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. 2012 Apr 27;28(13):1692–1697. doi: 10.1093/bioinformatics/bts244

Table 1.

Performance of the two-index diagonal algorithm (Algorithm 3) with various settings of the parameter α and a cutoff value 9 for diagonal scores on LYSATE dataset

α Running time (min) Speed up when compared with Algorithm 2 No. of correct identifications No. of incorrect identifications
2 31.5 14.6X 867 14
5 78.5 5.9X 1309 10
10 153.6 3.0X 1624 3
20 284.9 1.6X 1697 0