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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 May 12;68(Pt 6):o1693–o1694. doi: 10.1107/S1600536812020430

4-Cyano­pyridinium dihydrogen phosphate–isonicotinonitrile–phospho­ric acid (1/1/1)

Ying-Chun Wang a,*
PMCID: PMC3379289  PMID: 22719487

Abstract

The asymmetric unit of the title compound, C6H5N2 +·H2PO4 ·C6H4N2·H3PO4, contains one 4-cyano­pyridinium cation, one H2PO4 anion, one independent isonicotinonitrile mol­ecule and one independent H3PO4 mol­ecule. The dihedral angle between the mean planes of the separate protonated and unprotonated pyridine rings is 9.93 (8)°. In the crystal, N—H⋯O and O—H⋯N hydrogen bonds and weak C—H⋯O and C—H⋯N inter­molecular inter­actions connect the organic mol­ecules into a two-dimensional network parallel to the ac plane. O—H⋯O hydrogen-bonding inter­actions involving the H2PO4 anions and H3PO4 mol­ecules provide additional support from the inorganic groups Weak π–π stacking inter­actions between the pyridine rings of neighbouring organic mol­ecules [centroid–centroid distances = 3.711 (4) and 3.784 (2) Å] further link the layers into a three-dimensional network.

Related literature  

For the properties of related compounds, see: Chen et al. (2001); Huang et al. (1999); Zhang et al. (2001). For related structures, see: Wang et al. (2002); Xue et al. (2002); Ye et al. (2008).graphic file with name e-68-o1693-scheme1.jpg

Experimental  

Crystal data  

  • C6H5N2 +·H2O4P·C6H4N2·H3O4P

  • M r = 404.21

  • Triclinic, Inline graphic

  • a = 8.1040 (5) Å

  • b = 8.8872 (9) Å

  • c = 12.1606 (8) Å

  • α = 81.491 (1)°

  • β = 82.009 (1)°

  • γ = 79.133 (1)°

  • V = 845.07 (11) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.31 mm−1

  • T = 173 K

  • 0.10 × 0.05 × 0.05 mm

Data collection  

  • Rigaku Mercury2 diffractometer

  • Absorption correction: multi-scan (CrystalClear; Rigaku, 2005) T min = 0.910, T max = 1.000

  • 8963 measured reflections

  • 3798 independent reflections

  • 3306 reflections with I > 2σ(I)

  • R int = 0.023

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.030

  • wR(F 2) = 0.096

  • S = 1.14

  • 3798 reflections

  • 235 parameters

  • 6 restraints

  • H-atom parameters constrained

  • Δρmax = 0.34 e Å−3

  • Δρmin = −0.40 e Å−3

Data collection: CrystalClear (Rigaku, 2005); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812020430/jj2136sup1.cif

e-68-o1693-sup1.cif (24.4KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812020430/jj2136Isup2.hkl

e-68-o1693-Isup2.hkl (186.2KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812020430/jj2136Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O2—H2⋯O5i 0.82 1.75 2.5576 (14) 169
O4—H4⋯O3ii 0.82 1.74 2.5611 (14) 176
O6—H6⋯N1iii 0.82 1.86 2.6749 (17) 178
O7—H7⋯O1iv 0.82 1.70 2.5150 (15) 173
O8—H8⋯O3ii 0.82 1.76 2.5795 (15) 177
N3—H3⋯O1 0.90 1.77 2.6466 (16) 162
C1—H1A⋯O2v 0.95 2.44 3.2549 (19) 144
C8—H8A⋯N2vi 0.95 2.51 3.273 (2) 138
C10—H10A⋯O7vii 0.95 2.31 3.1631 (19) 149
C11—H11A⋯O1v 0.95 2.52 3.3321 (19) 144

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic; (v) Inline graphic; (vi) Inline graphic; (vii) Inline graphic.

Acknowledgments

This work was supported by a start-up grant from Southeast University, China.

supplementary crystallographic information

Comment

Simple organic salts containing strong intrermolecular H-bonds have attracted attention as materials which display ferroelectric-paraelectric phase transitions (Chen et al., 2001; Huang, et al. 1999; Zhang, et al. 2001). In an effort to obtain phase transition crystals of organic salts, various organic molecules have been studied with a series of new crystal materials (Wang et al., 2002; Xue, et al. 2002; Ye et al., 2008). Herewith, we present the synthesis and crystal structure of the title compound, C6H5N2+.H2PO4-.C6H4N2.H3PO4,(I).

The asymmetric unit of (I) is comprised of one 4-cyanopyridinium cation, one H2PO4- anion, one independent isonicotinonitrile molecule and one independent H3PO4 molecule (Fig. 1). The two separate pyridine rings in the asymmetric unit are almost planar with the largest deviation from the least-squares plane being 0.001 (1) Å and 0.003 (1) Å, respectively. The dihedral angle between the mean planes of the two separate pyridine rings is 9.93 (8)°. Bond lengths and angles in each of these units are in normal ranges.

In the crystal N—H···O and O—H···N hydrogen bonds and weak C—H···O and C—H···N intermolecular interactions bring the organic molecules into a 2D network (Fig. 2). Also, O—H···O hydrogen bonding interactions involving the H2PO4- anions and H3PO4 molecules provide additional support for the 2D network from the inorganic groups (Table 1, Fig. 3). In addition, weak π–π stacking interactions between the pyridine rings of neighbouring organic molecules further link the layers into a 3D network (Cg1···Cg2 = 3.711 (4) Å and Cg1···Cg2 = 3.784 (2) Å, where Cg1 and Cg2 are the centroids of the pyridine rings, N1/C1/C2/C3/C4/C5 and N3/C7/C8/C9/C10/C11, respectively).

Experimental

Isonicotinonitrile (10 mmol and stirred at 60°C for 2 h. The precipitate was then filtrated. Colourless crystals suitable for X-ray diffraction were obtained by slow evaporation of the solution.

Refinement

H2, H3, H4, H6 and H8 were refined freely. In the last stages of the refinement these atoms were restrained with N3—H3 = 0.90 (2)Å and O2—H2, O4—H4, O6–H6, O8—H8 all = 0.82 (2)Å with Uiso(H) = 1.2Ueq(N) and Uiso(H)=1.5Ueq(O). All the remaining H atoms attached to C atoms were placed in calculated positions and then refined using the riding model with C—H lengths of 0.95 Å (CH). The isotropic displcement parameers for these atoms were set to 1.2 (CH) times Ueq of the parent atom.

Figures

Fig. 1.

Fig. 1.

Molecular structure of the title compound showing the atom labeling scheme and 50% probability displacement ellipsoids for one cation-anion unit and bimolecular unit in the asymmetric unit.

Fig. 2.

Fig. 2.

Crystal packing of the title compound viewed along the b axis showing O—H···O, O—H···N, hydrogen bonds (dotted lines), weak C—H···O, C—H···N intermolecular interactions (dotted lines) and weak π—π stacking interactions (dashed lines).

Fig. 3.

Fig. 3.

Crystal packing of the title compound viewed along the c axis showing the O—H···O hydrogen bonds (dotted line).

Crystal data

C6H5N2+·H2O4P·C6H4N2·H3O4P Z = 2
Mr = 404.21 F(000) = 416
Triclinic, P1 Dx = 1.589 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 8.1040 (5) Å Cell parameters from 3798 reflections
b = 8.8872 (9) Å θ = 2.6–27.5°
c = 12.1606 (8) Å µ = 0.31 mm1
α = 81.491 (1)° T = 173 K
β = 82.009 (1)° Block, colorless
γ = 79.133 (1)° 0.10 × 0.05 × 0.05 mm
V = 845.07 (11) Å3

Data collection

Rigaku Mercury2 diffractometer 3798 independent reflections
Radiation source: fine-focus sealed tube 3306 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.023
Detector resolution: 13.6612 pixels mm-1 θmax = 27.5°, θmin = 2.6°
CCD profile fitting scans h = −10→10
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005) k = −11→11
Tmin = 0.910, Tmax = 1.000 l = −15→15
8963 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.030 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.096 H-atom parameters constrained
S = 1.14 w = 1/[σ2(Fo2) + (0.0597P)2] where P = (Fo2 + 2Fc2)/3
3798 reflections (Δ/σ)max = 0.001
235 parameters Δρmax = 0.34 e Å3
6 restraints Δρmin = −0.40 e Å3

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
N1 1.02100 (16) 0.12068 (15) 0.59294 (11) 0.0141 (3)
N2 0.39938 (18) 0.32104 (18) 0.46853 (13) 0.0273 (4)
C4 0.83067 (19) 0.30110 (18) 0.48280 (13) 0.0158 (3)
H4A 0.8118 0.3903 0.4294 0.019*
C5 0.98861 (19) 0.24689 (18) 0.51769 (13) 0.0155 (3)
H5A 1.0784 0.3010 0.4873 0.019*
C6 0.5317 (2) 0.27525 (19) 0.49470 (14) 0.0188 (3)
C2 0.73050 (19) 0.09074 (18) 0.60593 (13) 0.0152 (3)
H2A 0.6429 0.0347 0.6378 0.018*
C3 0.69979 (19) 0.22094 (18) 0.52833 (13) 0.0142 (3)
C1 0.89403 (19) 0.04504 (18) 0.63541 (13) 0.0146 (3)
H1A 0.9166 −0.0442 0.6883 0.018*
N3 0.50667 (15) 0.28063 (14) 0.85938 (11) 0.0138 (3)
H3 0.4049 0.2582 0.8897 0.017*
N4 1.12529 (17) 0.40818 (17) 0.74487 (12) 0.0216 (3)
C11 0.63720 (19) 0.18015 (18) 0.89738 (13) 0.0146 (3)
H11A 0.6178 0.0886 0.9447 0.017*
C8 0.6851 (2) 0.44610 (18) 0.75916 (13) 0.0158 (3)
H8A 0.7008 0.5377 0.7107 0.019*
C9 0.82275 (18) 0.34390 (17) 0.79861 (12) 0.0128 (3)
C10 0.79957 (19) 0.20896 (18) 0.86819 (13) 0.0149 (3)
H10A 0.8932 0.1385 0.8949 0.018*
C7 0.52563 (19) 0.41132 (18) 0.79207 (13) 0.0162 (3)
H7A 0.4294 0.4798 0.7671 0.019*
C12 0.9921 (2) 0.37991 (18) 0.76837 (13) 0.0158 (3)
P1 0.15691 (4) 0.29108 (4) 1.05923 (3) 0.00975 (11)
O1 0.24327 (13) 0.17698 (12) 0.97909 (9) 0.0140 (2)
O2 0.21239 (13) 0.23350 (12) 1.17856 (9) 0.0145 (2)
H2 0.3149 0.2034 1.1716 0.022*
O3 −0.03370 (12) 0.32218 (12) 1.06993 (9) 0.0131 (2)
O4 0.22876 (13) 0.44436 (12) 1.01948 (9) 0.0140 (2)
H4 0.1635 0.5162 0.9902 0.021*
P2 0.31115 (5) 0.91637 (4) 0.78249 (3) 0.01113 (11)
O5 0.47632 (13) 0.89331 (13) 0.82709 (9) 0.0184 (3)
O6 0.32346 (13) 1.01043 (13) 0.66430 (9) 0.0163 (2)
H6 0.2317 1.0444 0.6412 0.024*
O7 0.16276 (13) 1.00119 (12) 0.85896 (9) 0.0153 (2)
H7 0.1963 1.0539 0.8984 0.023*
O8 0.24974 (14) 0.76550 (12) 0.76809 (9) 0.0167 (2)
H8 0.1813 0.7401 0.8206 0.025*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
N1 0.0147 (6) 0.0160 (6) 0.0114 (7) −0.0017 (5) −0.0025 (5) −0.0017 (5)
N2 0.0158 (7) 0.0357 (9) 0.0274 (9) −0.0039 (6) −0.0062 (6) 0.0085 (7)
C4 0.0170 (7) 0.0155 (7) 0.0138 (8) −0.0025 (6) −0.0025 (6) 0.0015 (6)
C5 0.0148 (7) 0.0173 (8) 0.0143 (8) −0.0042 (6) −0.0015 (6) −0.0006 (6)
C6 0.0162 (8) 0.0215 (8) 0.0173 (8) −0.0039 (6) −0.0015 (6) 0.0027 (6)
C2 0.0154 (7) 0.0172 (8) 0.0134 (8) −0.0046 (6) −0.0009 (6) −0.0013 (6)
C3 0.0129 (7) 0.0169 (7) 0.0128 (8) −0.0006 (6) −0.0032 (6) −0.0029 (6)
C1 0.0175 (8) 0.0144 (7) 0.0113 (7) −0.0017 (6) −0.0024 (6) −0.0006 (6)
N3 0.0107 (6) 0.0164 (6) 0.0145 (7) −0.0030 (5) 0.0010 (5) −0.0043 (5)
N4 0.0176 (7) 0.0241 (8) 0.0239 (8) −0.0074 (6) −0.0024 (6) −0.0010 (6)
C11 0.0155 (7) 0.0148 (7) 0.0130 (8) −0.0034 (6) −0.0005 (6) −0.0004 (6)
C8 0.0185 (8) 0.0148 (7) 0.0149 (8) −0.0049 (6) −0.0039 (6) 0.0000 (6)
C9 0.0131 (7) 0.0159 (7) 0.0111 (7) −0.0038 (6) −0.0012 (6) −0.0057 (6)
C10 0.0131 (7) 0.0147 (7) 0.0160 (8) 0.0004 (6) −0.0025 (6) −0.0013 (6)
C7 0.0147 (7) 0.0155 (7) 0.0181 (8) −0.0001 (6) −0.0053 (6) −0.0013 (6)
C12 0.0178 (8) 0.0167 (8) 0.0136 (8) −0.0044 (6) −0.0023 (6) −0.0019 (6)
P1 0.00801 (19) 0.00916 (19) 0.0115 (2) −0.00048 (14) −0.00172 (14) −0.00001 (14)
O1 0.0128 (5) 0.0137 (5) 0.0159 (6) −0.0019 (4) −0.0008 (4) −0.0043 (4)
O2 0.0110 (5) 0.0181 (6) 0.0123 (6) 0.0013 (4) −0.0024 (4) 0.0014 (4)
O3 0.0088 (5) 0.0123 (5) 0.0169 (6) −0.0009 (4) −0.0020 (4) 0.0019 (4)
O4 0.0108 (5) 0.0093 (5) 0.0213 (6) −0.0010 (4) −0.0052 (4) 0.0021 (4)
P2 0.00841 (19) 0.0120 (2) 0.0126 (2) −0.00073 (14) −0.00240 (14) −0.00054 (15)
O5 0.0098 (5) 0.0251 (6) 0.0198 (6) 0.0011 (4) −0.0054 (4) −0.0024 (5)
O6 0.0110 (5) 0.0196 (6) 0.0164 (6) −0.0024 (4) −0.0037 (4) 0.0049 (4)
O7 0.0109 (5) 0.0162 (5) 0.0206 (6) −0.0022 (4) −0.0016 (4) −0.0082 (4)
O8 0.0186 (6) 0.0138 (5) 0.0173 (6) −0.0051 (4) 0.0047 (4) −0.0037 (4)

Geometric parameters (Å, º)

N1—C1 1.337 (2) C8—C9 1.392 (2)
N1—C5 1.3477 (19) C8—H8A 0.9500
N2—C6 1.144 (2) C9—C10 1.389 (2)
C4—C5 1.381 (2) C9—C12 1.453 (2)
C4—C3 1.394 (2) C10—H10A 0.9500
C4—H4A 0.9500 C7—H7A 0.9500
C5—H5A 0.9500 P1—O3 1.5077 (10)
C6—C3 1.450 (2) P1—O1 1.5176 (11)
C2—C3 1.387 (2) P1—O2 1.5635 (11)
C2—C1 1.391 (2) P1—O4 1.5666 (11)
C2—H2A 0.9500 O2—H2 0.8195
C1—H1A 0.9500 O4—H4 0.8198
N3—C11 1.3370 (19) P2—O5 1.4811 (11)
N3—C7 1.339 (2) P2—O6 1.5526 (11)
N3—H3 0.9008 P2—O8 1.5560 (11)
N4—C12 1.142 (2) P2—O7 1.5601 (11)
C11—C10 1.376 (2) O6—H6 0.8196
C11—H11A 0.9500 O7—H7 0.8208
C8—C7 1.377 (2) O8—H8 0.8198
C1—N1—C5 118.22 (13) C10—C9—C12 119.62 (14)
C5—C4—C3 117.97 (14) C8—C9—C12 119.72 (14)
C5—C4—H4A 121.0 C11—C10—C9 118.16 (14)
C3—C4—H4A 121.0 C11—C10—H10A 120.9
N1—C5—C4 122.96 (14) C9—C10—H10A 120.9
N1—C5—H5A 118.5 N3—C7—C8 119.76 (14)
C4—C5—H5A 118.5 N3—C7—H7A 120.1
N2—C6—C3 178.62 (18) C8—C7—H7A 120.1
C3—C2—C1 117.73 (14) N4—C12—C9 179.83 (17)
C3—C2—H2A 121.1 O3—P1—O1 115.74 (6)
C1—C2—H2A 121.1 O3—P1—O2 108.01 (6)
C2—C3—C4 119.98 (14) O1—P1—O2 109.65 (6)
C2—C3—C6 120.42 (14) O3—P1—O4 110.60 (6)
C4—C3—C6 119.60 (14) O1—P1—O4 106.72 (6)
N1—C1—C2 123.16 (14) O2—P1—O4 105.66 (6)
N1—C1—H1A 118.4 P1—O2—H2 107.9
C2—C1—H1A 118.4 P1—O4—H4 115.8
C11—N3—C7 122.80 (13) O5—P2—O6 109.29 (6)
C11—N3—H3 113.8 O5—P2—O8 115.10 (6)
C7—N3—H3 123.0 O6—P2—O8 105.90 (6)
N3—C11—C10 120.21 (14) O5—P2—O7 113.15 (6)
N3—C11—H11A 119.9 O6—P2—O7 109.13 (6)
C10—C11—H11A 119.9 O8—P2—O7 103.84 (6)
C7—C8—C9 118.43 (15) P2—O6—H6 114.0
C7—C8—H8A 120.8 P2—O7—H7 111.9
C9—C8—H8A 120.8 P2—O8—H8 112.0
C10—C9—C8 120.65 (14)
C1—N1—C5—C4 0.0 (2) C7—N3—C11—C10 0.3 (2)
C3—C4—C5—N1 0.2 (2) C7—C8—C9—C10 0.9 (2)
C1—C2—C3—C4 0.0 (2) C7—C8—C9—C12 −177.97 (14)
C1—C2—C3—C6 −179.54 (14) N3—C11—C10—C9 −0.2 (2)
C5—C4—C3—C2 −0.2 (2) C8—C9—C10—C11 −0.5 (2)
C5—C4—C3—C6 179.34 (14) C12—C9—C10—C11 178.46 (14)
C5—N1—C1—C2 −0.2 (2) C11—N3—C7—C8 0.2 (2)
C3—C2—C1—N1 0.2 (2) C9—C8—C7—N3 −0.8 (2)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
O2—H2···O5i 0.82 1.75 2.5576 (14) 169
O4—H4···O3ii 0.82 1.74 2.5611 (14) 176
O6—H6···N1iii 0.82 1.86 2.6749 (17) 178
O7—H7···O1iv 0.82 1.70 2.5150 (15) 173
O8—H8···O3ii 0.82 1.76 2.5795 (15) 177
N3—H3···O1 0.90 1.77 2.6466 (16) 162
C1—H1A···O2v 0.95 2.44 3.2549 (19) 144
C8—H8A···N2vi 0.95 2.51 3.273 (2) 138
C10—H10A···O7vii 0.95 2.31 3.1631 (19) 149
C11—H11A···O1v 0.95 2.52 3.3321 (19) 144

Symmetry codes: (i) −x+1, −y+1, −z+2; (ii) −x, −y+1, −z+2; (iii) x−1, y+1, z; (iv) x, y+1, z; (v) −x+1, −y, −z+2; (vi) −x+1, −y+1, −z+1; (vii) x+1, y−1, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: JJ2136).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812020430/jj2136sup1.cif

e-68-o1693-sup1.cif (24.4KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812020430/jj2136Isup2.hkl

e-68-o1693-Isup2.hkl (186.2KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812020430/jj2136Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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