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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 May 31;68(Pt 6):o1925. doi: 10.1107/S1600536812023380

3-Meth­oxy-4-methyl-1H-1,2,4-triazol-5(4H)-one monohydrate

Wei Gao a,*, Xin-Ling Wang a, Jing Yang a, Xue-Fen Wu a
PMCID: PMC3379480  PMID: 22719678

Abstract

In the title hydrate, C4H7N3O2·H2O, all the non-H atoms lie on a crystallographic mirror plane. The H atoms of both methyl groups are disordered over two sets of sites. In the crystal, N—H⋯Ow and Ow—H⋯Ok (w = water and k = ketone) hydrogen bonds link the components into (010) sheets.

Related literature  

For related structures, see: Jin et al. (2011); Liu & Liu (2011); Liu et al. (2011, 2012); Ustabaş et al. (2010). For bioactivity data, see Tan et al. (2012).graphic file with name e-68-o1925-scheme1.jpg

Experimental  

Crystal data  

  • C4H7N3O2·H2O

  • M r = 147.14

  • Orthorhombic, Inline graphic

  • a = 6.810 (4) Å

  • b = 6.506 (4) Å

  • c = 15.277 (9) Å

  • V = 676.9 (7) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.12 mm−1

  • T = 113 K

  • 0.20 × 0.18 × 0.14 mm

Data collection  

  • Rigaku Saturn724 CCD diffractometer

  • Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005) T min = 0.976, T max = 0.983

  • 6611 measured reflections

  • 873 independent reflections

  • 727 reflections with I > 2σ(I)

  • R int = 0.048

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.032

  • wR(F 2) = 0.090

  • S = 1.01

  • 873 reflections

  • 72 parameters

  • 4 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.23 e Å−3

  • Δρmin = −0.26 e Å−3

Data collection: CrystalClear (Rigaku/MSC, 2005); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: CrystalStructure (Rigaku/MSC, 2005).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812023380/hb6806sup1.cif

e-68-o1925-sup1.cif (14KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812023380/hb6806Isup2.hkl

e-68-o1925-Isup2.hkl (43.5KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812023380/hb6806Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N2—H2⋯O3 0.90 (1) 1.85 (1) 2.7520 (15) 174 (1)
O3—H3A⋯O1i 0.87 (1) 1.89 (1) 2.7518 (18) 174 (1)
O3—H3B⋯O1ii 0.86 (1) 1.94 (1) 2.8024 (18) 179 (1)

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

We gratefully acknowledge the financial support from the Doctoral Research Fund of Henan University of Traditional Chinese Medicine.

supplementary crystallographic information

Comment

Sulfur and nitrogen heterocyclic compounds have received considerable attention in recent years because of their medicinal and pesticidal importance, such as 1,3,4-thiadiazoles, pyrimidines, 1,2,4-triazoles (Jin et al. 2011; Liu & Liu, 2011; Liu et al. 2011; Liu et al., 2012; Tan et al., 2011; Ustabaş et al., 2010).

Single-crystal X-ray diffraction analysis reveals that the title compound crystallizes in the orthorhombic space group Pnma. As shown in Fig. 2, the crystal structure features intermolecular hydrogen bonds O-H···O and N-H···O.

Experimental

The tite compound was available commercially. The crystals were grown from ethanol as colourless prisms

Refinement

All the H atoms were positioned geometrically (C—H = 0.93–0.97 Å) and refined as riding with Uiso(H) = 1.2Ueq(C) or 1.5Ueq(methyl C).

Figures

Fig. 1.

Fig. 1.

The molecular structure of (I). Displacement ellipsoids are drawn at the 30% probability level and H atoms are shown as small spheres of arbitrary radii.

Fig. 2.

Fig. 2.

The crystal packing for (I).

Crystal data

C4H7N3O2·H2O Dx = 1.444 Mg m3
Mr = 147.14 Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, Pnma Cell parameters from 2353 reflections
a = 6.810 (4) Å θ = 3.0–27.8°
b = 6.506 (4) Å µ = 0.12 mm1
c = 15.277 (9) Å T = 113 K
V = 676.9 (7) Å3 Prism, colorless
Z = 4 0.20 × 0.18 × 0.14 mm
F(000) = 312

Data collection

Rigaku Saturn724 CCD diffractometer 873 independent reflections
Radiation source: rotating anode 727 reflections with I > 2σ(I)
Multilayer monochromator Rint = 0.048
Detector resolution: 14.22 pixels mm-1 θmax = 27.9°, θmin = 3.3°
ω and φ scans h = −8→8
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005) k = −8→7
Tmin = 0.976, Tmax = 0.983 l = −20→20
6611 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.090 H atoms treated by a mixture of independent and constrained refinement
S = 1.01 w = 1/[σ2(Fo2) + (0.0616P)2] where P = (Fo2 + 2Fc2)/3
873 reflections (Δ/σ)max = 0.003
72 parameters Δρmax = 0.23 e Å3
4 restraints Δρmin = −0.26 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq Occ. (<1)
O1 0.64561 (9) 0.2500 0.35699 (4) 0.02165 (15)
O2 0.49415 (9) 0.2500 0.65038 (4) 0.02269 (16)
N1 0.62148 (10) 0.2500 0.50977 (4) 0.01766 (17)
N2 0.35229 (11) 0.2500 0.43609 (4) 0.01895 (17)
N3 0.29539 (11) 0.2500 0.52418 (5) 0.01921 (18)
C1 0.54905 (11) 0.2500 0.42578 (6) 0.0172 (2)
C2 0.46308 (12) 0.2500 0.56483 (6) 0.0169 (2)
C4 0.82847 (13) 0.2500 0.53342 (6) 0.0235 (2)
H4A 0.9060 0.1949 0.4847 0.035* 0.50
H4B 0.8481 0.1642 0.5854 0.035* 0.50
H4C 0.8707 0.3909 0.5461 0.035* 0.50
C3 0.31615 (14) 0.2500 0.70293 (6) 0.0257 (2)
H3D 0.2528 0.1151 0.6990 0.039* 0.50
H3E 0.2262 0.3558 0.6811 0.039* 0.50
H3C 0.3495 0.2791 0.7641 0.039* 0.50
O3 0.04758 (10) 0.2500 0.31776 (5) 0.0449 (2)
H2 0.2590 (12) 0.2500 0.3942 (6) 0.034 (3)*
H3A 0.0698 (13) 0.2500 0.2619 (4) 0.047 (4)*
H3B −0.0752 (9) 0.2500 0.3306 (6) 0.063 (4)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0167 (3) 0.0331 (3) 0.0152 (3) 0.000 0.0026 (2) 0.000
O2 0.0164 (3) 0.0380 (4) 0.0136 (3) 0.000 0.0014 (2) 0.000
N1 0.0116 (3) 0.0256 (4) 0.0158 (3) 0.000 0.0001 (3) 0.000
N2 0.0134 (3) 0.0301 (4) 0.0133 (3) 0.000 −0.0005 (3) 0.000
N3 0.0152 (3) 0.0273 (4) 0.0151 (3) 0.000 0.0014 (3) 0.000
C1 0.0154 (4) 0.0183 (4) 0.0179 (4) 0.000 −0.0004 (3) 0.000
C2 0.0149 (4) 0.0211 (4) 0.0147 (4) 0.000 0.0011 (3) 0.000
C4 0.0116 (4) 0.0377 (5) 0.0213 (4) 0.000 −0.0012 (3) 0.000
C3 0.0212 (4) 0.0394 (5) 0.0166 (4) 0.000 0.0074 (3) 0.000
O3 0.0155 (3) 0.1026 (7) 0.0165 (3) 0.000 −0.0008 (3) 0.000

Geometric parameters (Å, º)

O1—C1 1.2397 (12) N3—C2 1.2999 (12)
O2—C2 1.3239 (13) C4—H4A 0.9800
O2—C3 1.4540 (13) C4—H4B 0.9800
N1—C2 1.3679 (12) C4—H4C 0.9800
N1—C1 1.3746 (13) C3—H3D 0.9800
N1—C4 1.4552 (14) C3—H3E 0.9800
N2—C1 1.3492 (13) C3—H3C 0.9800
N2—N3 1.4003 (12) O3—H3A 0.867 (6)
N2—H2 0.901 (7) O3—H3B 0.859 (6)
C2—O2—C3 114.32 (7) N1—C4—H4A 109.5
C2—N1—C1 106.92 (8) N1—C4—H4B 109.5
C2—N1—C4 127.68 (8) H4A—C4—H4B 109.5
C1—N1—C4 125.41 (7) N1—C4—H4C 109.5
C1—N2—N3 112.77 (7) H4A—C4—H4C 109.5
C1—N2—H2 128.1 (6) H4B—C4—H4C 109.5
N3—N2—H2 119.1 (6) O2—C3—H3D 109.5
C2—N3—N2 102.47 (7) O2—C3—H3E 109.5
O1—C1—N2 128.74 (8) H3D—C3—H3E 109.5
O1—C1—N1 126.94 (8) O2—C3—H3C 109.5
N2—C1—N1 104.32 (7) H3D—C3—H3C 109.5
N3—C2—O2 127.74 (8) H3E—C3—H3C 109.5
N3—C2—N1 113.52 (9) H3A—O3—H3B 113.2 (8)
O2—C2—N1 118.75 (8)
C1—N2—N3—C2 0.0 N2—N3—C2—N1 0.0
N3—N2—C1—O1 180.0 C3—O2—C2—N3 0.0
N3—N2—C1—N1 0.0 C3—O2—C2—N1 180.0
C2—N1—C1—O1 180.0 C1—N1—C2—N3 0.0
C4—N1—C1—O1 0.0 C4—N1—C2—N3 180.0
C2—N1—C1—N2 0.0 C1—N1—C2—O2 180.0
C4—N1—C1—N2 180.0 C4—N1—C2—O2 0.0
N2—N3—C2—O2 180.0

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
N2—H2···O3 0.90 (1) 1.85 (1) 2.7520 (15) 174 (1)
O3—H3A···O1i 0.87 (1) 1.89 (1) 2.7518 (18) 174 (1)
O3—H3B···O1ii 0.86 (1) 1.94 (1) 2.8024 (18) 179 (1)

Symmetry codes: (i) x−1/2, y, −z+1/2; (ii) x−1, y, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HB6806).

References

  1. Jin, D.-C., Zhang, W.-B., Piao, F.-Y. & Han, R.-B. (2011). Acta Cryst. E67, o1821. [DOI] [PMC free article] [PubMed]
  2. Liu, X.-F. & Liu, X.-H. (2011). Acta Cryst. E67, o202.
  3. Liu, X. H., Pan, L., Weng, J. Q., Tan, C. X., Li, Y. H., Wang, B. L. & Li, Z. M. (2012). Mol. Divers. doi:10,1007/s11030-011-9352-z.
  4. Liu, X. H., Tan, C. X. & Weng, J. Q. (2011). Phosphorus Sulfur Silicon Relat. Elem. 186, 558–564.
  5. Rigaku/MSC (2005). CrystalClear and CrystalStructure Rigaku/MSC Inc., The Woodlands, Texas, USA.
  6. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  7. Tan, C. X., Shi, Y. X., Weng, J. Q., Liu, X. H., Li, B. J. & Zhao, W. G. (2012). Lett. Drug. Des. Discov. 9, 431–435.
  8. Ustabaş, R., Çoruh, U., Ünlüer, D., Hökelek, T. & Ermiş, E. (2010). Acta Cryst. E66, o2615. [DOI] [PMC free article] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812023380/hb6806sup1.cif

e-68-o1925-sup1.cif (14KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812023380/hb6806Isup2.hkl

e-68-o1925-Isup2.hkl (43.5KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812023380/hb6806Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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