Abstract
In the title compound, C17H23NO4S, the pentadiene group adopts a planar conformation, with an r.m.s. deviation of 0.0410 (14) Å. The phenyl ring makes a dihedral angle of 85.73 (11)° with the pentadiene group, while the pentadiene group makes dihedral angles of 11.38 (11) and 14.08 (10)°, respectively, with the amino and ester groups. In the crystal, molecules are linked via pairs of C—H⋯O interactions, forming inversion dimers.
Related literature
For background information on pentadienoates, see: Sorbetti et al. (2007 ▶). For structural data of pentadienoates, see: Ceard et al. (2002 ▶). For details of weak hydrogen-bonding interactions, see: Steiner (2002 ▶).
Experimental
Crystal data
C17H23NO4S
M r = 337.42
Monoclinic,
a = 14.489 (2) Å
b = 8.2989 (12) Å
c = 16.706 (3) Å
β = 114.313 (3)°
V = 1830.6 (5) Å3
Z = 4
Mo Kα radiation
μ = 0.20 mm−1
T = 296 K
0.28 × 0.24 × 0.20 mm
Data collection
Bruker APEXII CCD area-detector diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 2003 ▶) T min = 0.669, T max = 0.746
11618 measured reflections
4183 independent reflections
2977 reflections with I > 2σ(I)
R int = 0.031
Refinement
R[F 2 > 2σ(F 2)] = 0.059
wR(F 2) = 0.168
S = 1.04
4183 reflections
211 parameters
H-atom parameters constrained
Δρmax = 0.47 e Å−3
Δρmin = −0.44 e Å−3
Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: APEX2 and SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL and DIAMOND (Brandenburg, 2005 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812023483/pk2405sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812023483/pk2405Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812023483/pk2405Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
---|---|---|---|---|
C13—H13A⋯O1i | 0.93 | 2.41 | 3.277 (3) | 155 |
Symmetry code: (i) .
supplementary crystallographic information
Comment
Analogues of pentadienoate have been used widely in perfumes, lubricants, as pharmaceutical intermediates and in other chemical industries (Ceard et al., 2002; Sorbetti et al., 2007). In this work, we report the crystal structure of the title compound, C17H23NO4S, (I). In the crystal (Fig. 1), the pentadiene group adopts a planar conformation with an r.m.s. deviation of 0.0410 (14) Å. The phenyl ring makes a dihedral angle of 85.73 (11)° with the pentadiene group. The dihedral angle of pentadiene with the amino group (atoms N1, C14, C16) is 11.38 (11)° and the dihedral angle between pentadiene and the ester group (atoms C8, O3, O4) is 14.08 (10)°. The crystal structure exhibits weak intermolecular C—H···O hydrogen bonds (Steiner, 2002; Table 1) between pairs of inversion related (-x, 1-y, 1-z) molecules to produce a weakly hydrogen-bonded dimer as shown in Fig. 2.
Experimental
The title compound was prepared by stirring a mixture of malonaldehyde bis(dimethyl acetal) (411 mg, 2.5 mmol), ethanamine (366 mg, 2.5 mmol) and acetic acid (300 mg, 5 mmol) under reflux for 1 h. After cooling, ethyl 2-(phenylsulfonyl)acetate (428 mg, 1.87 mmol), DMF (1.5 ml) and 1,8-diazabicyclo[5.4.0]undec-7-ene (DBU, 761 mg, 5 mmol) were added and stirred for 6 h. Then the reaction mixture was added dropwise to ice water (20 ml) to give a yellow solid (259 mg), which was dissolved in 2-propanol. Pale yellow rhomboid-shaped crystals of (I) formed upon evaporation after 7d.
Refinement
All the H atoms were positioned geometrically (C—H = 0.93–0.97 Å) and refined as riding, with Uiso(H) = 1.2Ueq(carrier) or 1.5Ueq(methyl C).
Figures
Fig. 1.
The molecular structure of (I) showing 30% probability displacement ellipsoids.
Fig. 2.
Crystal packing diagram of (I) with weak hydrogen bonds indicated as dashed lines.
Crystal data
C17H23NO4S | F(000) = 720 |
Mr = 337.42 | Dx = 1.224 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 3554 reflections |
a = 14.489 (2) Å | θ = 2.7–25.5° |
b = 8.2989 (12) Å | µ = 0.20 mm−1 |
c = 16.706 (3) Å | T = 296 K |
β = 114.313 (3)° | Block, pale yellow |
V = 1830.6 (5) Å3 | 0.28 × 0.24 × 0.20 mm |
Z = 4 |
Data collection
Bruker APEXII CCD area-detector diffractometer | 4183 independent reflections |
Radiation source: fine-focus sealed tube | 2977 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.031 |
φ and ω scans | θmax = 27.6°, θmin = 1.6° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | h = −18→18 |
Tmin = 0.669, Tmax = 0.746 | k = −10→10 |
11618 measured reflections | l = −21→19 |
Refinement
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.059 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.168 | H-atom parameters constrained |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0806P)2 + 0.7143P] where P = (Fo2 + 2Fc2)/3 |
4183 reflections | (Δ/σ)max < 0.001 |
211 parameters | Δρmax = 0.47 e Å−3 |
0 restraints | Δρmin = −0.44 e Å−3 |
Special details
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
x | y | z | Uiso*/Ueq | ||
S1 | 0.11499 (4) | 0.59041 (7) | 0.39164 (4) | 0.04777 (19) | |
O1 | 0.02067 (12) | 0.5770 (2) | 0.40107 (12) | 0.0639 (5) | |
O2 | 0.12167 (17) | 0.7075 (2) | 0.33125 (13) | 0.0767 (6) | |
O3 | 0.38118 (13) | 0.6802 (3) | 0.58018 (13) | 0.0790 (7) | |
O4 | 0.33628 (15) | 0.6001 (3) | 0.44145 (14) | 0.0809 (7) | |
N1 | 0.22370 (15) | 0.6412 (3) | 0.79523 (13) | 0.0586 (5) | |
C1 | 0.13732 (16) | 0.3988 (3) | 0.35660 (15) | 0.0445 (5) | |
C2 | 0.1630 (2) | 0.3849 (3) | 0.28691 (19) | 0.0635 (7) | |
H2A | 0.1709 | 0.4763 | 0.2581 | 0.076* | |
C3 | 0.1772 (2) | 0.2316 (4) | 0.2595 (2) | 0.0825 (10) | |
H3A | 0.1942 | 0.2202 | 0.2119 | 0.099* | |
C4 | 0.1661 (2) | 0.0986 (4) | 0.3026 (2) | 0.0787 (9) | |
H4A | 0.1764 | −0.0032 | 0.2844 | 0.094* | |
C5 | 0.1404 (3) | 0.1130 (3) | 0.3716 (2) | 0.0789 (9) | |
H5A | 0.1338 | 0.0213 | 0.4009 | 0.095* | |
C6 | 0.1240 (2) | 0.2627 (3) | 0.39856 (18) | 0.0623 (7) | |
H6A | 0.1041 | 0.2724 | 0.4446 | 0.075* | |
C7 | 0.21004 (16) | 0.6228 (3) | 0.49653 (15) | 0.0455 (5) | |
C8 | 0.31330 (19) | 0.6342 (3) | 0.50106 (17) | 0.0572 (6) | |
C9 | 0.4909 (2) | 0.6711 (6) | 0.5980 (3) | 0.1000 (12) | |
H9A | 0.5311 | 0.6566 | 0.6604 | 0.120* | |
H9B | 0.5027 | 0.5796 | 0.5673 | 0.120* | |
C10 | 0.5202 (4) | 0.8158 (8) | 0.5691 (4) | 0.153 (2) | |
H10A | 0.5916 | 0.8128 | 0.5836 | 0.229* | |
H10B | 0.5053 | 0.9064 | 0.5975 | 0.229* | |
H10C | 0.4836 | 0.8258 | 0.5066 | 0.229* | |
C11 | 0.18153 (17) | 0.6212 (3) | 0.56550 (15) | 0.0453 (5) | |
H11A | 0.1130 | 0.6014 | 0.5493 | 0.054* | |
C12 | 0.23716 (17) | 0.6439 (3) | 0.65536 (15) | 0.0480 (5) | |
H12A | 0.3055 | 0.6710 | 0.6780 | 0.058* | |
C13 | 0.18773 (18) | 0.6250 (3) | 0.70915 (16) | 0.0522 (6) | |
H13A | 0.1197 | 0.5969 | 0.6813 | 0.063* | |
C14 | 0.1598 (3) | 0.6048 (4) | 0.8424 (2) | 0.0772 (9) | |
H14A | 0.1037 | 0.5372 | 0.8056 | 0.093* | |
H14B | 0.1993 | 0.5447 | 0.8953 | 0.093* | |
C15 | 0.1196 (3) | 0.7509 (5) | 0.8664 (3) | 0.1104 (14) | |
H15A | 0.0789 | 0.7212 | 0.8971 | 0.166* | |
H15B | 0.0788 | 0.8094 | 0.8141 | 0.166* | |
H15C | 0.1748 | 0.8175 | 0.9035 | 0.166* | |
C16 | 0.32789 (19) | 0.6914 (3) | 0.84751 (16) | 0.0595 (6) | |
H16A | 0.3300 | 0.7548 | 0.8970 | 0.071* | |
H16B | 0.3504 | 0.7597 | 0.8119 | 0.071* | |
C17 | 0.3990 (3) | 0.5521 (4) | 0.8809 (3) | 0.0984 (11) | |
H17A | 0.4649 | 0.5909 | 0.9193 | 0.148* | |
H17B | 0.4034 | 0.4962 | 0.8323 | 0.148* | |
H17C | 0.3744 | 0.4799 | 0.9126 | 0.148* |
Atomic displacement parameters (Å2)
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0517 (3) | 0.0390 (3) | 0.0470 (3) | 0.0037 (2) | 0.0147 (2) | −0.0007 (2) |
O1 | 0.0429 (9) | 0.0721 (12) | 0.0661 (11) | 0.0088 (8) | 0.0118 (8) | −0.0138 (9) |
O2 | 0.1097 (16) | 0.0469 (10) | 0.0628 (12) | 0.0035 (10) | 0.0246 (11) | 0.0143 (9) |
O3 | 0.0504 (10) | 0.1203 (18) | 0.0705 (12) | −0.0272 (11) | 0.0292 (9) | −0.0313 (12) |
O4 | 0.0694 (12) | 0.1177 (18) | 0.0694 (12) | −0.0237 (11) | 0.0426 (10) | −0.0264 (12) |
N1 | 0.0557 (12) | 0.0719 (14) | 0.0515 (12) | −0.0186 (10) | 0.0256 (10) | −0.0151 (10) |
C1 | 0.0456 (11) | 0.0395 (11) | 0.0466 (12) | −0.0035 (9) | 0.0172 (9) | −0.0058 (9) |
C2 | 0.0724 (17) | 0.0638 (16) | 0.0657 (16) | −0.0099 (13) | 0.0399 (14) | −0.0077 (13) |
C3 | 0.088 (2) | 0.092 (2) | 0.090 (2) | −0.0117 (18) | 0.0583 (19) | −0.0339 (19) |
C4 | 0.0771 (19) | 0.0543 (16) | 0.112 (3) | −0.0126 (14) | 0.0456 (19) | −0.0323 (17) |
C5 | 0.095 (2) | 0.0443 (15) | 0.104 (2) | −0.0059 (14) | 0.047 (2) | −0.0028 (15) |
C6 | 0.0828 (19) | 0.0460 (13) | 0.0643 (16) | −0.0011 (12) | 0.0366 (14) | 0.0006 (12) |
C7 | 0.0447 (11) | 0.0422 (11) | 0.0499 (12) | −0.0043 (9) | 0.0197 (10) | −0.0079 (9) |
C8 | 0.0533 (13) | 0.0644 (15) | 0.0590 (15) | −0.0143 (12) | 0.0284 (12) | −0.0131 (12) |
C9 | 0.0607 (18) | 0.154 (4) | 0.091 (2) | −0.019 (2) | 0.0365 (18) | −0.023 (3) |
C10 | 0.114 (4) | 0.185 (6) | 0.178 (5) | −0.061 (4) | 0.079 (4) | −0.030 (4) |
C11 | 0.0413 (11) | 0.0406 (11) | 0.0544 (13) | −0.0010 (9) | 0.0203 (10) | −0.0077 (10) |
C12 | 0.0435 (11) | 0.0493 (12) | 0.0522 (13) | −0.0061 (10) | 0.0205 (10) | −0.0104 (10) |
C13 | 0.0470 (12) | 0.0545 (14) | 0.0549 (13) | −0.0104 (10) | 0.0208 (10) | −0.0143 (11) |
C14 | 0.082 (2) | 0.092 (2) | 0.0699 (18) | −0.0248 (17) | 0.0428 (16) | −0.0180 (16) |
C15 | 0.102 (3) | 0.121 (3) | 0.137 (3) | −0.019 (2) | 0.079 (3) | −0.033 (3) |
C16 | 0.0630 (15) | 0.0623 (16) | 0.0482 (13) | −0.0171 (12) | 0.0177 (11) | −0.0118 (12) |
C17 | 0.080 (2) | 0.078 (2) | 0.115 (3) | −0.0047 (18) | 0.018 (2) | 0.005 (2) |
Geometric parameters (Å, º)
S1—O2 | 1.4324 (19) | C9—C10 | 1.423 (7) |
S1—O1 | 1.4429 (18) | C9—H9A | 0.9700 |
S1—C7 | 1.747 (2) | C9—H9B | 0.9700 |
S1—C1 | 1.770 (2) | C10—H10A | 0.9600 |
O3—C8 | 1.338 (3) | C10—H10B | 0.9600 |
O3—C9 | 1.494 (4) | C10—H10C | 0.9600 |
O4—C8 | 1.206 (3) | C11—C12 | 1.394 (3) |
N1—C13 | 1.319 (3) | C11—H11A | 0.9300 |
N1—C16 | 1.459 (3) | C12—C13 | 1.369 (3) |
N1—C14 | 1.473 (3) | C12—H12A | 0.9300 |
C1—C2 | 1.365 (3) | C13—H13A | 0.9300 |
C1—C6 | 1.384 (3) | C14—C15 | 1.471 (5) |
C2—C3 | 1.396 (4) | C14—H14A | 0.9700 |
C2—H2A | 0.9300 | C14—H14B | 0.9700 |
C3—C4 | 1.363 (5) | C15—H15A | 0.9600 |
C3—H3A | 0.9300 | C15—H15B | 0.9600 |
C4—C5 | 1.355 (5) | C15—H15C | 0.9600 |
C4—H4A | 0.9300 | C16—C17 | 1.495 (4) |
C5—C6 | 1.375 (4) | C16—H16A | 0.9700 |
C5—H5A | 0.9300 | C16—H16B | 0.9700 |
C6—H6A | 0.9300 | C17—H17A | 0.9600 |
C7—C11 | 1.375 (3) | C17—H17B | 0.9600 |
C7—C8 | 1.470 (3) | C17—H17C | 0.9600 |
O2—S1—O1 | 118.10 (12) | C9—C10—H10A | 109.5 |
O2—S1—C7 | 110.37 (12) | C9—C10—H10B | 109.5 |
O1—S1—C7 | 107.05 (11) | H10A—C10—H10B | 109.5 |
O2—S1—C1 | 107.58 (11) | C9—C10—H10C | 109.5 |
O1—S1—C1 | 106.07 (11) | H10A—C10—H10C | 109.5 |
C7—S1—C1 | 107.10 (10) | H10B—C10—H10C | 109.5 |
C8—O3—C9 | 118.1 (2) | C7—C11—C12 | 131.4 (2) |
C13—N1—C16 | 121.9 (2) | C7—C11—H11A | 114.3 |
C13—N1—C14 | 120.6 (2) | C12—C11—H11A | 114.3 |
C16—N1—C14 | 117.5 (2) | C13—C12—C11 | 117.7 (2) |
C2—C1—C6 | 120.5 (2) | C13—C12—H12A | 121.2 |
C2—C1—S1 | 120.57 (19) | C11—C12—H12A | 121.2 |
C6—C1—S1 | 118.88 (18) | N1—C13—C12 | 128.7 (2) |
C1—C2—C3 | 119.0 (3) | N1—C13—H13A | 115.7 |
C1—C2—H2A | 120.5 | C12—C13—H13A | 115.7 |
C3—C2—H2A | 120.5 | C15—C14—N1 | 112.5 (3) |
C4—C3—C2 | 120.0 (3) | C15—C14—H14A | 109.1 |
C4—C3—H3A | 120.0 | N1—C14—H14A | 109.1 |
C2—C3—H3A | 120.0 | C15—C14—H14B | 109.1 |
C5—C4—C3 | 120.7 (3) | N1—C14—H14B | 109.1 |
C5—C4—H4A | 119.6 | H14A—C14—H14B | 107.8 |
C3—C4—H4A | 119.6 | C14—C15—H15A | 109.5 |
C4—C5—C6 | 120.2 (3) | C14—C15—H15B | 109.5 |
C4—C5—H5A | 119.9 | H15A—C15—H15B | 109.5 |
C6—C5—H5A | 119.9 | C14—C15—H15C | 109.5 |
C5—C6—C1 | 119.5 (3) | H15A—C15—H15C | 109.5 |
C5—C6—H6A | 120.3 | H15B—C15—H15C | 109.5 |
C1—C6—H6A | 120.3 | N1—C16—C17 | 112.8 (2) |
C11—C7—C8 | 127.5 (2) | N1—C16—H16A | 109.0 |
C11—C7—S1 | 117.03 (17) | C17—C16—H16A | 109.0 |
C8—C7—S1 | 115.27 (17) | N1—C16—H16B | 109.0 |
O4—C8—O3 | 122.8 (2) | C17—C16—H16B | 109.0 |
O4—C8—C7 | 124.3 (2) | H16A—C16—H16B | 107.8 |
O3—C8—C7 | 112.8 (2) | C16—C17—H17A | 109.5 |
C10—C9—O3 | 109.3 (4) | C16—C17—H17B | 109.5 |
C10—C9—H9A | 109.8 | H17A—C17—H17B | 109.5 |
O3—C9—H9A | 109.8 | C16—C17—H17C | 109.5 |
C10—C9—H9B | 109.8 | H17A—C17—H17C | 109.5 |
O3—C9—H9B | 109.8 | H17B—C17—H17C | 109.5 |
H9A—C9—H9B | 108.3 | ||
O2—S1—C1—C2 | 4.3 (2) | C1—S1—C7—C8 | 64.6 (2) |
O1—S1—C1—C2 | 131.5 (2) | C9—O3—C8—O4 | −7.0 (5) |
C7—S1—C1—C2 | −114.4 (2) | C9—O3—C8—C7 | 170.3 (3) |
O2—S1—C1—C6 | −172.9 (2) | C11—C7—C8—O4 | 163.0 (3) |
O1—S1—C1—C6 | −45.7 (2) | S1—C7—C8—O4 | −11.1 (4) |
C7—S1—C1—C6 | 68.4 (2) | C11—C7—C8—O3 | −14.3 (4) |
C6—C1—C2—C3 | −1.0 (4) | S1—C7—C8—O3 | 171.59 (19) |
S1—C1—C2—C3 | −178.2 (2) | C8—O3—C9—C10 | 86.6 (4) |
C1—C2—C3—C4 | −0.5 (5) | C8—C7—C11—C12 | 6.7 (4) |
C2—C3—C4—C5 | 0.7 (5) | S1—C7—C11—C12 | −179.3 (2) |
C3—C4—C5—C6 | 0.7 (5) | C7—C11—C12—C13 | −176.0 (2) |
C4—C5—C6—C1 | −2.2 (5) | C16—N1—C13—C12 | 2.6 (4) |
C2—C1—C6—C5 | 2.4 (4) | C14—N1—C13—C12 | −175.8 (3) |
S1—C1—C6—C5 | 179.6 (2) | C11—C12—C13—N1 | −179.4 (2) |
O2—S1—C7—C11 | 132.99 (19) | C13—N1—C14—C15 | −101.9 (3) |
O1—S1—C7—C11 | 3.2 (2) | C16—N1—C14—C15 | 79.6 (4) |
C1—S1—C7—C11 | −110.18 (18) | C13—N1—C16—C17 | −91.9 (3) |
O2—S1—C7—C8 | −52.3 (2) | C14—N1—C16—C17 | 86.6 (3) |
O1—S1—C7—C8 | 177.97 (18) |
Hydrogen-bond geometry (Å, º)
D—H···A | D—H | H···A | D···A | D—H···A |
C13—H13A···O1i | 0.93 | 2.41 | 3.277 (3) | 155 |
Symmetry code: (i) −x, −y+1, −z+1.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: PK2405).
References
- Brandenburg, K. (2005). DIAMOND Crystal Impact GbR, Bonn, Germany.
- Bruker (2007). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
- Ceard, S., Roche, D., Gaumet, V., Gardette, D., Metin, J. & Madesclaire, M. (2002). J. Mol. Struct. 608, 27–33.
- Sheldrick, G. M. (2003). SADABS University of Göttingen, Germany.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Sorbetti, J. M., Clary, K. N., Rankic, D. A., Wulff, J. E., Parvez, M. & Back, T. G. (2007). J. Org. Chem. 72, 3326–3331. [DOI] [PubMed]
- Steiner, T. (2002). Angew. Chem. Int. Ed. 41, 48–76.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812023483/pk2405sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812023483/pk2405Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812023483/pk2405Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report