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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 May 19;68(Pt 6):o1795. doi: 10.1107/S1600536812021575

2-Benzyl-3-hy­droxy-3-methyl-2,3-dihydro-1H-isoindol-1-one

Hong-Yao Wang a,*, Jing-Kui Yang a
PMCID: PMC3379372  PMID: 22719570

Abstract

In the title compound, C16H15NO2, the isoindoline ring system is approximately planar (mean deviation = 0.0186 Å) and makes a dihedral angle of 61.91 (4)° with the phenyl ring. In the crystal, mol­ecules form inversion dimers via pairs of O—H⋯O hydrogen bonds.

Related literature  

For background to the synthesis of the title compound, see: Griffiths et al. (1983); For its applications in synthesis, see: Winn & Zaugg (1968); Katsuhiko et al. (2006). For related structures, see: Wang et al. (2008); Orzeszko et al. (1998); Liu et al. (2009); Rosamilia et al. (2002).graphic file with name e-68-o1795-scheme1.jpg

Experimental  

Crystal data  

  • C16H15NO2

  • M r = 253.29

  • Monoclinic, Inline graphic

  • a = 11.093 (4) Å

  • b = 11.604 (4) Å

  • c = 21.226 (7) Å

  • β = 101.777 (5)°

  • V = 2674.7 (15) Å3

  • Z = 8

  • Mo Kα radiation

  • μ = 0.08 mm−1

  • T = 153 K

  • 0.47 × 0.34 × 0.23 mm

Data collection  

  • Rigaku AFC10/Saturn724+ diffractometer

  • 11602 measured reflections

  • 3479 independent reflections

  • 2673 reflections with I > 2σ(I)

  • R int = 0.032

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.042

  • wR(F 2) = 0.114

  • S = 1.11

  • 3479 reflections

  • 177 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.21 e Å−3

  • Δρmin = −0.18 e Å−3

Data collection: CrystalClear (Rigaku, 2008); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812021575/nr2026sup1.cif

e-68-o1795-sup1.cif (22.2KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812021575/nr2026Isup2.hkl

e-68-o1795-Isup2.hkl (170.7KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812021575/nr2026Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O1—H1O⋯O2i 0.960 (15) 1.836 (15) 2.7938 (14) 175.3 (12)

Symmetry code: (i) Inline graphic.

Acknowledgments

We thank the National Natural Science Foundation of China and the Laboratory of Mol­ecular Nanostructure and Nanotechnology, Institute of Chemistry, Chinese Academy of Sciences, for financial support.

supplementary crystallographic information

Comment

The title compound was obtained as a byproduct in the preparation of 2-benzyl-1,1,3,3-tetramethylisoindoline, an important intermediate in the synthesis of the radical 1,1,3,3-Tetramethylisoindolin-2-yloxyl (TMIO), which is used as spin probe and radical scavenger (Griffiths et al., 1983). The title compound can be applied in the synthesis of heterocyclic amines through intramolecular amidoalkylation (Winn & Zaugg, 1968) and anionic ring-enlarging reaction (Katsuhiko et al., 2006).

The molecular structure of the title compound is shown in Fig. 1 and there are some similiar stuctures reported before (Wang et al., 2008; Orzeszko et al., 1998; Liu et al., 2009; Rosamilia et al., 2002). In the molecule, the isoindol ring system is approximately planar [mean deviation = 0.0186 Å] and has a dihedral angle of 61.91 (4)° with the benzene ring. In the crystal (Fig. 2), molecules form centrosymmetric dimers via pairs of O—H···O hydrogen bonds (Table 1).

Experimental

1.4 ml me thyl magnesium bromide solution (3 M in ether) was added to a 25 ml round-bottom flask filled with nitrogen and heated to 60 °C. A solution of N-benzylphthalimides (500 mg, 2.11 mmol) in toluene (15 ml) was added dropwise with stirring at a sufficient rate to maintain this temperature. When the addition was complete, the solution was heated to 110 °C and maintained at this temperature for 4 h. The reaction mixture was cooled to room temperature and petroleum was added. The mixture turned purple after stirring in air for 12 h. At the end, the mixture was filtered on celite and the filtrate obtained was dried, giving a precipitate which was separated by column chromatography on silica gel (eluent: ethyl acetate/petroleum ether, 1:3). The title compound was obtained as a colorless solid (123 mg, 23%) and evaporation of a solution in ethanol for 24 h afforded colorless single crystals suitable for X-ray diffraction.

Refinement

The hydroxy H atom was obtained by difference Fourier synthesis and refined freely. All other H atoms were placed at calculated positions, with C—H = 0.95–0.98 Å. The Uiso(H) values were constrained to be 1.5Ueq(C) for the methyl H atoms or 1.2Ueq(C) for the aromatic H atoms.

Figures

Fig. 1.

Fig. 1.

The molecular conformation of the title compound showing 50% probability displacement ellipsoids.

Fig. 2.

Fig. 2.

Molecular packing of the title compound.

Crystal data

C16H15NO2 F(000) = 1072
Mr = 253.29 Dx = 1.258 Mg m3
Monoclinic, C2/c Mo Kα radiation, λ = 0.71073 Å
a = 11.093 (4) Å Cell parameters from 4918 reflections
b = 11.604 (4) Å θ = 2.6–29.1°
c = 21.226 (7) Å µ = 0.08 mm1
β = 101.777 (5)° T = 153 K
V = 2674.7 (15) Å3 Block, colorless
Z = 8 0.47 × 0.34 × 0.23 mm

Data collection

Rigaku AFC10/Saturn724+ diffractometer 2673 reflections with I > 2σ(I)
Radiation source: Rotating Anode Rint = 0.032
Graphite monochromator θmax = 29.1°, θmin = 2.6°
Detector resolution: 28.5714 pixels mm-1 h = −12→15
phi and ω scans k = −15→15
11602 measured reflections l = −28→28
3479 independent reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.114 H atoms treated by a mixture of independent and constrained refinement
S = 1.11 w = 1/[σ2(Fo2) + (0.056P)2 + 0.0264P] where P = (Fo2 + 2Fc2)/3
3479 reflections (Δ/σ)max < 0.001
177 parameters Δρmax = 0.21 e Å3
0 restraints Δρmin = −0.18 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.48310 (7) 0.73617 (7) 0.04556 (4) 0.0310 (2)
O2 0.49294 (7) 0.35635 (7) 0.07278 (4) 0.0321 (2)
N1 0.46720 (9) 0.54981 (8) 0.09038 (4) 0.0256 (2)
C1 0.53806 (10) 0.65930 (9) 0.09452 (5) 0.0263 (2)
C2 0.66237 (10) 0.61485 (9) 0.08633 (5) 0.0242 (2)
C3 0.76900 (10) 0.67523 (10) 0.08427 (5) 0.0300 (3)
H3 0.7719 0.7568 0.0880 0.036*
C4 0.87197 (11) 0.61253 (10) 0.07655 (6) 0.0314 (3)
H4 0.9459 0.6525 0.0746 0.038*
C5 0.86960 (11) 0.49285 (10) 0.07166 (5) 0.0290 (3)
H5 0.9418 0.4523 0.0672 0.035*
C6 0.76204 (10) 0.43254 (9) 0.07334 (5) 0.0257 (3)
H6 0.7589 0.3509 0.0699 0.031*
C7 0.65951 (10) 0.49583 (9) 0.08021 (5) 0.0227 (2)
C8 0.53351 (11) 0.45578 (9) 0.08088 (5) 0.0247 (2)
C9 0.33419 (10) 0.54720 (10) 0.08518 (5) 0.0295 (3)
H9A 0.3006 0.4809 0.0578 0.035*
H9B 0.2989 0.6181 0.0628 0.035*
C10 0.29071 (10) 0.53813 (10) 0.14795 (5) 0.0283 (3)
C11 0.33512 (12) 0.45438 (11) 0.19347 (6) 0.0352 (3)
H11 0.4002 0.4052 0.1873 0.042*
C12 0.28499 (13) 0.44209 (12) 0.24794 (6) 0.0409 (3)
H12 0.3159 0.3844 0.2788 0.049*
C13 0.19061 (13) 0.51312 (13) 0.25754 (6) 0.0433 (3)
H13 0.1557 0.5037 0.2945 0.052*
C14 0.14733 (12) 0.59773 (14) 0.21325 (7) 0.0470 (4)
H14 0.0832 0.6475 0.2200 0.056*
C15 0.19722 (11) 0.61047 (12) 0.15877 (6) 0.0391 (3)
H15 0.1671 0.6693 0.1285 0.047*
C16 0.54084 (11) 0.71985 (10) 0.15828 (6) 0.0339 (3)
H16A 0.5928 0.7887 0.1609 0.041*
H16B 0.5745 0.6675 0.1938 0.041*
H16C 0.4570 0.7423 0.1613 0.041*
H1O 0.4958 (12) 0.7058 (13) 0.0054 (7) 0.059 (5)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0387 (5) 0.0236 (4) 0.0314 (4) 0.0059 (3) 0.0092 (4) 0.0017 (3)
O2 0.0404 (5) 0.0228 (4) 0.0347 (5) −0.0094 (3) 0.0114 (4) −0.0022 (3)
N1 0.0259 (5) 0.0244 (5) 0.0278 (5) −0.0027 (4) 0.0085 (4) −0.0011 (4)
C1 0.0305 (6) 0.0207 (5) 0.0280 (6) −0.0010 (4) 0.0069 (5) −0.0011 (4)
C2 0.0286 (6) 0.0202 (5) 0.0240 (5) −0.0011 (4) 0.0060 (4) −0.0005 (4)
C3 0.0333 (6) 0.0208 (5) 0.0357 (6) −0.0046 (5) 0.0063 (5) −0.0001 (5)
C4 0.0281 (6) 0.0308 (6) 0.0355 (6) −0.0052 (5) 0.0067 (5) 0.0040 (5)
C5 0.0290 (6) 0.0295 (6) 0.0290 (6) 0.0023 (5) 0.0073 (5) 0.0025 (5)
C6 0.0331 (7) 0.0202 (5) 0.0242 (5) 0.0007 (4) 0.0068 (5) 0.0009 (4)
C7 0.0287 (6) 0.0193 (5) 0.0202 (5) −0.0024 (4) 0.0054 (4) 0.0007 (4)
C8 0.0322 (6) 0.0225 (5) 0.0201 (5) −0.0037 (4) 0.0071 (4) 0.0001 (4)
C9 0.0266 (6) 0.0361 (6) 0.0260 (6) −0.0022 (5) 0.0059 (5) 0.0008 (5)
C10 0.0238 (6) 0.0353 (6) 0.0256 (6) −0.0062 (5) 0.0050 (4) −0.0023 (5)
C11 0.0401 (7) 0.0376 (7) 0.0284 (6) 0.0017 (5) 0.0080 (5) −0.0007 (5)
C12 0.0494 (9) 0.0469 (8) 0.0259 (6) −0.0046 (6) 0.0069 (6) 0.0030 (5)
C13 0.0405 (8) 0.0640 (9) 0.0279 (6) −0.0108 (7) 0.0132 (5) −0.0030 (6)
C14 0.0350 (7) 0.0681 (10) 0.0419 (8) 0.0064 (7) 0.0174 (6) 0.0024 (7)
C15 0.0292 (7) 0.0531 (8) 0.0367 (7) 0.0031 (6) 0.0107 (5) 0.0069 (6)
C16 0.0387 (7) 0.0311 (6) 0.0325 (6) 0.0011 (5) 0.0086 (5) −0.0084 (5)

Geometric parameters (Å, º)

O1—C1 1.4102 (13) C7—C8 1.4757 (16)
O1—H1O 0.960 (15) C9—C10 1.5103 (16)
O2—C8 1.2377 (13) C9—H9A 0.9900
N1—C8 1.3538 (14) C9—H9B 0.9900
N1—C9 1.4573 (16) C10—C11 1.3880 (17)
N1—C1 1.4871 (14) C10—C15 1.3894 (17)
C1—C2 1.5151 (16) C11—C12 1.3888 (18)
C1—C16 1.5196 (15) C11—H11 0.9500
C2—C3 1.3831 (15) C12—C13 1.380 (2)
C2—C7 1.3870 (15) C12—H12 0.9500
C3—C4 1.3918 (16) C13—C14 1.376 (2)
C3—H3 0.9500 C13—H13 0.9500
C4—C5 1.3925 (17) C14—C15 1.3879 (18)
C4—H4 0.9500 C14—H14 0.9500
C5—C6 1.3900 (16) C15—H15 0.9500
C5—H5 0.9500 C16—H16A 0.9800
C6—C7 1.3864 (15) C16—H16B 0.9800
C6—H6 0.9500 C16—H16C 0.9800
C1—O1—H1O 107.6 (9) N1—C9—C10 115.80 (10)
C8—N1—C9 122.99 (10) N1—C9—H9A 108.3
C8—N1—C1 113.62 (9) C10—C9—H9A 108.3
C9—N1—C1 122.48 (9) N1—C9—H9B 108.3
O1—C1—N1 110.67 (9) C10—C9—H9B 108.3
O1—C1—C2 113.42 (9) H9A—C9—H9B 107.4
N1—C1—C2 100.65 (8) C11—C10—C15 118.60 (11)
O1—C1—C16 106.91 (9) C11—C10—C9 122.08 (11)
N1—C1—C16 111.22 (9) C15—C10—C9 119.16 (11)
C2—C1—C16 113.96 (9) C10—C11—C12 120.40 (12)
C3—C2—C7 120.32 (10) C10—C11—H11 119.8
C3—C2—C1 129.45 (10) C12—C11—H11 119.8
C7—C2—C1 110.23 (9) C13—C12—C11 120.42 (13)
C2—C3—C4 117.82 (10) C13—C12—H12 119.8
C2—C3—H3 121.1 C11—C12—H12 119.8
C4—C3—H3 121.1 C14—C13—C12 119.65 (13)
C3—C4—C5 121.78 (10) C14—C13—H13 120.2
C3—C4—H4 119.1 C12—C13—H13 120.2
C5—C4—H4 119.1 C13—C14—C15 120.15 (13)
C6—C5—C4 120.23 (11) C13—C14—H14 119.9
C6—C5—H5 119.9 C15—C14—H14 119.9
C4—C5—H5 119.9 C14—C15—C10 120.77 (13)
C7—C6—C5 117.57 (10) C14—C15—H15 119.6
C7—C6—H6 121.2 C10—C15—H15 119.6
C5—C6—H6 121.2 C1—C16—H16A 109.5
C6—C7—C2 122.26 (10) C1—C16—H16B 109.5
C6—C7—C8 129.28 (10) H16A—C16—H16B 109.5
C2—C7—C8 108.44 (9) C1—C16—H16C 109.5
O2—C8—N1 125.37 (11) H16A—C16—H16C 109.5
O2—C8—C7 127.62 (10) H16B—C16—H16C 109.5
N1—C8—C7 106.98 (9)
C8—N1—C1—O1 119.71 (10) C1—C2—C7—C8 2.63 (12)
C9—N1—C1—O1 −49.64 (13) C9—N1—C8—O2 −7.00 (17)
C8—N1—C1—C2 −0.51 (11) C1—N1—C8—O2 −176.29 (10)
C9—N1—C1—C2 −169.86 (9) C9—N1—C8—C7 171.34 (9)
C8—N1—C1—C16 −121.59 (10) C1—N1—C8—C7 2.05 (12)
C9—N1—C1—C16 69.06 (12) C6—C7—C8—O2 −3.10 (19)
O1—C1—C2—C3 60.18 (15) C2—C7—C8—O2 175.41 (11)
N1—C1—C2—C3 178.40 (11) C6—C7—C8—N1 178.60 (10)
C16—C1—C2—C3 −62.48 (15) C2—C7—C8—N1 −2.89 (12)
O1—C1—C2—C7 −119.60 (10) C8—N1—C9—C10 99.09 (13)
N1—C1—C2—C7 −1.37 (11) C1—N1—C9—C10 −92.55 (12)
C16—C1—C2—C7 117.75 (11) N1—C9—C10—C11 −51.07 (15)
C7—C2—C3—C4 −0.60 (16) N1—C9—C10—C15 133.51 (12)
C1—C2—C3—C4 179.64 (10) C15—C10—C11—C12 1.30 (18)
C2—C3—C4—C5 −0.64 (17) C9—C10—C11—C12 −174.15 (11)
C3—C4—C5—C6 1.07 (17) C10—C11—C12—C13 −0.1 (2)
C4—C5—C6—C7 −0.23 (16) C11—C12—C13—C14 −1.0 (2)
C5—C6—C7—C2 −1.03 (16) C12—C13—C14—C15 0.9 (2)
C5—C6—C7—C8 177.31 (10) C13—C14—C15—C10 0.3 (2)
C3—C2—C7—C6 1.47 (16) C11—C10—C15—C14 −1.39 (19)
C1—C2—C7—C6 −178.73 (9) C9—C10—C15—C14 174.19 (12)
C3—C2—C7—C8 −177.17 (9)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
O1—H1O···O2i 0.960 (15) 1.836 (15) 2.7938 (14) 175.3 (12)

Symmetry code: (i) −x+1, −y+1, −z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: NR2026).

References

  1. Griffiths, P. G., Moad, G. & Rizzardo, E. (1983). Aust. J. Chem. 36, 397–401.
  2. Katsuhiko, T., Takahiro, T., Takayuki, H. & Kazunobu, I. (2006). Synlett, 15, 2449–2453.
  3. Liu, S., Zhang, X.-L., Zhang, W.-H. & Zhu, H.-J. (2009). Acta Cryst. E65, o3011. [DOI] [PMC free article] [PubMed]
  4. Orzeszko, A., Maurin, J. K., Niedzwiecka-Kornas, A. & Kazimierczuk, Z. (1998). Tetrahedron, 54, 7517–7524.
  5. Rigaku (2008). CrystalClear Rigaku Corporation, Tokyo, Japan.
  6. Rosamilia, A. E., Mayes, P. A., Papadopoulos, R., Campi, E. M., Jackson, W. R., Rash, L. & Jarrott, B. (2002). Aust. J. Chem. 55, 577–585.
  7. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  8. Wang, J. Y., Johnson, D. M. & Tiekink, E. R. T. (2008). Z. Kristallogr. New Cryst. Struct. 223, 25–26.
  9. Winn, M. & Zaugg, H. E. (1968). J. Org. Chem. 33, 3779–3783.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812021575/nr2026sup1.cif

e-68-o1795-sup1.cif (22.2KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812021575/nr2026Isup2.hkl

e-68-o1795-Isup2.hkl (170.7KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812021575/nr2026Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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