 |
| C16—N3—Re1 | 111.98 (13) | C15—C16—H16B | 109.1 |
| C26—N3—H3 | 105 (2) | H16A—C16—H16B | 107.8 |
| C16—N3—H3 | 108 (2) | O1—C1—Re1 | 176.56 (19) |
| Re1—N3—H3 | 109 (2) | N3—C26—C25 | 111.18 (18) |
| O2—C2—Re1 | 177.3 (2) | N3—C26—H26A | 109.4 |
| C21—N2—C25 | 118.42 (19) | C25—C26—H26A | 109.4 |
| C21—N2—Re1 | 125.07 (15) | N3—C26—H26B | 109.4 |
| C25—N2—Re1 | 116.37 (15) | C25—C26—H26B | 109.4 |
| N2—C25—C24 | 121.8 (2) | H26A—C26—H26B | 108 |
| N2—C25—C26 | 115.44 (19) | C15—C14—C13 | 119.5 (2) |
| C24—C25—C26 | 122.7 (2) | C15—C14—H14 | 120.2 |
| N2—C21—C22 | 122.8 (2) | C13—C14—H14 | 120.2 |
| N2—C21—H21 | 118.6 | C12—C13—C14 | 118.9 (2) |
| C22—C21—H21 | 118.6 | C12—C13—H13 | 120.5 |
| C21—C22—C23 | 118.4 (2) | C14—C13—H13 | 120.5 |
Hydrogen-bond geometry (Å, º)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N3—H3···Br1 | 0.85 (2) | 2.50 (2) | 3.340 (2) | 170 (3) |
| O4—H4A···Br1 | 0.94 (2) | 2.31 (2) | 3.2429 (18) | 171 (3) |
| C11—H11···O2i | 0.93 | 2.57 | 3.023 (3) | 111 |
| C12—H12···O1ii | 0.93 | 2.57 | 3.285 (3) | 134 |
| C21—H21···O2i | 0.93 | 2.56 | 3.193 (3) | 125 |
| C26—H26A···Br1iii | 0.97 | 2.88 | 3.767 (3) | 153 |
| C26—H26B···O4 | 0.97 | 2.31 | 3.221 (3) | 156 |
Symmetry codes: (i) −x+3/2, y−1/2, −z+1/2; (ii) x, −y, z+1/2; (iii) −x+2, −y+1, −z+1.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: RU2033).
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812019654/ru2033sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812019654/ru2033Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


