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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 May 5;68(Pt 6):o1644–o1645. doi: 10.1107/S160053681201937X

(E)-1-(2,4-Dinitro­phen­yl)-2-[1-(3-fluoro­phen­yl)ethyl­idene]hydrazine

Suchada Chantrapromma a,*,, Boonlerd Nilwanna a, Thawanrat Kobkeatthawin a, Patcharaporn Jansrisewangwong a, Hoong-Kun Fun b,§
PMCID: PMC3379246  PMID: 22719444

Abstract

The mol­ecule of the title hydrazone derivative, C14H11FN4O4, is nearly planar, with a dihedral angle between the benzene rings of 3.71 (7)°. The central ethyl­idenehydrazine N—N=C—C plane makes dihedral angles of 5.32 (10) and 9.02 (10)° with the 2,4-dinitro- and 3-fluoro-substituted benzene rings, respectively. An intra­molecular N—H⋯O bond generates an S(6) ring motif. In the crystal, mol­ecules are linked by weak C—H⋯O inter­actions into a sheet parallel to (10-1). The mol­ecules are further stacked along the a axis by π–π inter­actions with centroid–centroid distances of 3.6314 (9) and 3.7567 (10) Å. A C⋯F short contact [2.842 (3) Å] is observed. The 3-fluoro­phenyl group is disordered over two orientations with a site-occupancy ratio of 0.636 (3):0.364 (3).

Related literature  

For bond-length data, see: Allen et al. (1987). For hydrogen-bond motifs, see: Bernstein et al. (1995). For related structures, see: Chantrapromma et al. (2011); Fun et al. (2011, 2012); Nilwanna et al. (2011). For background to and the biological activity of hydro­zones, see: Cui et al. (2010); Gokce et al. (2009); Krishnamoorthy et al. (2011); Molyneux (2004); Wang et al. (2009). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986).graphic file with name e-68-o1644-scheme1.jpg

Experimental  

Crystal data  

  • C14H11FN4O4

  • M r = 318.27

  • Monoclinic, Inline graphic

  • a = 7.0165 (6) Å

  • b = 13.3336 (11) Å

  • c = 14.4498 (12) Å

  • β = 94.791 (2)°

  • V = 1347.1 (2) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.13 mm−1

  • T = 100 K

  • 0.39 × 0.15 × 0.14 mm

Data collection  

  • Bruker APEX DUO CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2009) T min = 0.952, T max = 0.982

  • 15079 measured reflections

  • 3874 independent reflections

  • 3126 reflections with I > 2σ(I)

  • R int = 0.054

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.052

  • wR(F 2) = 0.155

  • S = 1.07

  • 3874 reflections

  • 223 parameters

  • 2 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.70 e Å−3

  • Δρmin = −0.59 e Å−3

Data collection: APEX2 (Bruker, 2009); cell refinement: SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681201937X/is5116sup1.cif

e-68-o1644-sup1.cif (25.4KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681201937X/is5116Isup2.hkl

e-68-o1644-Isup2.hkl (189.9KB, hkl)

Supplementary material file. DOI: 10.1107/S160053681201937X/is5116Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N2—H1N2⋯O1 0.89 (2) 1.90 (2) 2.6038 (18) 135 (2)
C9—H9A⋯O1i 0.93 2.58 3.413 (2) 150
C13—H13A⋯O4ii 0.93 2.44 3.176 (2) 137

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

BN, TK and PJ thank the Crystal Materials Research Unit, Prince of Songkla University, for financial support. The authors thank Prince of Songkla University and Universiti Sains Malaysia for the Research University Grant No. 1001/PFIZIK/811160.

supplementary crystallographic information

Comment

The variety of interesting biological activities of hydrazones and their complexes such as antibacterial, antifungal, anti-inflammatory as well as antioxidant properties (Cui et al., 2010; Gokce et al., 2009; Krishnamoorthy et al., 2011; Wang et al., 2009) has prompted us to synthesize several hydrazone derivatives and to study for their biological activities. However the title compound (I) which was synthesized for the evaluation of its antioxidant activity by DPPH scavenging (Molyneux, 2004) was found to be inactive. Herein we report the synthesis and crystal structure of (I).

In the molecular structure of (I), C14H11FN4O4, the F atoms of the 3-fluorophenyl group is disordered over two positions with the major component A and the minor B component rotated by 180° about the C7—C8 bond and having a refined site-occupancy ratio of 0.636 (3):0.364 (3) (Fig. 1). The molecule is nearly planar with a dihedral angle between the two benzene rings being 3.71 (7)°. The middle ethylidenehydrazine bridge is planar with the torsion angle N2–N1–C7–C14 = 0.8 (2)°. The mean plane through this middle bridge makes dihedral angles of 5.32 (10) and 9.02 (10)° with the 2,4-dinitrophenyl and 3-fluorophenyl rings, respectively. The two nitro groups of the 2,4-dinitrophenyl unit are slightly twisted with the attached benzene ring as indicated by the torsion angles O1–N3–C2–C1 = -3.8 (2)°, O2–N3–C2–C1 = 176.52 (15)°, O3–N4–C4–C3 = -8.3 (2)° and O4–N4–C4–C3 = 171.96 (16)°. An intramolecular N2—H1N2···O1 hydrogen bond (Fig.1 and Table 1) generates an S(6) ring motif (Bernstein et al., 1995). The bond distances are in normal ranges (Allen et al., 1987) and are comparable with the closely related structures (Chantrapromma et al., 2011; Fun et al., 2011, 2012; Nilwanna et al., 2011).

In the crystal packing (Fig. 2), the molecules are linked by weak C—H···O interactions (Table 1) into a sheet parallel to the (101) plane and these sheets are stacked along the a axis by π–π interactions with centroid-to-centroid distances Cg1···Cg2 = 3.7567 (10)iii and 3.6314 (9)iv Å [symmetry codes (iii) = -x, 1-y, 1-z and (iv) = 1-x, 1-y, 1-z)]. A C14···F1Bv [2.905 (3) Å ; symmetry code (v) = -x, -1/2+y, 1/2-z] short contact is observed.

Experimental

The title compound (I) was synthesized by dissolving 2,4-dinitrophenylhydrazine (0.40 g, 2 mmol) in ethanol (10.00 ml) and H2SO4 (conc.) (98 %, 0.50 ml) was slowly added with stirring. 3-Fluoroacetophenone (0.25 ml, 2 mmol) was then added to the solution with continuous stirring. The solution was stirred for 1 hr yielding an yellow solid, which was filtered off and washed with methanol. Yellow block-shaped single crystals of the title compound suitable for x-ray structure determination were recrystallized from ethanol by slow evaporation of the solvent at room temperature over several days. M.p. 503-504 K.

Refinement

Amide H atom was located in a Fourier difference map and refined isotropically. The remaining H atoms were positioned geometrically and allowed to ride on their parent atoms, with d(C—H) = 0.93 Å for aromatic and 0.96 Å for CH3 atoms. The Uiso values were constrained to be 1.5Ueq of the carrier atom for methyl H atoms and 1.2Ueq for the remaining H atoms. A rotating group model was used for the methyl groups. The F atom was found to be disordered over two sites in a 0.636 (3): 0.364 (3) occupancy ratio. In the final refinement, distance restraints were used for the disordered C—F bonds.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound, with 45% probability displacement ellipsoids and the atom-numbering scheme. Open bonds show the minor component. The hydrogen bond is shown as a dashed line.

Fig. 2.

Fig. 2.

The crystal packing of the major component of the title compound viewed down the a axis. Hydrogen bonds are shown as dashed lines.

Crystal data

C14H11FN4O4 F(000) = 656
Mr = 318.27 Dx = 1.569 Mg m3
Monoclinic, P21/c Melting point = 503–504 K
Hall symbol: -P 2ybc Mo Kα radiation, λ = 0.71073 Å
a = 7.0165 (6) Å Cell parameters from 3874 reflections
b = 13.3336 (11) Å θ = 2.1–30.0°
c = 14.4498 (12) Å µ = 0.13 mm1
β = 94.791 (2)° T = 100 K
V = 1347.1 (2) Å3 Block, yellow
Z = 4 0.39 × 0.15 × 0.14 mm

Data collection

Bruker APEX DUO CCD area-detector diffractometer 3874 independent reflections
Radiation source: sealed tube 3126 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.054
φ and ω scans θmax = 30.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2009) h = −9→9
Tmin = 0.952, Tmax = 0.982 k = −18→18
15079 measured reflections l = −20→19

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.155 H atoms treated by a mixture of independent and constrained refinement
S = 1.07 w = 1/[σ2(Fo2) + (0.0567P)2 + 0.806P] where P = (Fo2 + 2Fc2)/3
3874 reflections (Δ/σ)max = 0.001
223 parameters Δρmax = 0.70 e Å3
2 restraints Δρmin = −0.59 e Å3

Special details

Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq Occ. (<1)
O1 0.16769 (19) 0.27587 (9) 0.33374 (8) 0.0286 (3)
O2 0.2526 (2) 0.12572 (9) 0.37606 (9) 0.0362 (3)
O3 0.4548 (2) 0.04192 (10) 0.68409 (10) 0.0395 (3)
O4 0.5525 (2) 0.15695 (12) 0.78252 (10) 0.0421 (4)
N1 0.22627 (19) 0.52482 (9) 0.47367 (9) 0.0204 (3)
N2 0.2316 (2) 0.42615 (10) 0.44717 (9) 0.0211 (3)
H1N2 0.187 (4) 0.4037 (18) 0.3918 (17) 0.039 (6)*
N3 0.2368 (2) 0.21543 (10) 0.39303 (9) 0.0239 (3)
N4 0.4801 (2) 0.13015 (11) 0.70636 (10) 0.0283 (3)
C1 0.2965 (2) 0.35508 (11) 0.50920 (10) 0.0190 (3)
C2 0.2999 (2) 0.25164 (11) 0.48499 (10) 0.0197 (3)
C3 0.3613 (2) 0.17866 (11) 0.54990 (11) 0.0212 (3)
H3A 0.3624 0.1113 0.5332 0.025*
C4 0.4199 (2) 0.20773 (12) 0.63873 (11) 0.0224 (3)
C5 0.4229 (2) 0.30902 (13) 0.66526 (11) 0.0231 (3)
H5A 0.4656 0.3272 0.7256 0.028*
C6 0.3626 (2) 0.38075 (12) 0.60177 (10) 0.0210 (3)
H6A 0.3649 0.4478 0.6196 0.025*
C7 0.1518 (2) 0.58571 (11) 0.41102 (10) 0.0202 (3)
C8 0.1511 (2) 0.69296 (11) 0.43865 (11) 0.0205 (3)
C9 0.1014 (2) 0.76901 (13) 0.37412 (12) 0.0264 (3)
H9A 0.0644 0.7534 0.3125 0.032*
C10 0.1085 (3) 0.86754 (13) 0.40379 (13) 0.0332 (4)
H10A 0.0755 0.9175 0.3605 0.040* 0.636 (4)
F1A 0.2507 (3) 0.84685 (12) 0.64414 (10) 0.0370 (5) 0.636 (4)
C11 0.1615 (3) 0.89560 (13) 0.49351 (14) 0.0310 (4)
H11A 0.1654 0.9626 0.5115 0.037*
C12 0.2086 (2) 0.81953 (12) 0.55571 (10) 0.0277 (3)
H12A 0.2449 0.8363 0.6171 0.033* 0.364 (4)
F1B 0.0366 (5) 0.9380 (2) 0.3455 (2) 0.0441 (10) 0.364 (4)
C13 0.2046 (2) 0.71958 (11) 0.53113 (11) 0.0227 (3)
H13A 0.2369 0.6704 0.5753 0.027*
C14 0.0737 (3) 0.55223 (14) 0.31617 (11) 0.0284 (4)
H14A −0.0124 0.4970 0.3219 0.043*
H14B 0.1771 0.5314 0.2811 0.043*
H14C 0.0064 0.6068 0.2848 0.043*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0396 (7) 0.0257 (6) 0.0197 (5) 0.0008 (5) −0.0015 (5) −0.0019 (4)
O2 0.0563 (9) 0.0211 (6) 0.0306 (6) 0.0018 (6) 0.0001 (6) −0.0088 (5)
O3 0.0511 (9) 0.0265 (6) 0.0403 (7) −0.0014 (6) −0.0006 (6) 0.0095 (5)
O4 0.0501 (9) 0.0426 (8) 0.0307 (7) 0.0046 (7) −0.0129 (6) 0.0045 (6)
N1 0.0226 (6) 0.0174 (6) 0.0214 (6) −0.0015 (5) 0.0035 (5) −0.0011 (5)
N2 0.0264 (7) 0.0184 (6) 0.0183 (6) −0.0002 (5) 0.0016 (5) −0.0019 (4)
N3 0.0285 (7) 0.0220 (6) 0.0212 (6) −0.0015 (5) 0.0027 (5) −0.0042 (5)
N4 0.0263 (7) 0.0300 (7) 0.0285 (7) 0.0008 (6) 0.0015 (6) 0.0062 (6)
C1 0.0179 (6) 0.0197 (6) 0.0198 (6) −0.0015 (5) 0.0037 (5) −0.0013 (5)
C2 0.0191 (7) 0.0213 (7) 0.0188 (6) −0.0017 (5) 0.0029 (5) −0.0025 (5)
C3 0.0196 (7) 0.0195 (6) 0.0248 (7) −0.0017 (5) 0.0034 (5) −0.0002 (5)
C4 0.0192 (7) 0.0257 (7) 0.0223 (7) −0.0008 (6) 0.0019 (5) 0.0039 (6)
C5 0.0205 (7) 0.0279 (8) 0.0207 (7) −0.0027 (6) 0.0014 (5) −0.0017 (5)
C6 0.0206 (7) 0.0218 (7) 0.0207 (7) −0.0019 (5) 0.0013 (5) −0.0033 (5)
C7 0.0197 (7) 0.0216 (7) 0.0197 (6) 0.0008 (5) 0.0037 (5) −0.0017 (5)
C8 0.0184 (7) 0.0201 (7) 0.0233 (7) 0.0005 (5) 0.0029 (5) 0.0011 (5)
C9 0.0234 (7) 0.0276 (8) 0.0278 (8) 0.0030 (6) 0.0003 (6) 0.0044 (6)
C10 0.0272 (8) 0.0261 (8) 0.0454 (10) 0.0061 (7) −0.0008 (7) 0.0070 (7)
F1A 0.0497 (11) 0.0250 (8) 0.0343 (9) 0.0030 (7) −0.0078 (8) −0.0097 (6)
C11 0.0257 (8) 0.0192 (7) 0.0478 (10) 0.0025 (6) 0.0020 (7) −0.0024 (7)
C12 0.0258 (8) 0.0222 (7) 0.0353 (9) −0.0019 (6) 0.0031 (7) −0.0064 (6)
F1B 0.059 (2) 0.0236 (15) 0.048 (2) 0.0038 (14) −0.0056 (16) 0.0141 (13)
C13 0.0247 (7) 0.0192 (7) 0.0241 (7) −0.0009 (6) 0.0023 (6) −0.0003 (5)
C14 0.0348 (9) 0.0297 (8) 0.0203 (7) 0.0060 (7) −0.0011 (6) −0.0033 (6)

Geometric parameters (Å, º)

O1—N3 1.2447 (18) C7—C8 1.485 (2)
O2—N3 1.2279 (18) C7—C14 1.501 (2)
O3—N4 1.229 (2) C8—C9 1.402 (2)
O4—N4 1.226 (2) C8—C13 1.403 (2)
N1—C7 1.293 (2) C9—C10 1.381 (3)
N1—N2 1.3716 (18) C9—H9A 0.9300
N2—C1 1.357 (2) C10—F1B 1.3322 (10)
N2—H1N2 0.89 (2) C10—C11 1.371 (3)
N3—C2 1.4478 (19) C10—H10A 0.9300
N4—C4 1.461 (2) F1A—C12 1.3377 (10)
C1—C6 1.420 (2) C11—C12 1.377 (2)
C1—C2 1.424 (2) C11—H11A 0.9300
C2—C3 1.395 (2) C12—C13 1.379 (2)
C3—C4 1.371 (2) C12—H12A 0.9300
C3—H3A 0.9300 C13—H13A 0.9300
C4—C5 1.404 (2) C14—H14A 0.9600
C5—C6 1.368 (2) C14—H14B 0.9600
C5—H5A 0.9300 C14—H14C 0.9600
C6—H6A 0.9300
C7—N1—N2 115.18 (13) C8—C7—C14 121.53 (14)
C1—N2—N1 120.07 (13) C9—C8—C13 118.84 (15)
C1—N2—H1N2 115.7 (16) C9—C8—C7 121.61 (14)
N1—N2—H1N2 124.1 (16) C13—C8—C7 119.55 (13)
O2—N3—O1 121.97 (14) C10—C9—C8 118.75 (16)
O2—N3—C2 118.85 (14) C10—C9—H9A 120.6
O1—N3—C2 119.18 (13) C8—C9—H9A 120.6
O4—N4—O3 123.64 (15) F1B—C10—C11 117.6 (2)
O4—N4—C4 117.97 (15) F1B—C10—C9 118.2 (2)
O3—N4—C4 118.39 (15) C11—C10—C9 123.58 (15)
N2—C1—C6 121.26 (14) C11—C10—H10A 118.2
N2—C1—C2 121.73 (13) C9—C10—H10A 118.2
C6—C1—C2 117.01 (13) C10—C11—C12 116.59 (15)
C3—C2—C1 121.42 (14) C10—C11—H11A 121.7
C3—C2—N3 115.98 (13) C12—C11—H11A 121.7
C1—C2—N3 122.59 (13) F1A—C12—C11 116.40 (16)
C4—C3—C2 118.96 (14) F1A—C12—C13 120.49 (16)
C4—C3—H3A 120.5 C11—C12—C13 123.03 (14)
C2—C3—H3A 120.5 C11—C12—H12A 118.5
C3—C4—C5 121.62 (14) C13—C12—H12A 118.5
C3—C4—N4 118.27 (14) C12—C13—C8 119.20 (14)
C5—C4—N4 120.11 (14) C12—C13—H13A 120.4
C6—C5—C4 119.53 (14) C8—C13—H13A 120.4
C6—C5—H5A 120.2 C7—C14—H14A 109.5
C4—C5—H5A 120.2 C7—C14—H14B 109.5
C5—C6—C1 121.44 (14) H14A—C14—H14B 109.5
C5—C6—H6A 119.3 C7—C14—H14C 109.5
C1—C6—H6A 119.3 H14A—C14—H14C 109.5
N1—C7—C8 115.24 (13) H14B—C14—H14C 109.5
N1—C7—C14 123.22 (14)
C7—N1—N2—C1 −176.16 (14) C4—C5—C6—C1 0.1 (2)
N1—N2—C1—C6 −0.9 (2) N2—C1—C6—C5 178.07 (14)
N1—N2—C1—C2 178.42 (13) C2—C1—C6—C5 −1.3 (2)
N2—C1—C2—C3 −178.00 (14) N2—N1—C7—C8 −178.27 (12)
C6—C1—C2—C3 1.4 (2) N2—N1—C7—C14 0.8 (2)
N2—C1—C2—N3 0.7 (2) N1—C7—C8—C9 170.45 (14)
C6—C1—C2—N3 −179.90 (13) C14—C7—C8—C9 −8.6 (2)
O2—N3—C2—C3 −4.7 (2) N1—C7—C8—C13 −8.4 (2)
O1—N3—C2—C3 174.98 (14) C14—C7—C8—C13 172.56 (15)
O2—N3—C2—C1 176.52 (15) C13—C8—C9—C10 0.5 (2)
O1—N3—C2—C1 −3.8 (2) C7—C8—C9—C10 −178.31 (15)
C1—C2—C3—C4 −0.2 (2) C8—C9—C10—F1B −171.0 (2)
N3—C2—C3—C4 −178.96 (13) C8—C9—C10—C11 −0.1 (3)
C2—C3—C4—C5 −1.2 (2) F1B—C10—C11—C12 170.7 (2)
C2—C3—C4—N4 178.77 (13) C9—C10—C11—C12 −0.3 (3)
O4—N4—C4—C3 171.96 (16) C10—C11—C12—F1A −176.64 (18)
O3—N4—C4—C3 −8.3 (2) C10—C11—C12—C13 0.1 (3)
O4—N4—C4—C5 −8.1 (2) F1A—C12—C13—C8 176.95 (17)
O3—N4—C4—C5 171.62 (16) C11—C12—C13—C8 0.3 (3)
C3—C4—C5—C6 1.3 (2) C9—C8—C13—C12 −0.6 (2)
N4—C4—C5—C6 −178.70 (14) C7—C8—C13—C12 178.24 (14)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
N2—H1N2···O1 0.89 (2) 1.90 (2) 2.6038 (18) 135 (2)
C9—H9A···O1i 0.93 2.58 3.413 (2) 150
C13—H13A···O4ii 0.93 2.44 3.176 (2) 137

Symmetry codes: (i) −x, y+1/2, −z+1/2; (ii) −x+1, y+1/2, −z+3/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: IS5116).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681201937X/is5116sup1.cif

e-68-o1644-sup1.cif (25.4KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681201937X/is5116Isup2.hkl

e-68-o1644-Isup2.hkl (189.9KB, hkl)

Supplementary material file. DOI: 10.1107/S160053681201937X/is5116Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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