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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 May 12;68(Pt 6):o1689. doi: 10.1107/S1600536812020016

Methyl (R)-2-(2-chloro­phen­yl)-2-(3-nitro­phenyl­sulfon­yloxy)acetate

Ying-Hua Li a, Hong-Wu Xu a,*, Liu-Xue Zhang a
PMCID: PMC3379285  PMID: 22719483

Abstract

The reaction between methyl (R)-2-(2-chloro­phen­yl)-2-hy­droxy­acetate and 3-nitro­benzene­sulfonyl chloride gave the title compound, C15H12ClNO7S, which is a promising inter­mediate for the synthesis of Clopidrogel, an anti­platelet drug used in the prevention of strokes and heart attacks. In the crystal, mol­ecules are linked through C—H⋯O interactions, and there is also a short Cl⋯O contact present [Cl⋯O = 3.018 (2) Å].

Related literature  

For the synthesis of (R)-2-(2-chloro­phen­yl)-2-hy­droxy­acetic acid, see: Bousquet & Musolino (2003). For related structures, see: Sun et al. (2007); Andersen et al. (2007). For the synthesis of Clopidrogel from sulfonyl­oxyacetic esters of (R)-2-(2-chloro­phen­yl)-2-hy­droxy­acetic acid, see: Bousquet & Musolino (1999); Castaldi et al. (2003); Ema et al. (2007); Zhu et al. (2010). For halogen bonds, see: Bianchi et al. (2004); Fourmigue (2009); Metrangolo et al. (2005).graphic file with name e-68-o1689-scheme1.jpg

Experimental  

Crystal data  

  • C15H12ClNO7S

  • M r = 385.77

  • Orthorhombic, Inline graphic

  • a = 7.5791 (3) Å

  • b = 11.0242 (5) Å

  • c = 19.6736 (7) Å

  • V = 1643.80 (11) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.40 mm−1

  • T = 293 K

  • 0.30 × 0.25 × 0.22 mm

Data collection  

  • Agilent Xcalibur Eos Gemini diffractometer

  • Absorption correction: multi-scan (Crysalis PRO; Agilent, 2011) T min = 0.890, T max = 0.918

  • 5654 measured reflections

  • 3153 independent reflections

  • 2680 reflections with I > 2σ(I)

  • R int = 0.023

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.039

  • wR(F 2) = 0.086

  • S = 1.02

  • 3153 reflections

  • 227 parameters

  • H-atom parameters constrained

  • Δρmax = 0.21 e Å−3

  • Δρmin = −0.21 e Å−3

  • Absolute structure: Flack (1983), 1209 Friedel pairs

  • Flack parameter: 0.07 (7)

Data collection: Crysalis PRO (Agilent, 2011); cell refinement: Crysalis PRO; data reduction: Crysalis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL/PC (Sheldrick, 2008); software used to prepare material for publication: SHELXTL/PC and PLATON (Spek, 2009).

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812020016/zl2477sup1.cif

e-68-o1689-sup1.cif (17.3KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812020016/zl2477Isup2.hkl

e-68-o1689-Isup2.hkl (154.7KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812020016/zl2477Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C14—H5⋯O4 0.93 2.55 2.920 (4) 104
C14—H5⋯O1i 0.93 2.60 3.323 (4) 135
C15—H8C⋯O5ii 0.96 2.53 3.419 (4) 155

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

This work was supported by the Program for Science and Technology Innovation Talents at the Universities of Henan Province (grant No. 2011HASTIT022).

supplementary crystallographic information

Comment

Sulfonyloxyacetic esters of (R)-methyl-2-(2-chlorophenyl)-2-hydroxyacetate are commonly used in the synthesis of Clopidrogel, an antiplatelet drug used in the prevention of strokes and heart attacks (sold in the United States under the brand name of Plavix) (Bousquet & Musolino, 1999; Castaldi et al., 2003; Ema et al., 2007; Zhu et al., 2010). The title compound, a promising intermediate for the synthesis of Clopidrogel, was obtained in two steps from (R)-2-(2-chlorophenyl)-2-hydroxyacetic acid (Bousquet & Musolino, 2003). We report here its crystal structure. In the molecule of the title compound (Fig. 1), the main bond lengths and angles are close to those found in some other derivatives of (R)-methyl-2-(2-chlorophenyl)-2-hydroxyacetate (for example, (R)-methyl-2-(2-chlorophenyl)-2-(benzenesulfonyloxy) acetate and 4aR,11R,11aS)-11-methyl-9- (trifluoromethyl)-1,2,2,3,4,4a,5,6,11,11adecahydro-pyrido[4,3-b] carbazole (R)-2-chloromandelate (Sun et al., 2007; Andersen et al., 2007). The crystal structure of this compound is stabilized by an intermolecular halogen bond (Bianchi et al., 2004; Fourmigue, 2009; Metrangolo et al., 2005) between the Cl atom and one of the O atoms of the SO2 group of an adjacent molecule, with a C4–Cl1···O4i separation of 3.018 (2) Å (Fig. 2 and Table 1). Symmetry code (i): x - 1, y, z. The crystal structure is also stabilized by intermolecular C–H···O hydrogen bonding interactions (Table 1).

Experimental

(R)-2-(2-Chlorophenyl)-2-hydroxyacetic acid and (R)-methyl-2- (2-chlorophenyl)-2-hydroxyacetate were prepared using the established literature procedures (Bousquet et al., 2003, and Sun et al., 2007). A three-necked round-bottomed flask, which was equipped with a magnetic stir bar, was charged with dichloromethane (50 ml), (R)-methyl-2- (2-chlorophenyl)-2-hydroxyacetate (4.5 g), triethylamine (4.3 g), and 4,4-dimethylaminopyridine (275 mg). 3-Nitrobenzenesulfonyl chloride (5.5 g) and dichloromethane (50 ml) were added via syringe. The mixture was stirred at room temperature for 3 h. The reaction mixture was quenched with water, and washed with 1 N HCl (30 ml) twice. The organic layer was dried over anhydrous sodium sulfate and filtered. After concentration under reduced pressure, the residue was purified by silica gel column chromatography with a mixture of petroleum ether and ethyl acetate (4:1 v/v) as eluent to give the title compound (yield, 54%). 1H NMR (400 MHz, CDCl3): 8.648 (s, 1H), 8.432 (d, J = 8.0 Hz, 1H), 8.208 (d, J = 8.0 Hz, 1H), 7.704 (t, J = 8.0 Hz, 1H), 7.376 (d, J = 8.0 Hz, 1H), 7.319 - 7.206 (m, 3H), 6.394 (s, 1H), 3.765 (s, 3H) p.p.m.. Well shaped colorless crystals were obtained by slow evaporation of a solution in petroleum ether and ethyl acetate at room temperature for a few days.

Refinement

All hydrogen atoms were fixed geometrically (C—H bond fixed at 0.93 and 0.96 Å for aromatic and methyl H atoms, respectively) with Uiso(H) = 1.2 (1.5 for methyl groups) times Ueq(C).

Figures

Fig. 1.

Fig. 1.

A view of the compound with the atomic numbering scheme. Displacement ellipsoids are drawn at the 30% probability level.

Fig. 2.

Fig. 2.

A view of the C—Cl···O interaction (dashed lines) in the crystal structure of the title compound. Symmetry code (i): x - 1, y, z.

Fig. 3.

Fig. 3.

The packing of the compound, viewed down the a axis.

Crystal data

C15H12ClNO7S F(000) = 792
Mr = 385.77 Dx = 1.559 Mg m3
Orthorhombic, P212121 Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2ab Cell parameters from 1814 reflections
a = 7.5791 (3) Å θ = 3.3–26.3°
b = 11.0242 (5) Å µ = 0.40 mm1
c = 19.6736 (7) Å T = 293 K
V = 1643.80 (11) Å3 Prism, colourless
Z = 4 0.30 × 0.25 × 0.22 mm

Data collection

Agilent Xcalibur Eos Gemini diffractometer 3153 independent reflections
Radiation source: fine-focus sealed tube 2680 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.023
Detector resolution: 13.6612 pixels mm-1 θmax = 26.4°, θmin = 3.3°
ω scans h = −9→9
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011) k = −13→12
Tmin = 0.890, Tmax = 0.918 l = −24→15
5654 measured reflections

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.039 H-atom parameters constrained
wR(F2) = 0.086 w = 1/[σ2(Fo2) + (0.0393P)2 + 0.1718P] where P = (Fo2 + 2Fc2)/3
S = 1.02 (Δ/σ)max < 0.001
3153 reflections Δρmax = 0.21 e Å3
227 parameters Δρmin = −0.21 e Å3
0 restraints Absolute structure: Flack (1983), 1209 Friedel pairs
Primary atom site location: structure-invariant direct methods Flack parameter: 0.07 (7)

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
S1 0.47477 (9) 0.03812 (6) 0.23919 (4) 0.03772 (18)
Cl1 −0.05655 (10) 0.08212 (8) 0.36889 (4) 0.0513 (2)
N1 0.2766 (4) 0.3236 (3) 0.04654 (14) 0.0554 (7)
O7 0.1312 (4) 0.2781 (3) 0.05356 (13) 0.0763 (8)
O6 0.3113 (4) 0.4007 (2) 0.00436 (14) 0.0820 (8)
O5 0.4263 (3) −0.06820 (17) 0.20270 (10) 0.0474 (5)
O4 0.6140 (3) 0.0334 (2) 0.28718 (11) 0.0540 (6)
O2 0.1443 (3) 0.36269 (18) 0.33486 (10) 0.0449 (5)
O1 0.0857 (3) 0.2602 (2) 0.23895 (10) 0.0544 (6)
O3 0.2979 (2) 0.07757 (16) 0.27557 (9) 0.0342 (4)
C10 0.3826 (4) 0.1918 (3) 0.13767 (14) 0.0400 (7)
H1A 0.2728 0.1541 0.1383 0.048*
C11 0.4194 (4) 0.2837 (3) 0.09275 (14) 0.0417 (7)
C12 0.5830 (4) 0.3385 (3) 0.08930 (16) 0.0496 (8)
H3 0.6055 0.3984 0.0571 0.060*
C13 0.7118 (4) 0.3032 (3) 0.13422 (17) 0.0504 (8)
H4 0.8222 0.3399 0.1327 0.061*
C14 0.6791 (4) 0.2137 (3) 0.18141 (16) 0.0442 (7)
H5 0.7656 0.1913 0.2125 0.053*
C9 0.5149 (4) 0.1576 (2) 0.18190 (13) 0.0369 (6)
C1 0.1619 (4) 0.2713 (3) 0.29162 (14) 0.0371 (6)
C15 0.0212 (4) 0.4558 (3) 0.31462 (17) 0.0591 (9)
H8A 0.0540 0.4868 0.2708 0.089*
H8B 0.0231 0.5204 0.3473 0.089*
H8C −0.0954 0.4221 0.3123 0.089*
C2 0.3017 (3) 0.1846 (2) 0.31890 (13) 0.0336 (6)
H9 0.4171 0.2235 0.3133 0.040*
C3 0.2823 (4) 0.1498 (2) 0.39238 (14) 0.0352 (6)
C8 0.4258 (4) 0.1657 (3) 0.43647 (15) 0.0473 (7)
H11 0.5314 0.1963 0.4196 0.057*
C7 0.4125 (5) 0.1367 (3) 0.50432 (17) 0.0584 (9)
H12 0.5084 0.1482 0.5331 0.070*
C6 0.2564 (5) 0.0905 (3) 0.52935 (15) 0.0588 (10)
H13 0.2472 0.0717 0.5753 0.071*
C5 0.1147 (5) 0.0719 (3) 0.48751 (15) 0.0495 (8)
H14 0.0108 0.0391 0.5046 0.059*
C4 0.1279 (4) 0.1026 (3) 0.41929 (13) 0.0378 (7)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S1 0.0318 (3) 0.0408 (4) 0.0406 (4) 0.0007 (3) 0.0028 (3) 0.0023 (3)
Cl1 0.0389 (4) 0.0714 (5) 0.0437 (4) −0.0063 (4) −0.0013 (3) 0.0053 (4)
N1 0.069 (2) 0.0531 (17) 0.0436 (15) 0.0037 (16) −0.0046 (15) 0.0024 (14)
O7 0.0629 (16) 0.100 (2) 0.0655 (16) −0.0087 (15) −0.0233 (14) 0.0133 (16)
O6 0.104 (2) 0.0721 (18) 0.0705 (16) 0.0062 (17) −0.0065 (17) 0.0295 (16)
O5 0.0533 (13) 0.0350 (11) 0.0539 (12) 0.0010 (9) 0.0129 (11) −0.0059 (9)
O4 0.0383 (11) 0.0687 (14) 0.0548 (13) 0.0030 (11) −0.0034 (10) 0.0141 (12)
O2 0.0473 (12) 0.0420 (11) 0.0456 (11) 0.0095 (9) 0.0025 (10) 0.0033 (10)
O1 0.0526 (13) 0.0699 (15) 0.0407 (11) 0.0089 (11) −0.0095 (11) 0.0048 (11)
O3 0.0314 (9) 0.0376 (10) 0.0338 (9) −0.0052 (8) 0.0008 (8) −0.0048 (8)
C10 0.0378 (15) 0.0438 (17) 0.0384 (15) −0.0057 (13) −0.0006 (13) −0.0064 (14)
C11 0.0507 (18) 0.0399 (16) 0.0345 (14) 0.0000 (14) −0.0008 (14) −0.0044 (13)
C12 0.064 (2) 0.0359 (16) 0.0491 (18) −0.0059 (15) 0.0150 (18) 0.0029 (14)
C13 0.0412 (17) 0.0444 (18) 0.066 (2) −0.0113 (14) 0.0076 (17) −0.0015 (17)
C14 0.0352 (16) 0.0423 (16) 0.0551 (18) −0.0029 (13) 0.0016 (15) −0.0037 (15)
C9 0.0364 (15) 0.0370 (14) 0.0373 (14) −0.0026 (12) 0.0047 (13) −0.0016 (12)
C1 0.0303 (15) 0.0449 (16) 0.0361 (14) −0.0003 (12) 0.0022 (13) 0.0069 (14)
C15 0.056 (2) 0.056 (2) 0.066 (2) 0.0220 (17) 0.0167 (18) 0.0188 (18)
C2 0.0305 (14) 0.0344 (14) 0.0360 (14) −0.0042 (12) −0.0024 (13) −0.0030 (12)
C3 0.0426 (15) 0.0288 (14) 0.0342 (14) 0.0039 (12) −0.0077 (13) −0.0058 (12)
C8 0.0567 (19) 0.0361 (16) 0.0493 (17) −0.0013 (14) −0.0122 (17) −0.0049 (14)
C7 0.080 (3) 0.0479 (19) 0.0473 (18) 0.0004 (19) −0.0303 (19) −0.0086 (16)
C6 0.094 (3) 0.0486 (19) 0.0340 (16) 0.0087 (19) −0.0082 (19) −0.0031 (16)
C5 0.066 (2) 0.0449 (18) 0.0378 (15) 0.0056 (16) 0.0015 (15) 0.0010 (14)
C4 0.0425 (16) 0.0377 (15) 0.0332 (14) 0.0062 (12) −0.0016 (13) −0.0024 (13)

Geometric parameters (Å, º)

S1—O4 1.417 (2) C13—H4 0.9300
S1—O4 1.417 (2) C14—C9 1.390 (4)
S1—O5 1.423 (2) C14—H5 0.9300
S1—O3 1.5809 (18) C1—C2 1.524 (4)
S1—C9 1.760 (3) C15—H8A 0.9600
Cl1—C4 1.728 (3) C15—H8B 0.9600
N1—O6 1.217 (3) C15—H8C 0.9600
N1—O7 1.218 (4) C2—C3 1.503 (4)
N1—C11 1.480 (4) C2—H9 0.9800
O2—C1 1.326 (3) C3—C4 1.386 (4)
O2—C15 1.443 (3) C3—C8 1.402 (4)
O1—C1 1.192 (3) C8—C7 1.376 (4)
O3—C2 1.456 (3) C8—H11 0.9300
C10—C11 1.373 (4) C7—C6 1.379 (5)
C10—C9 1.380 (4) C7—H12 0.9300
C10—H1A 0.9300 C6—C5 1.368 (4)
C11—C12 1.381 (4) C6—H13 0.9300
C12—C13 1.374 (4) C5—C4 1.388 (4)
C12—H3 0.9300 C5—H14 0.9300
C13—C14 1.377 (4)
O4—S1—O5 119.91 (14) O1—C1—C2 125.3 (3)
O4—S1—O5 119.91 (14) O2—C1—C2 108.7 (2)
O4—S1—O3 109.87 (11) O2—C15—H8A 109.5
O4—S1—O3 109.87 (11) O2—C15—H8B 109.5
O5—S1—O3 103.66 (11) H8A—C15—H8B 109.5
O4—S1—C9 108.98 (13) O2—C15—H8C 109.5
O4—S1—C9 108.98 (13) H8A—C15—H8C 109.5
O5—S1—C9 109.75 (12) H8B—C15—H8C 109.5
O3—S1—C9 103.33 (12) O3—C2—C3 110.7 (2)
O6—N1—O7 124.1 (3) O3—C2—C1 106.7 (2)
O6—N1—C11 117.9 (3) C3—C2—C1 115.5 (2)
O7—N1—C11 118.0 (3) O3—C2—H9 107.9
C1—O2—C15 115.4 (2) C3—C2—H9 107.9
C2—O3—S1 118.10 (15) C1—C2—H9 107.9
C11—C10—C9 117.4 (3) C4—C3—C8 117.7 (3)
C11—C10—H1A 121.3 C4—C3—C2 123.1 (2)
C9—C10—H1A 121.3 C8—C3—C2 119.2 (3)
C10—C11—C12 122.5 (3) C7—C8—C3 121.0 (3)
C10—C11—N1 117.7 (3) C7—C8—H11 119.5
C12—C11—N1 119.8 (3) C3—C8—H11 119.5
C13—C12—C11 118.8 (3) C8—C7—C6 119.6 (3)
C13—C12—H3 120.6 C8—C7—H12 120.2
C11—C12—H3 120.6 C6—C7—H12 120.2
C12—C13—C14 120.6 (3) C5—C6—C7 120.9 (3)
C12—C13—H4 119.7 C5—C6—H13 119.5
C14—C13—H4 119.7 C7—C6—H13 119.5
C13—C14—C9 119.0 (3) C6—C5—C4 119.3 (3)
C13—C14—H5 120.5 C6—C5—H14 120.4
C9—C14—H5 120.5 C4—C5—H14 120.4
C10—C9—C14 121.6 (3) C3—C4—C5 121.4 (3)
C10—C9—S1 118.9 (2) C3—C4—Cl1 120.9 (2)
C14—C9—S1 119.5 (2) C5—C4—Cl1 117.7 (2)
O1—C1—O2 125.9 (3)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
C14—H5···O4 0.93 2.55 2.920 (4) 104
C14—H5···O1i 0.93 2.60 3.323 (4) 135
C15—H8C···O5ii 0.96 2.53 3.419 (4) 155
C4—Cl1···O4iii 1.73 (1) 3.02 (1) 4.744 (4) 176 (1)

Symmetry codes: (i) x+1, y, z; (ii) −x, y+1/2, −z+1/2; (iii) x−1, y, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: ZL2477).

References

  1. Agilent (2011). CrysAlis PRO. Agilent Technologies, Yarnton, England.
  2. Andersen, D., et al. (2007). J. Org. Chem. 72, 9648–9655. [DOI] [PubMed]
  3. Bianchi, R., Forni, A. & Pilati, T. (2004). Acta Cryst. B60, 559–568. [DOI] [PubMed]
  4. Bousquet, A. & Musolino, A. (1999). WO Patent No. 9918110 A1.
  5. Bousquet, A. & Musolino, A. (2003). US Patent No. 6573381 B1.
  6. Castaldi, G., Barreca, G. & Bologna, A. (2003). WO Patent No. 03093276.
  7. Ema, T., Okita, N., Ide, S. & Sakai, T. (2007). Org. Biomol. Chem. 5, 1175–1176. [DOI] [PubMed]
  8. Flack, H. D. (1983). Acta Cryst. A39, 876–881.
  9. Fourmigue, M. (2009). Curr. Opin. Solid State Mater. Sci. 13, 36–45.
  10. Metrangolo, P., Neukirch, H., Pilati, T. & Resnati, G. (2005). Acc. Chem. Res. 38, 386–395. [DOI] [PubMed]
  11. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  12. Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]
  13. Sun, Y., Wang, X.-Y., Zhu, J. & Su, W. (2007). Acta Cryst. E63, o2378–o2379.
  14. Zhu, S. F., Cai, Y., Mao, H. X., Xie, J. H. & Zhou, Q. L. (2010). Nat. Chem. 2, 546–551. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812020016/zl2477sup1.cif

e-68-o1689-sup1.cif (17.3KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812020016/zl2477Isup2.hkl

e-68-o1689-Isup2.hkl (154.7KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812020016/zl2477Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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