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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 May 2;68(Pt 6):o1597. doi: 10.1107/S1600536812018806

1-(Adamantan-1-ylcarbon­yl)-3-(2,6-difluoro-4-hy­droxy­phen­yl)thio­urea

Shaaban K Mohamed a, Abdel-Aal M Jaber b, Sohail Saeed c,*, Khuram Shahzad Ahmad c, Wing-Tak Wong d
PMCID: PMC3379207  PMID: 22719405

Abstract

In the title mol­ecule, C18H20F2N2O2S, the 2,6-difluoro-4-hy­droxy­phenyl ring and the carbonyl­thio­urea group are each essentially planar, with maximum deviations of atoms from their mean planes of 0.0113 (14) and 0.1017 (15) Å, respectively; the dihedral angle between these two planes is 71.03 (6)°. An intra­molecular N—H⋯O hydrogen bond occurs. In the crystal, N—H⋯O and O—H⋯S hydrogen bonds connect the mol­ecules into chains running diagonally across the bc plane. C—H⋯S and C—H⋯F contacts are also observed.

Related literature  

For background studies of thio­urea derivatives, see: Saeed et al. (2011). For a related structure, see: Saeed et al. (2010).graphic file with name e-68-o1597-scheme1.jpg

Experimental  

Crystal data  

  • C18H20F2N2O2S

  • M r = 366.42

  • Triclinic, Inline graphic

  • a = 7.3985 (9) Å

  • b = 10.4953 (13) Å

  • c = 12.4094 (15) Å

  • α = 65.554 (2)°

  • β = 79.372 (2)°

  • γ = 89.766 (2)°

  • V = 859.34 (18) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.22 mm−1

  • T = 296 K

  • 0.38 × 0.36 × 0.08 mm

Data collection  

  • Bruker SMART 1000 CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 2004) T min = 0.920, T max = 0.982

  • 4824 measured reflections

  • 2976 independent reflections

  • 2399 reflections with I > 2σ(I)

  • R int = 0.010

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.038

  • wR(F 2) = 0.100

  • S = 1.04

  • 2976 reflections

  • 238 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.17 e Å−3

  • Δρmin = −0.18 e Å−3

Data collection: SMART (Bruker, 1998); cell refinement: SAINT (Bruker, 2006); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812018806/pv2537sup1.cif

e-68-o1597-sup1.cif (25.5KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812018806/pv2537Isup2.hkl

e-68-o1597-Isup2.hkl (146.1KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812018806/pv2537Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1⋯O2 0.79 (2) 2.09 (2) 2.692 (2) 133 (2)
N1—H1⋯O2i 0.79 (2) 2.52 (2) 3.185 (3) 142 (2)
O1—H1O⋯S1ii 0.87 (3) 2.36 (3) 3.212 (2) 169 (3)
C14—H14A⋯S1iii 0.97 2.84 3.761 (2) 159
C14—H14B⋯F1iv 0.97 2.45 3.354 (3) 155

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic.

Acknowledgments

SS is thankful to the University of Hong Kong for providing the facility for crystallographic studies.

supplementary crystallographic information

Comment

In continuation of our studies on structural chemistry of N,N'-disubstituted thiourea (Saeed, et al., 2011), the structure of the title compound is described in this article.

In the title molecule (Fig. 1), the 2,6-difluoro-4-hydroxy-phenyl ring (C1–C6/O1/F1/F2) and the carbonyl thiourea group (S1/N1/N2/O2/C7/C8) are individually more or less planar, with maximum deviations of atoms from their mean planes being 0.0113 (14) Å for O1 and 0.1017 (15) Å for N2, respectively; the dihedral angle between these two planes is 71.03 (6)°.

Hydrogen bonding interactions were observed in the crystal lattice which connect the molecules into 1-D chains running diagonally across the b-c-plane (Table 1 and Fig. 2).

Experimental

A mixture of adamantane-1-carbonyl chloride (199 mg, 1 mmol), 4-amino-3,5-difluorophenol (145 mg, 1 mmol) and potassium thiocyanate (100 mg) was heated for 30 minutes in ethanol (5 ml) at 351 K. The reaction mixture was left overnight to cool down at room temperature to afford a solid product which was filtered off, washed and recrystallized from ethanol. Colorless crystals suitable for X-ray crystallographic studies were collected and dried (yield = 82%; m. p. = 455-456 K).

Refinement

The C-bound H atoms were placed at geometrically idealized positions with C—H = 0.93, 0.97 and 0.98 Å for phenyl, methylene and methine H-atoms, respectively, and were refined using riding model with Uiso(H) = 1.2Ueq(C). The N and O-bound H atoms were located from a difference Fourier map and were refined isotropically.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound with the atom numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. H atoms are presented as small spheres of arbitrary radius.

Fig. 2.

Fig. 2.

A view of the N—H···O and O—H···S hydrogen bonds (dotted lines) in the crystal structure of the title compound. H atoms non-participating in hydrogen-bonding were omitted for clarity.

Crystal data

C18H20F2N2O2S Z = 2
Mr = 366.42 F(000) = 384
Triclinic, P1 Dx = 1.416 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 7.3985 (9) Å Cell parameters from 4824 reflections
b = 10.4953 (13) Å θ = 2.8–25.0°
c = 12.4094 (15) Å µ = 0.22 mm1
α = 65.554 (2)° T = 296 K
β = 79.372 (2)° Plate, colourless
γ = 89.766 (2)° 0.38 × 0.36 × 0.08 mm
V = 859.34 (18) Å3

Data collection

Bruker SMART 1000 CCD diffractometer 2976 independent reflections
Radiation source: fine-focus sealed tube 2399 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.010
ω & φ scans θmax = 25.0°, θmin = 2.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004) h = −8→8
Tmin = 0.920, Tmax = 0.982 k = −9→12
4824 measured reflections l = −14→14

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.100 H atoms treated by a mixture of independent and constrained refinement
S = 1.04 w = 1/[σ2(Fo2) + (0.0409P)2 + 0.3498P] where P = (Fo2 + 2Fc2)/3
2976 reflections (Δ/σ)max < 0.001
238 parameters Δρmax = 0.17 e Å3
0 restraints Δρmin = −0.18 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
S1 0.98449 (8) −0.02031 (6) 0.68281 (5) 0.05290 (18)
F1 1.3675 (2) 0.16253 (18) 0.66290 (12) 0.0801 (5)
F2 0.81301 (19) 0.25665 (16) 0.85556 (13) 0.0769 (4)
O1 1.2972 (3) 0.08462 (19) 1.06720 (15) 0.0659 (5)
H1O 1.212 (4) 0.076 (3) 1.128 (3) 0.095 (11)*
O2 0.8566 (3) 0.42734 (17) 0.47025 (18) 0.0918 (7)
N1 1.0107 (3) 0.2470 (2) 0.64901 (16) 0.0533 (5)
H1 0.993 (3) 0.327 (3) 0.613 (2) 0.061 (7)*
N2 0.8692 (3) 0.19619 (19) 0.51851 (15) 0.0481 (4)
H2 0.838 (3) 0.132 (2) 0.5017 (18) 0.046 (6)*
C1 1.0863 (3) 0.2106 (2) 0.75458 (17) 0.0465 (5)
C2 1.2611 (3) 0.1657 (2) 0.76211 (18) 0.0508 (5)
C3 1.3321 (3) 0.1234 (2) 0.86477 (18) 0.0521 (5)
H3 1.4501 0.0926 0.8662 0.063*
C4 1.2233 (3) 0.1278 (2) 0.96622 (17) 0.0467 (5)
C5 1.0489 (3) 0.1751 (2) 0.96344 (18) 0.0491 (5)
H5 0.9768 0.1803 1.0311 0.059*
C6 0.9851 (3) 0.2141 (2) 0.85798 (19) 0.0484 (5)
C7 0.9559 (3) 0.1514 (2) 0.61553 (16) 0.0433 (5)
C8 0.8121 (3) 0.3264 (2) 0.45461 (19) 0.0517 (5)
C9 0.6926 (3) 0.3338 (2) 0.36480 (16) 0.0417 (4)
C10 0.5468 (3) 0.4380 (2) 0.3671 (2) 0.0615 (6)
H10A 0.4691 0.4041 0.4471 0.074*
H10B 0.6072 0.5285 0.3488 0.074*
C11 0.4287 (4) 0.4539 (3) 0.2740 (3) 0.0733 (8)
H11 0.3357 0.5200 0.2761 0.088*
C12 0.3332 (3) 0.3132 (3) 0.3014 (3) 0.0759 (8)
H12A 0.2537 0.2768 0.3810 0.091*
H12B 0.2573 0.3246 0.2426 0.091*
C13 0.4766 (3) 0.2112 (2) 0.2971 (2) 0.0541 (5)
H13 0.4143 0.1204 0.3151 0.065*
C14 0.5933 (3) 0.1922 (2) 0.39204 (18) 0.0457 (5)
H14A 0.6834 0.1251 0.3912 0.055*
H14B 0.5145 0.1559 0.4718 0.055*
C15 0.8154 (3) 0.3888 (3) 0.23861 (19) 0.0575 (6)
H15A 0.9072 0.3232 0.2363 0.069*
H15B 0.8793 0.4783 0.2197 0.069*
C16 0.6960 (4) 0.4067 (3) 0.1452 (2) 0.0684 (7)
H16 0.7744 0.4432 0.0643 0.082*
C17 0.6014 (3) 0.2650 (3) 0.1738 (2) 0.0631 (6)
H17A 0.5297 0.2744 0.1133 0.076*
H17B 0.6932 0.1990 0.1728 0.076*
C18 0.5517 (4) 0.5102 (3) 0.1499 (2) 0.0811 (9)
H18A 0.6129 0.6003 0.1320 0.097*
H18B 0.4778 0.5238 0.0896 0.097*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S1 0.0726 (4) 0.0439 (3) 0.0474 (3) 0.0169 (3) −0.0265 (3) −0.0185 (2)
F1 0.0762 (10) 0.1176 (13) 0.0479 (8) 0.0208 (9) −0.0104 (7) −0.0372 (8)
F2 0.0675 (9) 0.0973 (11) 0.0828 (10) 0.0420 (8) −0.0378 (8) −0.0454 (9)
O1 0.0662 (11) 0.0889 (13) 0.0456 (9) 0.0123 (9) −0.0283 (8) −0.0240 (9)
O2 0.1500 (18) 0.0459 (10) 0.1119 (15) 0.0241 (10) −0.0993 (14) −0.0348 (10)
N1 0.0806 (14) 0.0408 (10) 0.0478 (10) 0.0158 (10) −0.0380 (10) −0.0175 (9)
N2 0.0674 (12) 0.0421 (10) 0.0468 (10) 0.0137 (9) −0.0317 (9) −0.0221 (8)
C1 0.0626 (13) 0.0406 (11) 0.0417 (11) 0.0084 (10) −0.0255 (10) −0.0165 (9)
C2 0.0556 (13) 0.0596 (13) 0.0379 (11) 0.0067 (10) −0.0114 (9) −0.0203 (10)
C3 0.0463 (12) 0.0630 (14) 0.0465 (12) 0.0087 (10) −0.0163 (9) −0.0194 (10)
C4 0.0523 (12) 0.0483 (12) 0.0398 (11) 0.0010 (9) −0.0199 (9) −0.0142 (9)
C5 0.0561 (13) 0.0529 (12) 0.0414 (11) 0.0070 (10) −0.0134 (9) −0.0214 (10)
C6 0.0515 (12) 0.0458 (11) 0.0549 (12) 0.0139 (9) −0.0240 (10) −0.0226 (10)
C7 0.0497 (11) 0.0473 (11) 0.0370 (10) 0.0114 (9) −0.0172 (9) −0.0183 (9)
C8 0.0689 (14) 0.0439 (12) 0.0497 (12) 0.0104 (10) −0.0311 (11) −0.0192 (10)
C9 0.0494 (11) 0.0394 (10) 0.0394 (10) 0.0077 (9) −0.0197 (9) −0.0152 (9)
C10 0.0797 (16) 0.0561 (14) 0.0650 (14) 0.0285 (12) −0.0339 (12) −0.0335 (12)
C11 0.0812 (18) 0.0689 (17) 0.0902 (19) 0.0416 (14) −0.0524 (16) −0.0393 (15)
C12 0.0513 (14) 0.090 (2) 0.096 (2) 0.0159 (13) −0.0330 (14) −0.0404 (16)
C13 0.0497 (12) 0.0524 (13) 0.0647 (14) 0.0012 (10) −0.0258 (11) −0.0232 (11)
C14 0.0472 (11) 0.0448 (11) 0.0428 (11) 0.0029 (9) −0.0128 (9) −0.0145 (9)
C15 0.0553 (13) 0.0594 (14) 0.0500 (12) −0.0110 (11) −0.0106 (10) −0.0152 (11)
C16 0.0849 (18) 0.0748 (17) 0.0357 (11) −0.0125 (14) −0.0149 (11) −0.0124 (11)
C17 0.0784 (16) 0.0709 (16) 0.0530 (13) 0.0091 (13) −0.0310 (12) −0.0314 (12)
C18 0.124 (2) 0.0520 (14) 0.0721 (17) 0.0101 (15) −0.0662 (17) −0.0112 (13)

Geometric parameters (Å, º)

S1—C7 1.675 (2) C10—C11 1.529 (3)
F1—C2 1.346 (2) C10—H10A 0.9700
F2—C6 1.349 (2) C10—H10B 0.9700
O1—C4 1.362 (2) C11—C18 1.512 (4)
O1—H1O 0.87 (3) C11—C12 1.517 (4)
O2—C8 1.211 (2) C11—H11 0.9800
N1—C7 1.325 (3) C12—C13 1.514 (3)
N1—C1 1.425 (2) C12—H12A 0.9700
N1—H1 0.79 (2) C12—H12B 0.9700
N2—C7 1.377 (2) C13—C17 1.510 (3)
N2—C8 1.377 (3) C13—C14 1.534 (3)
N2—H2 0.83 (2) C13—H13 0.9800
C1—C6 1.376 (3) C14—H14A 0.9700
C1—C2 1.380 (3) C14—H14B 0.9700
C2—C3 1.369 (3) C15—C16 1.535 (3)
C3—C4 1.382 (3) C15—H15A 0.9700
C3—H3 0.9300 C15—H15B 0.9700
C4—C5 1.382 (3) C16—C17 1.519 (3)
C5—C6 1.373 (3) C16—C18 1.531 (4)
C5—H5 0.9300 C16—H16 0.9800
C8—C9 1.523 (2) C17—H17A 0.9700
C9—C15 1.531 (3) C17—H17B 0.9700
C9—C10 1.538 (3) C18—H18A 0.9700
C9—C14 1.538 (3) C18—H18B 0.9700
C4—O1—H1O 109 (2) C18—C11—H11 109.4
C7—N1—C1 122.30 (17) C12—C11—H11 109.4
C7—N1—H1 119.5 (17) C10—C11—H11 109.4
C1—N1—H1 118.0 (17) C13—C12—C11 109.5 (2)
C7—N2—C8 129.89 (18) C13—C12—H12A 109.8
C7—N2—H2 113.5 (14) C11—C12—H12A 109.8
C8—N2—H2 116.3 (14) C13—C12—H12B 109.8
C6—C1—C2 115.57 (17) C11—C12—H12B 109.8
C6—C1—N1 121.27 (19) H12A—C12—H12B 108.2
C2—C1—N1 123.14 (19) C17—C13—C12 110.9 (2)
F1—C2—C3 118.07 (19) C17—C13—C14 109.09 (17)
F1—C2—C1 118.10 (17) C12—C13—C14 109.23 (19)
C3—C2—C1 123.83 (19) C17—C13—H13 109.2
C2—C3—C4 118.00 (19) C12—C13—H13 109.2
C2—C3—H3 121.0 C14—C13—H13 109.2
C4—C3—H3 121.0 C13—C14—C9 109.91 (16)
O1—C4—C5 122.39 (19) C13—C14—H14A 109.7
O1—C4—C3 116.74 (19) C9—C14—H14A 109.7
C5—C4—C3 120.87 (17) C13—C14—H14B 109.7
C6—C5—C4 118.13 (19) C9—C14—H14B 109.7
C6—C5—H5 120.9 H14A—C14—H14B 108.2
C4—C5—H5 120.9 C9—C15—C16 109.42 (18)
F2—C6—C5 118.48 (19) C9—C15—H15A 109.8
F2—C6—C1 117.93 (17) C16—C15—H15A 109.8
C5—C6—C1 123.58 (19) C9—C15—H15B 109.8
N1—C7—N2 117.75 (17) C16—C15—H15B 109.8
N1—C7—S1 124.67 (14) H15A—C15—H15B 108.2
N2—C7—S1 117.59 (15) C17—C16—C18 110.1 (2)
O2—C8—N2 120.81 (18) C17—C16—C15 109.17 (19)
O2—C8—C9 123.18 (18) C18—C16—C15 109.3 (2)
N2—C8—C9 116.01 (17) C17—C16—H16 109.4
C8—C9—C15 108.41 (17) C18—C16—H16 109.4
C8—C9—C10 107.81 (16) C15—C16—H16 109.4
C15—C9—C10 109.33 (17) C13—C17—C16 109.20 (19)
C8—C9—C14 114.03 (15) C13—C17—H17A 109.8
C15—C9—C14 108.57 (16) C16—C17—H17A 109.8
C10—C9—C14 108.62 (17) C13—C17—H17B 109.8
C11—C10—C9 109.65 (17) C16—C17—H17B 109.8
C11—C10—H10A 109.7 H17A—C17—H17B 108.3
C9—C10—H10A 109.7 C11—C18—C16 109.77 (19)
C11—C10—H10B 109.7 C11—C18—H18A 109.7
C9—C10—H10B 109.7 C16—C18—H18A 109.7
H10A—C10—H10B 108.2 C11—C18—H18B 109.7
C18—C11—C12 109.5 (2) C16—C18—H18B 109.7
C18—C11—C10 108.9 (2) H18A—C18—H18B 108.2
C12—C11—C10 110.4 (2)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
N1—H1···O2 0.79 (2) 2.09 (2) 2.692 (2) 133 (2)
N1—H1···O2i 0.79 (2) 2.52 (2) 3.185 (3) 142 (2)
O1—H1O···S1ii 0.87 (3) 2.36 (3) 3.212 (2) 169 (3)
C14—H14A···S1iii 0.97 2.84 3.761 (2) 159
C14—H14B···F1iv 0.97 2.45 3.354 (3) 155

Symmetry codes: (i) −x+2, −y+1, −z+1; (ii) −x+2, −y, −z+2; (iii) −x+2, −y, −z+1; (iv) x−1, y, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: PV2537).

References

  1. Bruker (1998). SMART Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Bruker (2006). SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Macrae, C. F., Bruno, I. J., Chisholm, J. A., Edgington, P. R., McCabe, P., Pidcock, E., Rodriguez-Monge, L., Taylor, R., van de Streek, J. & Wood, P. A. (2008). J. Appl. Cryst. 41, 466–470.
  4. Saeed, S., Rashid, N., Bhatti, M. H. & Jones, P. G. (2010). Turk. J. Chem. 34, 761–770.
  5. Saeed, S., Rashid, N., Hussain, R. & Jones, P. G. (2011). Eur. J. Chem. 2, 77–82.
  6. Sheldrick, G. M. (2004). SADABS University of Göttingen, Germany.
  7. Sheldrick, G. M. (2008). Acta Cryst A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812018806/pv2537sup1.cif

e-68-o1597-sup1.cif (25.5KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812018806/pv2537Isup2.hkl

e-68-o1597-Isup2.hkl (146.1KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812018806/pv2537Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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