Abstract
In the title hydrate, C4H7N3O2·H2O, all the non-H atoms lie on a crystallographic mirror plane. The H atoms of both methyl groups are disordered over two sets of sites. In the crystal, N—H⋯Ow and Ow—H⋯Ok (w = water and k = ketone) hydrogen bonds link the components into (010) sheets.
Related literature
For related structures, see: Jin et al. (2011 ▶); Liu & Liu (2011 ▶); Liu et al. (2011 ▶, 2012 ▶); Ustabaş et al. (2010) ▶. For bioactivity data, see Tan et al. (2012 ▶).
Experimental
Crystal data
C4H7N3O2·H2O
M r = 147.14
Orthorhombic,
a = 6.810 (4) Å
b = 6.506 (4) Å
c = 15.277 (9) Å
V = 676.9 (7) Å3
Z = 4
Mo Kα radiation
μ = 0.12 mm−1
T = 113 K
0.20 × 0.18 × 0.14 mm
Data collection
Rigaku Saturn724 CCD diffractometer
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005 ▶) T min = 0.976, T max = 0.983
6611 measured reflections
873 independent reflections
727 reflections with I > 2σ(I)
R int = 0.048
Refinement
R[F 2 > 2σ(F 2)] = 0.032
wR(F 2) = 0.090
S = 1.01
873 reflections
72 parameters
4 restraints
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.23 e Å−3
Δρmin = −0.26 e Å−3
Data collection: CrystalClear (Rigaku/MSC, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: CrystalStructure (Rigaku/MSC, 2005 ▶).
Supplementary Material
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812023380/hb6806sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812023380/hb6806Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812023380/hb6806Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N2—H2⋯O3 | 0.90 (1) | 1.85 (1) | 2.7520 (15) | 174 (1) |
| O3—H3A⋯O1i | 0.87 (1) | 1.89 (1) | 2.7518 (18) | 174 (1) |
| O3—H3B⋯O1ii | 0.86 (1) | 1.94 (1) | 2.8024 (18) | 179 (1) |
Symmetry codes: (i)
; (ii)
.
Acknowledgments
We gratefully acknowledge the financial support from the Doctoral Research Fund of Henan University of Traditional Chinese Medicine.
supplementary crystallographic information
Comment
Sulfur and nitrogen heterocyclic compounds have received considerable attention in recent years because of their medicinal and pesticidal importance, such as 1,3,4-thiadiazoles, pyrimidines, 1,2,4-triazoles (Jin et al. 2011; Liu & Liu, 2011; Liu et al. 2011; Liu et al., 2012; Tan et al., 2011; Ustabaş et al., 2010).
Single-crystal X-ray diffraction analysis reveals that the title compound crystallizes in the orthorhombic space group Pnma. As shown in Fig. 2, the crystal structure features intermolecular hydrogen bonds O-H···O and N-H···O.
Experimental
The tite compound was available commercially. The crystals were grown from ethanol as colourless prisms
Refinement
All the H atoms were positioned geometrically (C—H = 0.93–0.97 Å) and refined as riding with Uiso(H) = 1.2Ueq(C) or 1.5Ueq(methyl C).
Figures
Fig. 1.
The molecular structure of (I). Displacement ellipsoids are drawn at the 30% probability level and H atoms are shown as small spheres of arbitrary radii.
Fig. 2.
The crystal packing for (I).
Crystal data
| C4H7N3O2·H2O | Dx = 1.444 Mg m−3 |
| Mr = 147.14 | Mo Kα radiation, λ = 0.71073 Å |
| Orthorhombic, Pnma | Cell parameters from 2353 reflections |
| a = 6.810 (4) Å | θ = 3.0–27.8° |
| b = 6.506 (4) Å | µ = 0.12 mm−1 |
| c = 15.277 (9) Å | T = 113 K |
| V = 676.9 (7) Å3 | Prism, colorless |
| Z = 4 | 0.20 × 0.18 × 0.14 mm |
| F(000) = 312 |
Data collection
| Rigaku Saturn724 CCD diffractometer | 873 independent reflections |
| Radiation source: rotating anode | 727 reflections with I > 2σ(I) |
| Multilayer monochromator | Rint = 0.048 |
| Detector resolution: 14.22 pixels mm-1 | θmax = 27.9°, θmin = 3.3° |
| ω and φ scans | h = −8→8 |
| Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005) | k = −8→7 |
| Tmin = 0.976, Tmax = 0.983 | l = −20→20 |
| 6611 measured reflections |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.032 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.090 | H atoms treated by a mixture of independent and constrained refinement |
| S = 1.01 | w = 1/[σ2(Fo2) + (0.0616P)2] where P = (Fo2 + 2Fc2)/3 |
| 873 reflections | (Δ/σ)max = 0.003 |
| 72 parameters | Δρmax = 0.23 e Å−3 |
| 4 restraints | Δρmin = −0.26 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | Occ. (<1) | |
| O1 | 0.64561 (9) | 0.2500 | 0.35699 (4) | 0.02165 (15) | |
| O2 | 0.49415 (9) | 0.2500 | 0.65038 (4) | 0.02269 (16) | |
| N1 | 0.62148 (10) | 0.2500 | 0.50977 (4) | 0.01766 (17) | |
| N2 | 0.35229 (11) | 0.2500 | 0.43609 (4) | 0.01895 (17) | |
| N3 | 0.29539 (11) | 0.2500 | 0.52418 (5) | 0.01921 (18) | |
| C1 | 0.54905 (11) | 0.2500 | 0.42578 (6) | 0.0172 (2) | |
| C2 | 0.46308 (12) | 0.2500 | 0.56483 (6) | 0.0169 (2) | |
| C4 | 0.82847 (13) | 0.2500 | 0.53342 (6) | 0.0235 (2) | |
| H4A | 0.9060 | 0.1949 | 0.4847 | 0.035* | 0.50 |
| H4B | 0.8481 | 0.1642 | 0.5854 | 0.035* | 0.50 |
| H4C | 0.8707 | 0.3909 | 0.5461 | 0.035* | 0.50 |
| C3 | 0.31615 (14) | 0.2500 | 0.70293 (6) | 0.0257 (2) | |
| H3D | 0.2528 | 0.1151 | 0.6990 | 0.039* | 0.50 |
| H3E | 0.2262 | 0.3558 | 0.6811 | 0.039* | 0.50 |
| H3C | 0.3495 | 0.2791 | 0.7641 | 0.039* | 0.50 |
| O3 | 0.04758 (10) | 0.2500 | 0.31776 (5) | 0.0449 (2) | |
| H2 | 0.2590 (12) | 0.2500 | 0.3942 (6) | 0.034 (3)* | |
| H3A | 0.0698 (13) | 0.2500 | 0.2619 (4) | 0.047 (4)* | |
| H3B | −0.0752 (9) | 0.2500 | 0.3306 (6) | 0.063 (4)* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O1 | 0.0167 (3) | 0.0331 (3) | 0.0152 (3) | 0.000 | 0.0026 (2) | 0.000 |
| O2 | 0.0164 (3) | 0.0380 (4) | 0.0136 (3) | 0.000 | 0.0014 (2) | 0.000 |
| N1 | 0.0116 (3) | 0.0256 (4) | 0.0158 (3) | 0.000 | 0.0001 (3) | 0.000 |
| N2 | 0.0134 (3) | 0.0301 (4) | 0.0133 (3) | 0.000 | −0.0005 (3) | 0.000 |
| N3 | 0.0152 (3) | 0.0273 (4) | 0.0151 (3) | 0.000 | 0.0014 (3) | 0.000 |
| C1 | 0.0154 (4) | 0.0183 (4) | 0.0179 (4) | 0.000 | −0.0004 (3) | 0.000 |
| C2 | 0.0149 (4) | 0.0211 (4) | 0.0147 (4) | 0.000 | 0.0011 (3) | 0.000 |
| C4 | 0.0116 (4) | 0.0377 (5) | 0.0213 (4) | 0.000 | −0.0012 (3) | 0.000 |
| C3 | 0.0212 (4) | 0.0394 (5) | 0.0166 (4) | 0.000 | 0.0074 (3) | 0.000 |
| O3 | 0.0155 (3) | 0.1026 (7) | 0.0165 (3) | 0.000 | −0.0008 (3) | 0.000 |
Geometric parameters (Å, º)
| O1—C1 | 1.2397 (12) | N3—C2 | 1.2999 (12) |
| O2—C2 | 1.3239 (13) | C4—H4A | 0.9800 |
| O2—C3 | 1.4540 (13) | C4—H4B | 0.9800 |
| N1—C2 | 1.3679 (12) | C4—H4C | 0.9800 |
| N1—C1 | 1.3746 (13) | C3—H3D | 0.9800 |
| N1—C4 | 1.4552 (14) | C3—H3E | 0.9800 |
| N2—C1 | 1.3492 (13) | C3—H3C | 0.9800 |
| N2—N3 | 1.4003 (12) | O3—H3A | 0.867 (6) |
| N2—H2 | 0.901 (7) | O3—H3B | 0.859 (6) |
| C2—O2—C3 | 114.32 (7) | N1—C4—H4A | 109.5 |
| C2—N1—C1 | 106.92 (8) | N1—C4—H4B | 109.5 |
| C2—N1—C4 | 127.68 (8) | H4A—C4—H4B | 109.5 |
| C1—N1—C4 | 125.41 (7) | N1—C4—H4C | 109.5 |
| C1—N2—N3 | 112.77 (7) | H4A—C4—H4C | 109.5 |
| C1—N2—H2 | 128.1 (6) | H4B—C4—H4C | 109.5 |
| N3—N2—H2 | 119.1 (6) | O2—C3—H3D | 109.5 |
| C2—N3—N2 | 102.47 (7) | O2—C3—H3E | 109.5 |
| O1—C1—N2 | 128.74 (8) | H3D—C3—H3E | 109.5 |
| O1—C1—N1 | 126.94 (8) | O2—C3—H3C | 109.5 |
| N2—C1—N1 | 104.32 (7) | H3D—C3—H3C | 109.5 |
| N3—C2—O2 | 127.74 (8) | H3E—C3—H3C | 109.5 |
| N3—C2—N1 | 113.52 (9) | H3A—O3—H3B | 113.2 (8) |
| O2—C2—N1 | 118.75 (8) | ||
| C1—N2—N3—C2 | 0.0 | N2—N3—C2—N1 | 0.0 |
| N3—N2—C1—O1 | 180.0 | C3—O2—C2—N3 | 0.0 |
| N3—N2—C1—N1 | 0.0 | C3—O2—C2—N1 | 180.0 |
| C2—N1—C1—O1 | 180.0 | C1—N1—C2—N3 | 0.0 |
| C4—N1—C1—O1 | 0.0 | C4—N1—C2—N3 | 180.0 |
| C2—N1—C1—N2 | 0.0 | C1—N1—C2—O2 | 180.0 |
| C4—N1—C1—N2 | 180.0 | C4—N1—C2—O2 | 0.0 |
| N2—N3—C2—O2 | 180.0 |
Hydrogen-bond geometry (Å, º)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N2—H2···O3 | 0.90 (1) | 1.85 (1) | 2.7520 (15) | 174 (1) |
| O3—H3A···O1i | 0.87 (1) | 1.89 (1) | 2.7518 (18) | 174 (1) |
| O3—H3B···O1ii | 0.86 (1) | 1.94 (1) | 2.8024 (18) | 179 (1) |
Symmetry codes: (i) x−1/2, y, −z+1/2; (ii) x−1, y, z.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HB6806).
References
- Jin, D.-C., Zhang, W.-B., Piao, F.-Y. & Han, R.-B. (2011). Acta Cryst. E67, o1821. [DOI] [PMC free article] [PubMed]
- Liu, X.-F. & Liu, X.-H. (2011). Acta Cryst. E67, o202.
- Liu, X. H., Pan, L., Weng, J. Q., Tan, C. X., Li, Y. H., Wang, B. L. & Li, Z. M. (2012). Mol. Divers. doi:10,1007/s11030-011-9352-z.
- Liu, X. H., Tan, C. X. & Weng, J. Q. (2011). Phosphorus Sulfur Silicon Relat. Elem. 186, 558–564.
- Rigaku/MSC (2005). CrystalClear and CrystalStructure Rigaku/MSC Inc., The Woodlands, Texas, USA.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Tan, C. X., Shi, Y. X., Weng, J. Q., Liu, X. H., Li, B. J. & Zhao, W. G. (2012). Lett. Drug. Des. Discov. 9, 431–435.
- Ustabaş, R., Çoruh, U., Ünlüer, D., Hökelek, T. & Ermiş, E. (2010). Acta Cryst. E66, o2615. [DOI] [PMC free article] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812023380/hb6806sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812023380/hb6806Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812023380/hb6806Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


