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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 May 5;68(Pt 6):o1642. doi: 10.1107/S1600536812018454

(Z)-1-[4-Fluoro-2-(pyrrolidin-1-yl)phen­yl]-3-phenyl-2-(1H-1,2,4-triazol-1-yl)prop-2-en-1-one

Qin-Mei Wen a, Ben-Tao Yin a, Cong-Yan Yan a, Cheng-He Zhou a,*
PMCID: PMC3379244  PMID: 22719442

Abstract

In the title mol­ecule, C21H19FN4O, the triazole ring forms dihedral angles of 67.0 (1) and 59.6 (1)° with the phenyl and fluoro-substituted benzene rings, respectively. The dihedral angle between the phenyl ring and the fluoro-substituted benzene ring is 79.1 (1)°. The pyrrolidine ring is in a half-chair conformation. In the crystal, weak C—H⋯O and C—H⋯N hydrogen bonds connect mol­ecules into layers parallel to (001).

Related literature  

For clinical uses of triazole compounds, see: Wang & Zhou (2011); Zhou & Wang (2012); Chang et al. (2011). For the synthesis, see: Solankee et al. (2010). For related structures, see: Wang et al. (2009); Yan et al. (2009).graphic file with name e-68-o1642-scheme1.jpg

Experimental  

Crystal data  

  • C21H19FN4O

  • M r = 362.40

  • Monoclinic, Inline graphic

  • a = 11.217 (2) Å

  • b = 10.067 (2) Å

  • c = 15.793 (3) Å

  • β = 94.47 (3)°

  • V = 1778.0 (6) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.09 mm−1

  • T = 173 K

  • 0.30 × 0.08 × 0.03 mm

Data collection  

  • Bruker SMART CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.973, T max = 0.997

  • 13447 measured reflections

  • 3403 independent reflections

  • 2341 reflections with I > 2σ(I)

  • R int = 0.058

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.048

  • wR(F 2) = 0.118

  • S = 1.05

  • 3403 reflections

  • 321 parameters

  • 2 restraints

  • All H-atom parameters refined

  • Δρmax = 0.23 e Å−3

  • Δρmin = −0.19 e Å−3

Data collection: SMART (Bruker, 1997); cell refinement: SAINT (Bruker, 1997); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812018454/lh5432sup1.cif

e-68-o1642-sup1.cif (26KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812018454/lh5432Isup2.hkl

e-68-o1642-Isup2.hkl (166.9KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812018454/lh5432Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C5—H12⋯O1i 0.981 (19) 2.435 (19) 3.347 (2) 154.6 (14)
C16—H23⋯N1ii 0.906 (19) 2.525 (19) 3.388 (3) 159.3 (16)

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

This work was partially supported by the Natural Science Foundation of China (21172181) and the Research Funds for the Central Universities, the key program of the Natural Science Foundation of Chongqing (CSTC2012jjB10026), the Specialized Research Fund for the Doctoral Program of Higher Education of China (SRFDP 20110182110007) and the Research Funds for the Central Universities (XDJK2011D007, XDJK2012B026).

supplementary crystallographic information

Comment

Chalcones are an important type of biologically active compounds with a diarylenone structural unit (Solankee et al., 2010). Triazole compounds have been shown to have clinical uses (Wang et al., 2011; Zhou et al., 2012; Chang et al., 2011). Our group have been contributing to the research and development of triazolyl chalcones as potential antimicrobial agents. Related structures of triazolylchalcones have alreay been reported (Wang et al., 2009; Yan et al., 2009). Herein we report the crystal structure of the title compound (I).

In the molecular structure (Fig. 1) the triazole ring [N1/N2/N3/C9/C10] forms dihedral angles of 67.0 (1) and 59.6 (1)° with the phenyl [C1-C6] and fluoro-substituted benzene [C12-C17] rings. The dihedral angles between the phenyl and fluoro-substituted bezene rings is 79.1 (1)°. The pyrrolidine ring [N4/C18-C21] is in a half-chair conformation. In the crystal, weak C—H···O and C—H···N hydrogen bonds connect molecules into layers parallel to (001).

Experimental

The title compound (I) was synthesized according to the procedure of Solankee et al. (2010). To a stirring mixture of 1-(2,4-difluorophenyl)-2-(1H-1,2,4-triazol-1-yl)ethanone (2.23 g, 10 mmol) and benzaldehyde (1.06 g, 10 mmol) in ethanol (20 mL) in the presence of acetic acid (0.08 mL, 1.4 mmol) was added pyrrolidine (0.71 g, 10 mmol). The mixed solution was refluxed until the reaction came to the end (monitored by TLC). Subsequently, the solvent was removed under reduced pressure, and the residue was dissolved in dichloromethane (20 mL) and extracted with water (3 x 20 mL). The combined organic phase was dried over anhydrous sodium sulfate and concentrated under reduced pressure to produce the crude product, which was purified by silica gel column chromatography eluting with petroleum ether/ethyl acetate (15/1:1/1, V/V) to afford the desired compound. A crystal suitable for X-ray analysis was grown from a solution of (I) in petroleum ether and ethyl acetate by slow evaporation at room temperature.

Refinement

All hydrogen atoms were refined independently with isotropic displacement parameters.

Figures

Fig. 1.

Fig. 1.

Ellipsoid plot.

Crystal data

C21H19FN4O Z = 4
Mr = 362.40 F(000) = 760
Monoclinic, P21/c Dx = 1.354 Mg m3
Hall symbol: -P 2ybc Mo Kα radiation, λ = 0.71073 Å
a = 11.217 (2) Å θ = 2.3–27.7°
b = 10.067 (2) Å µ = 0.09 mm1
c = 15.793 (3) Å T = 173 K
β = 94.47 (3)° Plate, yellow
V = 1778.0 (6) Å3 0.30 × 0.08 × 0.03 mm

Data collection

Bruker SMART CCD diffractometer 3403 independent reflections
Radiation source: fine-focus sealed tube 2341 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.058
φ and ω scans θmax = 26.0°, θmin = 3.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) h = −13→13
Tmin = 0.973, Tmax = 0.997 k = −11→12
13447 measured reflections l = −19→19

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.048 All H-atom parameters refined
wR(F2) = 0.118 w = 1/[σ2(Fo2) + (0.0576P)2] where P = (Fo2 + 2Fc2)/3
S = 1.05 (Δ/σ)max < 0.001
3403 reflections Δρmax = 0.23 e Å3
321 parameters Δρmin = −0.19 e Å3
2 restraints Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methods Extinction coefficient: 0.0075 (13)

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
F1 0.06331 (9) 0.07121 (12) 0.14879 (7) 0.0506 (4)
N3 0.73647 (12) −0.01216 (15) 0.27605 (9) 0.0291 (4)
O1 0.54633 (11) 0.01888 (14) 0.36550 (8) 0.0389 (4)
C8 0.62355 (15) −0.06156 (19) 0.24237 (11) 0.0289 (4)
C16 0.18387 (18) −0.0239 (2) 0.25987 (13) 0.0340 (5)
C17 0.29747 (16) −0.06191 (18) 0.29689 (11) 0.0290 (4)
C12 0.39893 (16) −0.02771 (18) 0.25277 (11) 0.0290 (4)
N2 0.76525 (14) 0.11901 (16) 0.27051 (10) 0.0378 (4)
N4 0.30375 (13) −0.13062 (16) 0.37147 (9) 0.0320 (4)
C13 0.38080 (18) 0.02722 (19) 0.17088 (12) 0.0336 (5)
C6 0.70879 (16) −0.19160 (19) 0.12221 (11) 0.0291 (4)
C11 0.52247 (16) −0.02255 (19) 0.29265 (12) 0.0306 (5)
C7 0.61641 (17) −0.14582 (19) 0.17621 (11) 0.0312 (5)
C3 0.87605 (18) −0.2952 (2) 0.01763 (12) 0.0369 (5)
N1 0.91459 (14) 0.00330 (19) 0.34166 (10) 0.0422 (5)
C5 0.68283 (18) −0.3030 (2) 0.07170 (11) 0.0324 (5)
C2 0.90214 (18) −0.1816 (2) 0.06478 (12) 0.0369 (5)
C1 0.82010 (17) −0.1292 (2) 0.11679 (12) 0.0330 (5)
C15 0.17490 (16) 0.0344 (2) 0.18190 (13) 0.0363 (5)
C18 0.19584 (18) −0.1755 (2) 0.41003 (13) 0.0387 (5)
C10 0.82587 (17) −0.0775 (2) 0.31872 (12) 0.0354 (5)
C9 0.87283 (19) 0.1214 (2) 0.31018 (13) 0.0406 (5)
C14 0.26982 (18) 0.0594 (2) 0.13393 (14) 0.0365 (5)
C4 0.76540 (19) −0.3541 (2) 0.01975 (12) 0.0365 (5)
C21 0.40905 (18) −0.2063 (2) 0.40537 (14) 0.0392 (5)
C20 0.3575 (2) −0.3164 (2) 0.45719 (15) 0.0446 (6)
C19 0.2455 (2) −0.2535 (3) 0.48764 (15) 0.0477 (6)
H15 0.5351 (16) −0.1852 (18) 0.1620 (10) 0.031 (5)*
H23 0.1166 (17) −0.0388 (19) 0.2867 (12) 0.038 (6)*
H3A 0.4540 (15) −0.2398 (18) 0.3554 (11) 0.037 (5)*
H5 0.2578 (17) 0.1005 (19) 0.0796 (12) 0.042 (6)*
H12 0.6041 (17) −0.3451 (19) 0.0728 (11) 0.036 (5)*
H7 0.8209 (17) −0.174 (2) 0.3276 (12) 0.044 (6)*
H8A 0.1441 (17) −0.096 (2) 0.4266 (11) 0.043 (6)*
H2A 0.3393 (17) −0.396 (2) 0.4217 (12) 0.044 (6)*
H18 0.4500 (16) 0.0451 (18) 0.1429 (12) 0.037 (5)*
H6 0.9173 (18) 0.205 (2) 0.3160 (12) 0.048 (6)*
H4 0.7450 (17) −0.432 (2) −0.0150 (12) 0.041 (6)*
H14 0.9352 (18) −0.332 (2) −0.0180 (11) 0.047 (6)*
H11 0.9777 (18) −0.1339 (19) 0.0632 (11) 0.039 (5)*
H8B 0.1457 (18) −0.2321 (19) 0.3678 (12) 0.046 (6)*
H10 0.8385 (17) −0.0451 (19) 0.1478 (12) 0.044 (6)*
H3B 0.4656 (19) −0.144 (2) 0.4417 (13) 0.057 (7)*
H1A 0.1847 (19) −0.322 (2) 0.5052 (13) 0.060 (7)*
H2B 0.4184 (19) −0.346 (2) 0.5040 (12) 0.049 (6)*
H1B 0.267 (2) −0.193 (2) 0.5352 (14) 0.068 (8)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
F1 0.0285 (7) 0.0611 (9) 0.0608 (8) 0.0060 (6) −0.0043 (6) 0.0095 (6)
N3 0.0224 (8) 0.0345 (10) 0.0308 (8) −0.0006 (7) 0.0053 (7) −0.0009 (7)
O1 0.0283 (8) 0.0522 (10) 0.0372 (8) −0.0007 (7) 0.0075 (6) −0.0078 (7)
C8 0.0218 (10) 0.0320 (11) 0.0329 (10) 0.0000 (8) 0.0030 (8) 0.0016 (9)
C16 0.0223 (10) 0.0366 (12) 0.0439 (12) −0.0043 (9) 0.0078 (9) −0.0025 (10)
C17 0.0254 (10) 0.0299 (11) 0.0322 (10) −0.0002 (8) 0.0048 (8) −0.0047 (8)
C12 0.0236 (10) 0.0302 (11) 0.0337 (10) 0.0025 (8) 0.0058 (8) −0.0019 (8)
N2 0.0318 (10) 0.0360 (10) 0.0458 (10) −0.0048 (8) 0.0035 (8) −0.0013 (8)
N4 0.0231 (8) 0.0370 (10) 0.0367 (9) 0.0018 (7) 0.0083 (7) −0.0001 (7)
C13 0.0277 (11) 0.0356 (12) 0.0387 (11) −0.0006 (9) 0.0098 (10) 0.0000 (9)
C6 0.0257 (10) 0.0330 (11) 0.0288 (10) 0.0029 (9) 0.0035 (8) 0.0026 (8)
C11 0.0268 (10) 0.0327 (11) 0.0329 (11) 0.0002 (9) 0.0066 (9) 0.0015 (9)
C7 0.0235 (10) 0.0355 (12) 0.0355 (11) −0.0020 (9) 0.0070 (9) 0.0044 (9)
C3 0.0363 (12) 0.0447 (13) 0.0306 (10) 0.0121 (10) 0.0084 (9) 0.0003 (10)
N1 0.0268 (9) 0.0613 (13) 0.0389 (10) −0.0053 (9) 0.0053 (8) 0.0048 (9)
C5 0.0337 (11) 0.0331 (12) 0.0308 (10) −0.0020 (10) 0.0042 (9) 0.0042 (9)
C2 0.0249 (11) 0.0521 (14) 0.0341 (11) 0.0002 (10) 0.0048 (9) 0.0006 (10)
C1 0.0272 (11) 0.0398 (12) 0.0325 (10) 0.0008 (9) 0.0060 (9) −0.0008 (10)
C15 0.0219 (10) 0.0383 (12) 0.0480 (12) 0.0018 (9) −0.0028 (9) −0.0021 (10)
C18 0.0315 (11) 0.0439 (14) 0.0429 (12) −0.0019 (10) 0.0172 (10) 0.0001 (10)
C10 0.0260 (11) 0.0468 (14) 0.0340 (11) 0.0029 (10) 0.0068 (9) 0.0041 (10)
C9 0.0330 (12) 0.0464 (14) 0.0427 (12) −0.0101 (11) 0.0049 (10) −0.0016 (11)
C14 0.0358 (12) 0.0367 (12) 0.0371 (12) 0.0028 (10) 0.0032 (10) 0.0045 (10)
C4 0.0436 (13) 0.0345 (13) 0.0319 (11) 0.0027 (10) 0.0069 (10) −0.0014 (10)
C21 0.0328 (12) 0.0448 (14) 0.0409 (12) 0.0070 (11) 0.0086 (10) 0.0048 (11)
C20 0.0460 (14) 0.0441 (15) 0.0447 (13) 0.0036 (12) 0.0099 (11) 0.0071 (12)
C19 0.0506 (15) 0.0478 (15) 0.0471 (13) −0.0030 (12) 0.0187 (12) 0.0058 (12)

Geometric parameters (Å, º)

F1—C15 1.370 (2) C3—H14 0.974 (19)
N3—C10 1.337 (2) N1—C10 1.314 (3)
N3—N2 1.364 (2) N1—C9 1.358 (3)
N3—C8 1.425 (2) C5—C4 1.383 (3)
O1—C11 1.233 (2) C5—H12 0.980 (19)
C8—C7 1.343 (3) C2—C1 1.385 (3)
C8—C11 1.487 (2) C2—H11 0.976 (19)
C16—C15 1.361 (3) C1—H10 0.99 (2)
C16—C17 1.413 (3) C15—C14 1.377 (3)
C16—H23 0.906 (19) C18—C19 1.524 (3)
C17—N4 1.363 (2) C18—H8A 1.03 (2)
C17—C12 1.422 (2) C18—H8B 1.01 (2)
C12—C13 1.407 (3) C10—H7 0.98 (2)
C12—C11 1.478 (3) C9—H6 0.98 (2)
N2—C9 1.316 (3) C14—H5 0.954 (19)
N4—C18 1.468 (2) C4—H4 0.98 (2)
N4—C21 1.471 (2) C21—C20 1.519 (3)
C13—C14 1.372 (3) C21—H3A 1.026 (18)
C13—H18 0.940 (19) C21—H3B 1.03 (2)
C6—C5 1.394 (3) C20—C19 1.519 (3)
C6—C1 1.406 (3) C20—H2A 0.99 (2)
C6—C7 1.467 (2) C20—H2B 1.01 (2)
C7—H15 1.004 (18) C19—H1A 1.03 (2)
C3—C4 1.378 (3) C19—H1B 0.98 (2)
C3—C2 1.384 (3)
C10—N3—N2 109.69 (16) C2—C1—H10 119.7 (11)
C10—N3—C8 128.79 (17) C6—C1—H10 120.2 (11)
N2—N3—C8 121.47 (15) C16—C15—F1 117.59 (17)
C7—C8—N3 120.55 (16) C16—C15—C14 124.80 (18)
C7—C8—C11 125.48 (17) F1—C15—C14 117.60 (17)
N3—C8—C11 113.65 (15) N4—C18—C19 103.35 (17)
C15—C16—C17 119.48 (19) N4—C18—H8A 111.4 (10)
C15—C16—H23 119.3 (12) C19—C18—H8A 111.9 (10)
C17—C16—H23 121.2 (12) N4—C18—H8B 109.5 (11)
N4—C17—C16 118.64 (16) C19—C18—H8B 112.8 (11)
N4—C17—C12 123.83 (16) H8A—C18—H8B 107.9 (15)
C16—C17—C12 117.52 (17) N1—C10—N3 110.9 (2)
C13—C12—C17 118.80 (17) N1—C10—H7 128.5 (12)
C13—C12—C11 116.20 (16) N3—C10—H7 120.6 (12)
C17—C12—C11 124.01 (16) N2—C9—N1 115.8 (2)
C9—N2—N3 101.55 (17) N2—C9—H6 120.1 (12)
C17—N4—C18 121.73 (16) N1—C9—H6 124.1 (12)
C17—N4—C21 124.29 (15) C13—C14—C15 115.96 (19)
C18—N4—C21 110.76 (15) C13—C14—H5 123.1 (12)
C14—C13—C12 123.04 (19) C15—C14—H5 120.9 (12)
C14—C13—H18 120.7 (11) C3—C4—C5 120.1 (2)
C12—C13—H18 116.2 (11) C3—C4—H4 120.3 (11)
C5—C6—C1 118.15 (17) C5—C4—H4 119.6 (11)
C5—C6—C7 117.39 (17) N4—C21—C20 104.23 (17)
C1—C6—C7 124.45 (18) N4—C21—H3A 108.6 (10)
O1—C11—C12 122.52 (16) C20—C21—H3A 113.9 (10)
O1—C11—C8 117.93 (16) N4—C21—H3B 109.3 (12)
C12—C11—C8 119.47 (16) C20—C21—H3B 112.6 (12)
C8—C7—C6 130.44 (18) H3A—C21—H3B 108.0 (15)
C8—C7—H15 114.9 (10) C21—C20—C19 103.03 (19)
C6—C7—H15 114.6 (10) C21—C20—H2A 110.8 (11)
C4—C3—C2 119.69 (19) C19—C20—H2A 112.1 (12)
C4—C3—H14 120.5 (12) C21—C20—H2B 110.3 (12)
C2—C3—H14 119.8 (12) C19—C20—H2B 114.9 (12)
C10—N1—C9 102.06 (18) H2A—C20—H2B 105.9 (17)
C4—C5—C6 121.24 (19) C20—C19—C18 102.69 (18)
C4—C5—H12 119.7 (11) C20—C19—H1A 112.8 (12)
C6—C5—H12 119.1 (11) C18—C19—H1A 110.9 (12)
C3—C2—C1 120.8 (2) C20—C19—H1B 110.2 (14)
C3—C2—H11 122.7 (11) C18—C19—H1B 110.3 (14)
C1—C2—H11 116.5 (12) H1A—C19—H1B 109.8 (18)
C2—C1—C6 120.0 (2)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
C5—H12···O1i 0.981 (19) 2.435 (19) 3.347 (2) 154.6 (14)
C16—H23···N1ii 0.906 (19) 2.525 (19) 3.388 (3) 159.3 (16)

Symmetry codes: (i) −x+1, y−1/2, −z+1/2; (ii) x−1, y, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: LH5432).

References

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  5. Solankee, A., Kapadia, K., Ćirić, A., Soković, M., Doytchinova, I. & Geronikaki, A. (2010). Eur. J. Med. Chem. 45, 510–518. [DOI] [PubMed]
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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812018454/lh5432sup1.cif

e-68-o1642-sup1.cif (26KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812018454/lh5432Isup2.hkl

e-68-o1642-Isup2.hkl (166.9KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812018454/lh5432Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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