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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 May 12;68(Pt 6):o1696. doi: 10.1107/S1600536812019770

4-Chloro-2-[(4-chloro­benzyl­idene)amino]­phenol

Kürşat Efil a,*, Fatih Şen b, Yunus Bekdemir a, Orhan Büyükgüngör c
PMCID: PMC3379291  PMID: 22719489

Abstract

In the title Schiff base compound, C13H9Cl2NO, the mol­ecule displays an E conformation about the imine C=N double bond, with a dihedral angle of 8.09 (11)° between the two benzene rings. In the crystal, mol­ecules are linked by a single O—H⋯O hydrogen bond, giving one-dimensional chains which extend along (100).

Related literature  

For related Schiff base compounds and applications, see: Asiri & Khan (2010); Bekircan et al. (2006); Faridbod et al. (2008); Fun et al. (2009); Ghanwate et al. (2008); Jarrahpour et al. (2007); Layer (1963); Shi et al. (2007); Zhao et al. (2010). For related structures, see: Xu et al. (2009); Zhou et al. (2009).graphic file with name e-68-o1696-scheme1.jpg

Experimental  

Crystal data  

  • C13H9Cl2NO

  • M r = 266.11

  • Orthorhombic, Inline graphic

  • a = 4.6615 (2) Å

  • b = 10.5375 (5) Å

  • c = 25.2153 (15) Å

  • V = 1238.59 (11) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.51 mm−1

  • T = 296 K

  • 0.53 × 0.41 × 0.31 mm

Data collection  

  • Stoe IPDS 2 Image-Plate diffractometer

  • Absorption correction: integration (X-RED32; Stoe & Cie, 2002) T min = 0.815, T max = 0.882

  • 2562 measured reflections

  • 2562 independent reflections

  • 1910 reflections with I > 2σ(I)

  • R int = 0.037

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.033

  • wR(F 2) = 0.082

  • S = 0.93

  • 2562 reflections

  • 159 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.21 e Å−3

  • Δρmin = −0.24 e Å−3

  • Absolute structure: Flack (1983), 1024 Friedel pairs

  • Flack parameter: 0.01 (7)

Data collection: X-AREA (Stoe & Cie, 2002); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999) and PLATON (Spek, 2009).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812019770/zs2205sup1.cif

e-68-o1696-sup1.cif (20.4KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812019770/zs2205Isup2.hkl

e-68-o1696-Isup2.hkl (123.3KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812019770/zs2205Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O1—H1⋯O1i 0.86 (3) 2.36 (3) 3.040 (2) 136 (2)

Symmetry code: (i) Inline graphic.

supplementary crystallographic information

Comment

The compounds containing the C═N group, are known as Schiff bases (also imines or azomethines), are generally synthesized by condensation of primary amines with active carbonyl compounds (Asiri & Khan, 2010; Faridbod et al., 2008). The reaction is acid-catalyzed and is usually performed by refluxing the carbonyl compound and amine (Layer, 1963). These compounds show biological activity as antitumor (Zhao, et al., 2010), anticancer (Bekircan, et al., 2006), antifungal (Shi, et al., 2007), antimicrobial (Ghanwate, et al., 2008) or antiviral agents (Jarrahpour, et al., 2007), furthermore they are used as intermediates and ligands in the formation of a complex with some metal ions (Fun et al., 2009). As part of our ongoing study of the structural relationships between the compounds containing Schiff bases, a crystal structure determination of the title compound, C13H9Cl2NO, has been undertaken and the results are presented here.

The structure of the title compound (Fig. 1) is similar to those of analogous derivatives (Xu et al., 2009; Zhou et al., 2009) and displays a trans configuration with respect to the imine C═N with a C8—C7—N1—C1 torsion angle of 179.19 (18)°. The molecule is close to planar, as indicated by the dihedral angle between the two benzene rings [8.09 (11)°]. The crystal packing is stabilized by a single intermolecular O—H···O hydrogen-bonding interaction (Table 1, Fig. 2), giving a one-dimensional chain structure which extends down (100) (Fig. 3). An intramolecular O—H···N interaction is also present.

Experimental

4-Chlorobenzaldehyde (0.141 g; 1 mmol), 2-hydroxy-5-chloroaniline (0.144 g; 1 mmol) and two drops of β-ethoxyethanol as a wetting solvent were mixed in a beaker and then exposed to microwaves in an oven (360 W). It was observed that the reaction was completed within 2 minutes (thin layer chromatography). The resulting solid product was washed with cold ethanol and recrystallized from ethanol, giving the title compound. Yield: 92%, m.p. 396–398 °K.

Refinement

The H-atom of the hydroxy group was located from a difference-Fourier map and both positional and isotropic displacement paramenters were refined. Other H-atoms were positioned geometrically and treated using a riding model, with C—H = 0.93 Å and with the displacement parameters Uiso(H) = 1.2Ueq(C). The absolute structure factor (Flack, 1983), although not significant in this structure, was determined as 0.01 (7), using 1028 Friedel pairs.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound showing the atom- numbering scheme, with displacement ellipsoids drawn at the 50% probability level.

Fig. 2.

Fig. 2.

Part of the crystal structure of the title compound, showing the O—H···N and O—H···O interactions as dashed lines.

Fig. 3.

Fig. 3.

The crystal packing of the title compound viewed along the a axis. The O—H···O and O—H···N interactions are shown as dashed lines.

Crystal data

C13H9Cl2NO Dx = 1.427 Mg m3
Mr = 266.11 Melting point = 396–398 K
Orthorhombic, P212121 Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2ab Cell parameters from 16508 reflections
a = 4.6615 (2) Å θ = 1.6–27.2°
b = 10.5375 (5) Å µ = 0.51 mm1
c = 25.2153 (15) Å T = 296 K
V = 1238.59 (11) Å3 Prism, brown
Z = 4 0.53 × 0.41 × 0.31 mm
F(000) = 544

Data collection

Stoe IPDS 2 CCD diffractometer 2562 independent reflections
Radiation source: fine-focus sealed tube 1910 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.037
rotation method scans θmax = 26.5°, θmin = 1.6°
Absorption correction: integration (X-RED32; Stoe & Cie, 2002) h = −5→5
Tmin = 0.815, Tmax = 0.882 k = −13→13
2562 measured reflections l = −31→31

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.033 H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.082 w = 1/[σ2(Fo2) + (0.0496P)2] where P = (Fo2 + 2Fc2)/3
S = 0.93 (Δ/σ)max < 0.001
2562 reflections Δρmax = 0.21 e Å3
159 parameters Δρmin = −0.24 e Å3
0 restraints Absolute structure: Flack (1983), 1024 Friedel pairs
Primary atom site location: structure-invariant direct methods Flack parameter: 0.01 (7)

Special details

Experimental. IR: 3071, 2911, 1626 (C=N),1586, 1568, 1478, 1423, 1369, 1271, 1238, 1194, 1154, 1082, 1009, 909, 856, 812, 696, 607 cm-1. 1H NMR (CDCl3): δ 8.66 (s, 1H, N=CH), 7.91 (d, J = 8.4 Hz, 2H, Ar), 7.54 (d, J = 8.4 Hz, 2H, Ar), 7.34 (s, 1H, Ar), 7.24 (d, J = 8.6 Hz, 1H, Ar), 7.02 (d, J = 8.6 Hz, 1H, Ar). 13CNMR (CDCl3): δ 156.75 (N=C), 150.94, 138.21, 135.86, 133.87, 130.06, 129.28, 128.77, 125.07, 116.19. Elemental Anal. Calcd for C13H9Cl2NO: C, 58,67; H, 3,41; N, 5,26. Found: C, 57.74; H, 3.42; N, 5.26%.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 −0.1216 (4) 0.47092 (19) 0.57988 (7) 0.0537 (5)
C2 −0.2380 (5) 0.4456 (2) 0.53004 (8) 0.0616 (6)
C3 −0.4413 (6) 0.5255 (3) 0.50863 (9) 0.0769 (6)
H3 −0.5168 0.5082 0.4753 0.092*
C4 −0.5333 (6) 0.6303 (2) 0.53591 (9) 0.0760 (7)
H4 −0.6710 0.6839 0.5213 0.091*
C5 −0.4197 (6) 0.6552 (2) 0.58495 (9) 0.0713 (6)
C6 −0.2162 (5) 0.5778 (2) 0.60712 (8) 0.0628 (6)
H6 −0.1414 0.5968 0.6404 0.075*
C7 0.1973 (5) 0.3864 (2) 0.64196 (7) 0.0561 (5)
H7 0.1415 0.4505 0.6651 0.067*
C8 0.4106 (4) 0.29397 (18) 0.65979 (7) 0.0523 (4)
C9 0.5145 (5) 0.2984 (2) 0.71173 (8) 0.0653 (6)
H9 0.4480 0.3612 0.7346 0.078*
C10 0.7136 (5) 0.2117 (2) 0.72989 (8) 0.0663 (6)
H10 0.7827 0.2163 0.7644 0.080*
C11 0.8069 (5) 0.1196 (2) 0.69631 (8) 0.0606 (5)
C12 0.7106 (5) 0.1122 (2) 0.64475 (8) 0.0634 (6)
H12 0.7792 0.0493 0.6222 0.076*
C13 0.5123 (5) 0.19875 (19) 0.62699 (7) 0.0605 (5)
H13 0.4452 0.1933 0.5923 0.073*
N1 0.0866 (4) 0.38240 (15) 0.59657 (6) 0.0554 (4)
O1 −0.1527 (4) 0.34241 (18) 0.50249 (6) 0.0813 (5)
Cl1 −0.5403 (2) 0.78790 (6) 0.61993 (3) 0.1114 (3)
Cl2 1.05363 (14) 0.00872 (6) 0.71919 (3) 0.0847 (2)
H1 −0.021 (6) 0.303 (2) 0.5193 (9) 0.088 (9)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.0469 (11) 0.0618 (12) 0.0525 (10) −0.0110 (10) 0.0007 (9) 0.0069 (9)
C2 0.0571 (13) 0.0738 (14) 0.0538 (11) −0.0057 (11) 0.0013 (10) 0.0010 (10)
C3 0.0699 (14) 0.1008 (17) 0.0599 (12) −0.0012 (16) −0.0072 (12) 0.0118 (12)
C4 0.0673 (15) 0.0796 (15) 0.0810 (15) 0.0034 (14) 0.0001 (14) 0.0274 (12)
C5 0.0709 (14) 0.0595 (12) 0.0834 (14) −0.0046 (13) 0.0028 (13) 0.0115 (11)
C6 0.0658 (14) 0.0580 (12) 0.0646 (12) −0.0084 (11) −0.0036 (12) −0.0010 (10)
C7 0.0544 (12) 0.0618 (12) 0.0522 (10) −0.0065 (11) 0.0008 (10) −0.0054 (9)
C8 0.0465 (11) 0.0578 (10) 0.0526 (9) −0.0073 (10) −0.0004 (9) −0.0009 (9)
C9 0.0635 (14) 0.0747 (13) 0.0578 (11) 0.0046 (12) −0.0047 (11) −0.0110 (10)
C10 0.0597 (13) 0.0806 (15) 0.0586 (11) 0.0007 (13) −0.0060 (11) −0.0009 (11)
C11 0.0520 (12) 0.0595 (12) 0.0704 (13) −0.0066 (10) 0.0059 (11) 0.0149 (10)
C12 0.0680 (14) 0.0581 (12) 0.0642 (12) −0.0003 (11) 0.0127 (11) −0.0008 (10)
C13 0.0696 (14) 0.0629 (11) 0.0490 (10) −0.0084 (12) 0.0022 (10) 0.0001 (9)
N1 0.0556 (10) 0.0584 (9) 0.0521 (9) −0.0072 (9) −0.0013 (8) 0.0006 (7)
O1 0.0827 (12) 0.1033 (13) 0.0580 (8) 0.0137 (10) −0.0125 (9) −0.0136 (9)
Cl1 0.1263 (7) 0.0703 (4) 0.1377 (6) 0.0207 (5) −0.0080 (6) −0.0116 (4)
Cl2 0.0697 (3) 0.0794 (4) 0.1051 (4) 0.0080 (4) 0.0068 (3) 0.0285 (3)

Geometric parameters (Å, º)

C1—C6 1.391 (3) C7—H7 0.9300
C1—C2 1.395 (3) C8—C13 1.384 (3)
C1—N1 1.411 (3) C8—C9 1.397 (3)
C2—O1 1.350 (3) C9—C10 1.381 (3)
C2—C3 1.378 (3) C9—H9 0.9300
C3—C4 1.370 (3) C10—C11 1.359 (3)
C3—H3 0.9300 C10—H10 0.9300
C4—C5 1.371 (3) C11—C12 1.378 (3)
C4—H4 0.9300 C11—Cl2 1.738 (2)
C5—C6 1.370 (3) C12—C13 1.374 (3)
C5—Cl1 1.746 (2) C12—H12 0.9300
C6—H6 0.9300 C13—H13 0.9300
C7—N1 1.256 (2) O1—H1 0.86 (3)
C7—C8 1.462 (3)
C6—C1—C2 118.48 (19) C13—C8—C9 117.77 (19)
C6—C1—N1 127.32 (18) C13—C8—C7 122.12 (17)
C2—C1—N1 114.19 (18) C9—C8—C7 120.10 (18)
O1—C2—C3 119.6 (2) C10—C9—C8 121.4 (2)
O1—C2—C1 120.2 (2) C10—C9—H9 119.3
C3—C2—C1 120.2 (2) C8—C9—H9 119.3
C4—C3—C2 120.8 (2) C11—C10—C9 118.75 (19)
C4—C3—H3 119.6 C11—C10—H10 120.6
C2—C3—H3 119.6 C9—C10—H10 120.6
C3—C4—C5 119.1 (2) C10—C11—C12 121.6 (2)
C3—C4—H4 120.5 C10—C11—Cl2 119.01 (16)
C5—C4—H4 120.5 C12—C11—Cl2 119.37 (18)
C6—C5—C4 121.5 (2) C13—C12—C11 119.3 (2)
C6—C5—Cl1 119.56 (19) C13—C12—H12 120.4
C4—C5—Cl1 119.0 (2) C11—C12—H12 120.4
C5—C6—C1 120.0 (2) C12—C13—C8 121.13 (18)
C5—C6—H6 120.0 C12—C13—H13 119.4
C1—C6—H6 120.0 C8—C13—H13 119.4
N1—C7—C8 122.50 (19) C7—N1—C1 122.18 (17)
N1—C7—H7 118.8 C2—O1—H1 110.6 (17)
C8—C7—H7 118.8
C6—C1—C2—O1 −179.7 (2) N1—C7—C8—C9 −176.3 (2)
N1—C1—C2—O1 1.0 (3) C13—C8—C9—C10 0.5 (3)
C6—C1—C2—C3 0.2 (3) C7—C8—C9—C10 179.33 (19)
N1—C1—C2—C3 −179.2 (2) C8—C9—C10—C11 −0.7 (3)
O1—C2—C3—C4 179.5 (2) C9—C10—C11—C12 0.9 (3)
C1—C2—C3—C4 −0.4 (4) C9—C10—C11—Cl2 −179.06 (16)
C2—C3—C4—C5 0.2 (4) C10—C11—C12—C13 −1.0 (3)
C3—C4—C5—C6 0.2 (4) Cl2—C11—C12—C13 179.01 (16)
C3—C4—C5—Cl1 −179.31 (19) C11—C12—C13—C8 0.8 (3)
C4—C5—C6—C1 −0.3 (4) C9—C8—C13—C12 −0.6 (3)
Cl1—C5—C6—C1 179.12 (17) C7—C8—C13—C12 −179.35 (19)
C2—C1—C6—C5 0.2 (3) C8—C7—N1—C1 179.19 (18)
N1—C1—C6—C5 179.4 (2) C6—C1—N1—C7 5.9 (3)
N1—C7—C8—C13 2.5 (3) C2—C1—N1—C7 −174.84 (19)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
O1—H1···N1 0.86 (3) 2.18 (2) 2.655 (2) 115 (2)
O1—H1···O1i 0.86 (3) 2.36 (3) 3.040 (2) 136 (2)

Symmetry code: (i) x+1/2, −y+1/2, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: ZS2205).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812019770/zs2205sup1.cif

e-68-o1696-sup1.cif (20.4KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812019770/zs2205Isup2.hkl

e-68-o1696-Isup2.hkl (123.3KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812019770/zs2205Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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