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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 May 19;68(Pt 6):o1787. doi: 10.1107/S1600536812021654

rac-(3S,4Z)-3-Chloro-4-[2-(3-fluoro­benzyl­idene)hydrazinyl­idene]-1-methyl-3,4-dihydro-1H-2λ6,1-benzothia­zine-2,2-dione

Muhammad Shafiq a, M Nawaz Tahir b,*, Islam Ullah Khan c, Saeed Ahmad d
PMCID: PMC3379366  PMID: 22719564

Abstract

In the title compound, C16H13ClFN3O2S, the dihedral angle between the benzene rings is 4.47 (3)°. The conformation of the thia­zine ring is a half-chair and the Cl atom is in an axial orientation. In the crystal, mol­ecules are linked by C—H⋯F inter­actions, generating C(12) chains propagating in [011]. Aromatic π–π stacking inter­actions [centroid–centroid separations = 3.753 (2) and 3.758 (2) Å] also occur.

Related literature  

For a related structure and background references, see: Shafiq et al. (2012). For further synthetic details, see: Shafiq et al. (2011a,b ). For ring conformations, see: Cremer & Pople (1975).graphic file with name e-68-o1787-scheme1.jpg

Experimental  

Crystal data  

  • C16H13ClFN3O2S

  • M r = 365.80

  • Triclinic, Inline graphic

  • a = 7.0072 (3) Å

  • b = 8.9402 (4) Å

  • c = 13.3438 (6) Å

  • α = 98.184 (3)°

  • β = 90.510 (2)°

  • γ = 98.389 (3)°

  • V = 818.19 (6) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.39 mm−1

  • T = 296 K

  • 0.26 × 0.18 × 0.12 mm

Data collection  

  • Bruker Kappa APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2005) T min = 0.930, T max = 0.960

  • 11874 measured reflections

  • 2941 independent reflections

  • 1744 reflections with I > 2σ(I)

  • R int = 0.065

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.050

  • wR(F 2) = 0.120

  • S = 1.00

  • 2941 reflections

  • 218 parameters

  • H-atom parameters constrained

  • Δρmax = 0.33 e Å−3

  • Δρmin = −0.32 e Å−3

Data collection: APEX2 (Bruker, 2009); cell refinement: SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2009); software used to prepare material for publication: WinGX (Farrugia, 1999) and PLATON.

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812021654/hb6778sup1.cif

e-68-o1787-sup1.cif (24.6KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812021654/hb6778Isup2.hkl

e-68-o1787-Isup2.hkl (141.4KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812021654/hb6778Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C5—H5⋯F1i 0.93 2.53 3.442 (5) 167

Symmetry code: (i) Inline graphic.

Acknowledgments

MS gratefully acknowledges the Higher Education Commission, Islamabad, Pakistan, for providing a scholarship under the Indigenous PhD Program (PIN 042–120567-PS2–276).

supplementary crystallographic information

Comment

As part of our ongoing synthetic and structural studies of thiazine derivatives (Shafiq et al., 2012), we now describe the title compound, (I), (Fig. 1).

In (I), the benzene rings A (C1—C6) and B (C10—C15) are planar with r. m. s. deviation of 0.0040 and 0.0012 Å, respectively. The dihedral angle between A/B is 4.47 (3)°. The central group C (N2/N3/C9) is of course planar. The dihedral angle between A/C and B/C is 5.87 (7) and 1.48 (8)°, respectively. The thiazine ring D (C1/C6/N1/S1/C7/C8) is in the half-chair form, with the maximum puckering amplitude (Cremer & Pople, 1975), Q = 0.563 (3) Å. In the crystal, the molecules form chains due to H-bonding of C—H···F type (Table 1, Fig. 2). There exist π–π interactions between CgA···CgBi [i = 1 - x, -y, 1 - z] and CgB···CgAii [ii = 2 - x, -y, 1 - z] at a distance of 3.758 (2) and 3.753 (2) Å, where CgA and CgB are the centroids of benzene rings A and B, respectively.

Experimental

The Schiff base derivative of (4Z)-4-hydrazinylidene-1-methyl-3,4-dihydro -1H-2,1-benzothiazine 2,2-dioxide and 3-flourobenzaldehyde was prepared using the method reported previously (Shafiq et al. 2011b). The chlorination of the schiff base was undertaken using N-chloro succinimide and dibenzoylperoxide (Shafiq et al., 2011a). The crude product of (I) was re-crystallized in ethyl acetate to obtain yellow needles of the title compound.

Refinement

The H-atoms were positioned geometrically (C–H = 0.93–0.96 Å) and refined as riding with Uiso(H) = xUeq(C), where x = 1.5 for methyl and x = 1.2 for aryl H-atoms.

Figures

Fig. 1.

Fig. 1.

View of the title compound with displacement ellipsoids drawn at the 50% probability level.

Fig. 2.

Fig. 2.

Partial packing diagram showing polymeric chains.

Crystal data

C16H13ClFN3O2S Z = 2
Mr = 365.80 F(000) = 376
Triclinic, P1 Dx = 1.485 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 7.0072 (3) Å Cell parameters from 1744 reflections
b = 8.9402 (4) Å θ = 2.3–25.3°
c = 13.3438 (6) Å µ = 0.39 mm1
α = 98.184 (3)° T = 296 K
β = 90.510 (2)° Needle, yellow
γ = 98.389 (3)° 0.26 × 0.18 × 0.12 mm
V = 818.19 (6) Å3

Data collection

Bruker Kappa APEXII CCD diffractometer 2941 independent reflections
Radiation source: fine-focus sealed tube 1744 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.065
Detector resolution: 8.10 pixels mm-1 θmax = 25.3°, θmin = 2.3°
ω scans h = −8→8
Absorption correction: multi-scan (SADABS; Bruker, 2005) k = −10→10
Tmin = 0.930, Tmax = 0.960 l = −16→16
11874 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.120 H-atom parameters constrained
S = 1.00 w = 1/[σ2(Fo2) + (0.0478P)2 + 0.0889P] where P = (Fo2 + 2Fc2)/3
2941 reflections (Δ/σ)max < 0.001
218 parameters Δρmax = 0.33 e Å3
0 restraints Δρmin = −0.32 e Å3

Special details

Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cl1 0.49246 (13) 0.08066 (10) 0.23725 (7) 0.0532 (4)
S1 0.86510 (13) 0.02559 (10) 0.15593 (7) 0.0428 (3)
F1 0.8027 (4) 0.4684 (3) 0.88468 (18) 0.0894 (11)
O1 1.0538 (3) 0.0163 (3) 0.19335 (18) 0.0532 (9)
O2 0.8416 (4) 0.1283 (3) 0.08580 (18) 0.0561 (10)
N1 0.7533 (4) −0.1425 (3) 0.1110 (2) 0.0426 (10)
N2 0.7629 (4) −0.0292 (3) 0.4293 (2) 0.0459 (11)
N3 0.7744 (4) 0.1263 (3) 0.4676 (2) 0.0483 (11)
C1 0.7272 (4) −0.2167 (3) 0.2815 (3) 0.0336 (11)
C2 0.7020 (5) −0.3359 (4) 0.3404 (3) 0.0450 (12)
C3 0.6839 (5) −0.4857 (4) 0.2968 (3) 0.0516 (16)
C4 0.6917 (5) −0.5215 (4) 0.1934 (3) 0.0523 (16)
C5 0.7157 (5) −0.4082 (4) 0.1340 (3) 0.0478 (12)
C6 0.7322 (4) −0.2558 (4) 0.1761 (3) 0.0365 (12)
C7 0.7362 (4) 0.0683 (4) 0.2675 (2) 0.0369 (12)
C8 0.7431 (4) −0.0574 (3) 0.3326 (3) 0.0349 (11)
C9 0.7800 (5) 0.1472 (4) 0.5641 (3) 0.0460 (14)
C10 0.7926 (5) 0.2996 (4) 0.6232 (3) 0.0403 (12)
C11 0.7939 (5) 0.3134 (4) 0.7280 (3) 0.0446 (12)
C12 0.8044 (5) 0.4569 (5) 0.7816 (3) 0.0509 (14)
C13 0.8143 (5) 0.5861 (4) 0.7388 (3) 0.0555 (16)
C14 0.8139 (6) 0.5733 (5) 0.6347 (3) 0.0616 (17)
C15 0.8029 (5) 0.4312 (4) 0.5773 (3) 0.0520 (16)
C16 0.6640 (7) −0.1733 (4) 0.0094 (3) 0.0738 (19)
H2 0.69751 −0.31273 0.41045 0.0537*
H3 0.66630 −0.56307 0.33701 0.0617*
H4 0.68056 −0.62314 0.16378 0.0630*
H5 0.72107 −0.43369 0.06412 0.0575*
H7 0.79712 0.16603 0.30513 0.0445*
H9 0.77593 0.06299 0.59809 0.0550*
H11 0.78773 0.22787 0.76088 0.0531*
H13 0.82112 0.68101 0.77869 0.0670*
H14 0.82110 0.66031 0.60328 0.0737*
H15 0.80241 0.42290 0.50700 0.0627*
H16A 0.73119 −0.24304 −0.03305 0.1104*
H16B 0.67065 −0.07948 −0.01841 0.1104*
H16C 0.53138 −0.21768 0.01300 0.1104*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cl1 0.0468 (6) 0.0544 (6) 0.0638 (7) 0.0169 (5) 0.0014 (5) 0.0171 (5)
S1 0.0479 (6) 0.0375 (6) 0.0431 (6) 0.0047 (4) 0.0054 (4) 0.0072 (4)
F1 0.118 (2) 0.096 (2) 0.0487 (17) 0.0188 (16) 0.0047 (15) −0.0117 (13)
O1 0.0366 (14) 0.0522 (16) 0.0688 (18) 0.0026 (12) 0.0021 (13) 0.0062 (14)
O2 0.0778 (19) 0.0452 (16) 0.0494 (17) 0.0094 (13) 0.0105 (14) 0.0197 (13)
N1 0.0589 (19) 0.0380 (18) 0.0290 (17) 0.0038 (14) −0.0007 (14) 0.0021 (14)
N2 0.062 (2) 0.0408 (19) 0.0339 (19) 0.0118 (15) −0.0019 (15) −0.0016 (14)
N3 0.070 (2) 0.0406 (19) 0.0321 (19) 0.0104 (16) −0.0009 (16) −0.0043 (14)
C1 0.0342 (19) 0.031 (2) 0.035 (2) 0.0057 (15) −0.0041 (16) 0.0025 (16)
C2 0.049 (2) 0.044 (2) 0.042 (2) 0.0071 (18) −0.0016 (18) 0.0060 (19)
C3 0.059 (3) 0.038 (2) 0.059 (3) 0.0051 (19) −0.007 (2) 0.014 (2)
C4 0.064 (3) 0.032 (2) 0.059 (3) 0.0044 (19) −0.007 (2) 0.004 (2)
C5 0.057 (2) 0.044 (2) 0.040 (2) 0.0084 (19) 0.0006 (19) −0.0031 (19)
C6 0.038 (2) 0.036 (2) 0.035 (2) 0.0062 (16) −0.0027 (16) 0.0032 (17)
C7 0.040 (2) 0.034 (2) 0.034 (2) 0.0038 (16) 0.0010 (16) −0.0024 (16)
C8 0.0325 (19) 0.035 (2) 0.036 (2) 0.0037 (15) −0.0034 (16) 0.0025 (16)
C9 0.048 (2) 0.047 (2) 0.043 (3) 0.0120 (18) 0.0026 (19) 0.0019 (19)
C10 0.041 (2) 0.046 (2) 0.032 (2) 0.0069 (17) 0.0038 (16) −0.0009 (18)
C11 0.049 (2) 0.047 (2) 0.036 (2) 0.0043 (18) 0.0045 (18) 0.0031 (18)
C12 0.054 (2) 0.066 (3) 0.027 (2) 0.006 (2) 0.0025 (18) −0.010 (2)
C13 0.055 (3) 0.042 (2) 0.065 (3) 0.007 (2) 0.006 (2) −0.008 (2)
C14 0.071 (3) 0.056 (3) 0.056 (3) 0.007 (2) 0.003 (2) 0.005 (2)
C15 0.062 (3) 0.053 (3) 0.039 (2) 0.006 (2) 0.0028 (19) 0.002 (2)
C16 0.123 (4) 0.056 (3) 0.039 (3) 0.002 (3) −0.016 (3) 0.008 (2)

Geometric parameters (Å, º)

Cl1—C7 1.774 (3) C10—C11 1.386 (6)
S1—O1 1.427 (2) C10—C15 1.395 (5)
S1—O2 1.426 (3) C11—C12 1.369 (6)
S1—N1 1.620 (3) C12—C13 1.353 (6)
S1—C7 1.772 (3) C13—C14 1.377 (6)
F1—C12 1.365 (5) C14—C15 1.378 (6)
N1—C6 1.418 (5) C2—H2 0.9300
N1—C16 1.461 (5) C3—H3 0.9300
N2—N3 1.402 (4) C4—H4 0.9300
N2—C8 1.281 (5) C5—H5 0.9300
N3—C9 1.274 (5) C7—H7 0.9800
C1—C2 1.404 (5) C9—H9 0.9300
C1—C6 1.402 (6) C11—H11 0.9300
C1—C8 1.477 (4) C13—H13 0.9300
C2—C3 1.370 (5) C14—H14 0.9300
C3—C4 1.375 (6) C15—H15 0.9300
C4—C5 1.365 (5) C16—H16A 0.9600
C5—C6 1.386 (5) C16—H16B 0.9600
C7—C8 1.521 (5) C16—H16C 0.9600
C9—C10 1.464 (5)
O1—S1—O2 119.60 (17) F1—C12—C13 118.7 (4)
O1—S1—N1 110.77 (16) C11—C12—C13 124.2 (4)
O1—S1—C7 103.50 (14) C12—C13—C14 118.3 (4)
O2—S1—N1 108.96 (15) C13—C14—C15 119.8 (4)
O2—S1—C7 111.18 (16) C10—C15—C14 120.9 (4)
N1—S1—C7 101.18 (15) C1—C2—H2 119.00
S1—N1—C6 117.9 (2) C3—C2—H2 119.00
S1—N1—C16 121.1 (2) C2—C3—H3 120.00
C6—N1—C16 120.9 (3) C4—C3—H3 120.00
N3—N2—C8 113.5 (3) C3—C4—H4 120.00
N2—N3—C9 111.1 (3) C5—C4—H4 120.00
C2—C1—C6 117.8 (3) C4—C5—H5 119.00
C2—C1—C8 118.9 (3) C6—C5—H5 119.00
C6—C1—C8 123.2 (3) Cl1—C7—H7 109.00
C1—C2—C3 121.3 (4) S1—C7—H7 109.00
C2—C3—C4 119.9 (3) C8—C7—H7 109.00
C3—C4—C5 120.2 (3) N3—C9—H9 119.00
C4—C5—C6 121.1 (4) C10—C9—H9 119.00
N1—C6—C1 121.4 (3) C10—C11—H11 121.00
N1—C6—C5 118.9 (3) C12—C11—H11 121.00
C1—C6—C5 119.7 (3) C12—C13—H13 121.00
Cl1—C7—S1 110.70 (15) C14—C13—H13 121.00
Cl1—C7—C8 109.6 (2) C13—C14—H14 120.00
S1—C7—C8 108.8 (2) C15—C14—H14 120.00
N2—C8—C1 119.6 (3) C10—C15—H15 120.00
N2—C8—C7 122.2 (3) C14—C15—H15 120.00
C1—C8—C7 118.2 (3) N1—C16—H16A 109.00
N3—C9—C10 122.1 (3) N1—C16—H16B 109.00
C9—C10—C11 118.9 (3) N1—C16—H16C 109.00
C9—C10—C15 122.0 (4) H16A—C16—H16B 110.00
C11—C10—C15 119.0 (3) H16A—C16—H16C 109.00
C10—C11—C12 117.9 (3) H16B—C16—H16C 109.00
F1—C12—C11 117.2 (4)
O1—S1—N1—C6 56.5 (3) C2—C1—C8—C7 −169.8 (3)
O2—S1—N1—C6 −170.0 (2) C8—C1—C2—C3 179.1 (3)
C7—S1—N1—C6 −52.8 (3) C6—C1—C2—C3 0.4 (5)
O1—S1—N1—C16 −128.2 (3) C6—C1—C8—N2 −170.9 (3)
O2—S1—N1—C16 5.4 (3) C1—C2—C3—C4 0.5 (5)
C7—S1—N1—C16 122.6 (3) C2—C3—C4—C5 −0.6 (5)
N1—S1—C7—Cl1 −63.9 (2) C3—C4—C5—C6 −0.1 (5)
O1—S1—C7—C8 −58.3 (2) C4—C5—C6—N1 −178.8 (3)
O2—S1—C7—C8 172.1 (2) C4—C5—C6—C1 1.0 (5)
N1—S1—C7—C8 56.5 (2) Cl1—C7—C8—N2 −97.9 (3)
O1—S1—C7—Cl1 −178.68 (18) Cl1—C7—C8—C1 82.4 (3)
O2—S1—C7—Cl1 51.7 (2) S1—C7—C8—N2 141.0 (3)
C16—N1—C6—C5 31.8 (5) S1—C7—C8—C1 −38.7 (3)
S1—N1—C6—C5 −152.9 (3) N3—C9—C10—C11 178.6 (3)
S1—N1—C6—C1 27.3 (4) N3—C9—C10—C15 −1.2 (5)
C16—N1—C6—C1 −148.0 (3) C9—C10—C11—C12 −179.6 (3)
C8—N2—N3—C9 175.3 (3) C15—C10—C11—C12 0.3 (5)
N3—N2—C8—C1 −179.5 (3) C9—C10—C15—C14 179.7 (4)
N3—N2—C8—C7 0.9 (4) C11—C10—C15—C14 −0.1 (5)
N2—N3—C9—C10 179.9 (3) C10—C11—C12—F1 179.1 (3)
C2—C1—C6—N1 178.7 (3) C10—C11—C12—C13 −0.3 (6)
C2—C1—C6—C5 −1.1 (4) F1—C12—C13—C14 −179.3 (3)
C8—C1—C6—N1 0.0 (4) C11—C12—C13—C14 0.0 (6)
C8—C1—C6—C5 −179.8 (3) C12—C13—C14—C15 0.2 (6)
C6—C1—C8—C7 8.9 (4) C13—C14—C15—C10 −0.2 (6)
C2—C1—C8—N2 10.5 (4)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
C5—H5···F1i 0.93 2.53 3.442 (5) 167

Symmetry code: (i) x, y−1, z−1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HB6778).

References

  1. Bruker (2005). SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Bruker (2009). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Cremer, D. & Pople, J. A. (1975). J. Am. Chem. Soc. 97, 1354–1358.
  4. Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.
  5. Farrugia, L. J. (1999). J. Appl. Cryst. 32, 837–838.
  6. Shafiq, M., Khan, I. U., Arshad, M. N. & Siddiqui, W. A. (2011a). Asian J. Chem. 23, 2101–2106.
  7. Shafiq, M., Tahir, M. N., Khan, I. U. & Zia-Ur-Rehman, M. (2012). Acta Cryst. E68, o338. [DOI] [PMC free article] [PubMed]
  8. Shafiq, M., Zia-ur-rehman, M., Khan, I. U., Arshad, M. N. & Khan, S. A. (2011b). J. Chil. Chem. Soc. 56, 527–531.
  9. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  10. Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812021654/hb6778sup1.cif

e-68-o1787-sup1.cif (24.6KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812021654/hb6778Isup2.hkl

e-68-o1787-Isup2.hkl (141.4KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812021654/hb6778Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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