Abstract
Many age-related diseases are known to elicit protein misfolding and aggregation. Whereas environmental stressors, such as temperature, oxidative stress, and osmotic stress, can also damage proteins, it is not known whether aging and the environment impact protein folding in the same or different ways. Using polyQ reporters of protein folding in both Caenorhabditis elegans and mammalian cell culture, we show that osmotic stress, but not other proteotoxic stressors, induces rapid (minutes) cytoplasmic polyQ aggregation. Osmotic stress-induced polyQ aggregates could be distinguished from aging-induced polyQ aggregates based on morphological, biophysical, cell biological, and biochemical criteria, suggesting that they are a unique misfolded-protein species. The insulin-like growth factor signaling mutant daf-2, which inhibits age-induced polyQ aggregation and protects C. elegans from stress, did not prevent the formation of stress-induced polyQ aggregates. However, osmotic stress resistance mutants, which genetically activate the osmotic stress response, strongly inhibited the formation of osmotic polyQ aggregates. Our findings show that in vivo, the same protein can adopt distinct aggregation states depending on the initiating stressor and that stress and aging impact the proteome in related but distinct ways.
Keywords: protein homeostasis, polyglutamine, Huntington disease, osmoregulation
Organisms operate in a constantly changing environment, and their survival depends on their ability to adjust cellular physiology to adapt to new demands. The environment is known to impact many cellular processes, including the efficiency of protein folding. The process of adjusting the cellular protein-folding environment to match folding demands caused by environmental, physiological, or genetic stressors is termed “protein homeostasis.” Environmental stressors can alter protein homeostasis in several different ways. For example, heat shock and oxidative stress cause denaturation and misfolding of proteins via thermal disruption of free energy states and oxidation/glutathione conjugation of oxidized proteins, respectively (1–3). Changes in environmental osmolarity can also lead to disruption of protein folding through undetermined mechanisms (4, 5). Cells respond to these proteotoxic stressors through the activation of specific physiological response pathways that act to increase the abundance or activity of molecules that improve protein folding, such as protein or chemical chaperones (6, 7).
In addition to environmental stress, aging also results in disruptions in protein homeostasis. Although this is a feature of normal physiological aging, it is also observed in several pathological states. For example, in some age-associated neurodegenerative diseases, expanded CAG-repeat mRNAs give rise to unstable polyglutamine (polyQ)-repeat–containing proteins that self-assemble into proteotoxic protein aggregates (8). Proteins containing Q repeats above pathological thresholds of 30–40 place an excessive burden on cellular protein homeostasis systems, leading to age-dependent protein aggregation and cellular toxicity (9). PolyQ-GFP proteins have been used as fluorescent probes to understand the biochemical, biophysical, and genetic aspects of protein aggregation. In addition, polyQ reporters also serve as more general probes of the cellular protein-folding landscape in wide-ranging cellular and organismal contexts (10–14). Although most studies have used these polyQ substrates to investigate the relationship between protein folding and aging, the interactions between the environment and protein folding under in vivo conditions has only recently begun to be explored (4, 5).
Caenorhabditis elegans has emerged as a powerful model system for the in vivo study of stress-response pathways and mechanisms of protein folding. Worms exhibit robust, cell-specific, and nonoverlapping transcriptional responses to environmental stressors such as heat shock, oxidative stress, and osmotic stress (15–17). Expression of protein-folding “sensors,” such as polyQ proteins, gives rise to the formation of protein aggregation species that can be monitored in live animals (11, 18). Aging pathways influence the age-onset aggregation and toxicity of polyQ and other protein-folding sensors (11, 13, 19–23). Although aging and stress-response pathways are linked (24–27), it is not clear whether environmental stressors and aging affect protein folding and aggregation in similar or distinct ways.
Previous data showed that inhibition of protein homeostasis pathways limits survival of C. elegans in hyperosmotic environments (5) and activates osmosensitive gene expression without activating other stress-response pathways (28), suggesting that osmotic stress disrupts protein folding in a stress-specific manner. Indeed, recent studies in C. elegans show that both osmotic stress and aging enhance the misfolding of numerous cellular proteins (4, 23). However, the relationship between aging-induced and stress-induced protein misfolding has not been explored. Here we show that in both C. elegans and mammalian cells, osmotic stress, but not other stressors, induces the formation of polyQ aggregates that are distinct from aging-induced aggregates. Our findings suggest that stress and aging impact protein folding in distinct ways and that the same protein can adopt unique aggregation states in response to different physiological conditions.
Results
Hyperosmotic Stress, but Not Other Stressors, Induces PolyQ Aggregation in the C. elegans Intestinal Epithelium.
PolyQ proteins are widely used as sensors to investigate dynamic aspects of age-related protein folding in vivo (13, 20, 22, 23, 29). To investigate how the environment affects protein folding in a live-animal setting, we tested the effects of diverse stressors on an epithelial cell model of polyQ aggregation in the nematode C. elegans (18). We used worms containing an integrated transgene [derived from a previously constructed strain (18); SI Materials and Methods] that expresses a Q44-YFP protein under the control of the intestine-specific vha-6 promoter. Exposure of young adult Q44-YFP worms to hyperosmotic stress (500 mM NaCl) caused irreversible and rapid (τ1/2 = 48 ± 4 min) transition of Q44 proteins from a soluble to an aggregated form (Fig. 1 A and B). Aggregation could also be induced by exposure to either hyperosmotic sucrose or sorbitol (Fig. 1A), suggesting that aggregation is driven by osmotic and not ionic mechanisms. Aggregates formed in young adult animals grown at 20 or 25 °C but not in young adult animals of the same age grown at 16 °C (Fig. 2 A and B), suggesting that osmotically induced aggregation is not simply a stochastic response to alterations in cytoplasmic solute levels or cell volume. Aggregation was also significantly reduced in larval animals compared with young adults (Fig. 2C), suggesting that the effect of stress on aggregation is age-dependent. Aggregation was dependent on the level of hyperosmolarity (Fig. 1D; EC50 = 484 ± 19 mM NaCl for animals grown at 50 mM NaCl), and the aggregation threshold could be shifted to higher concentrations following adaptation to hypertonicity (Fig. 1D; EC50 for animals grown at 200 mM NaCl = 662 ± 28 mM NaCl). Acquisition of adaptation was detected after a 1-h exposure to 200 mM NaCl and appeared maximal by 3 h (Fig. S1A). Loss of adaptation was detected after 1 h of exposure to isotonic conditions and continued to diminish over 4 h (Fig. S1B). Osmotically induced aggregation was not a property of all polyQ proteins, and was only observed with Q repeats of >40 (Fig. 1F). Exposure to either heat shock (37 °C) or oxidative stress (200 μM juglone) failed to induce the aggregation of the polyQ reporter within the intestine (Fig. 1A). Taken together, these data show that hyperosmotic stress, but not other stressors, induces rapid Q length-dependent protein aggregation in C. elegans intestinal epithelial cells.
Osmotically Induced PolyQ Aggregates Are Distinct from Aging-Induced Aggregates.
Osmotically induced polyQ aggregates appeared distinct in both number and morphology from aggregates that formed in aged animals. For example, aging induced the formation of small numbers of aggregates within the cytoplasm (18) (Fig. 1C). In contrast, exposure to hyperosmotic stress induced the formation of a large number of small, fibrillar cytoplasmic aggregates (Fig. 1C). These foci could form either as large aging-like aggregates that become fragmented over time or as small, individual aggregates that are distinct from aging-type aggregates. Time-lapse imaging of Q44-YFP animals exposed to 500 mM NaCl (Movie S1) revealed that large aging-like aggregates never form during exposure to hyperosmotic stress. Instead, hundreds of smaller aggregates appear to arise simultaneously. Therefore, osmotically induced aggregates do not appear to form through fragmentation of large aggregates but rather through a large number of individual seeding events.
Osmotically induced aggregates also appeared morphologically distinct from aging-induced aggregates. Whereas age-induced aggregates exhibited a compact and spherical morphology (Fig. 1C, Left), osmotically induced aggregates exhibited irregular and fibrillar characteristics (Fig. 1C, Right). Osmotic Q44-YFP aggregates did not appear to be intermediates in the formation of aging aggregates, as their morphology remained stable over days. To determine whether the osmotically induced foci were in fact aggregates, we analyzed their biophysical properties using the fluorescence recovery after photobleaching (FRAP) technique (11, 12, 30, 31) (Fig. 3A). Consistent with their soluble and freely diffusible nature, nonaggregated, cytoplasmic Q44-YFP exhibited rapid fluorescent recovery following photobleaching (Fig. 3C). However, aging-induced Q44-YFP aggregates exhibited little recovery (Fig. 3C). Like age-induced Q44-YFP aggregates, osmotically induced Q44-YFP foci also failed to recover to wild-type levels, although the extent of fluorescent recovery was significantly larger than the recovery observed in age-induced aggregates, suggesting that osmotically induced aggregates contain a larger pool of exchangeable protein (Fig. 3C). The differences in aggregate morphology and diffusion rates suggest that aging and osmotic polyQ aggregates may represent structurally distinct aggregate species.
To further test this hypothesis, we compared aging and osmotic polyQ aggregates using biochemical and cell biological approaches. We isolated both aggregate species from C. elegans and examined their chemical sensitivity to SDS extraction. Sequential extraction of purified aging aggregates (from day 4 adults) or osmotic aggregates (from day 1 adults exposed to 500 mM NaCl for 4 h) with increasing concentrations of SDS showed that osmotically induced aggregates were significantly more resistant to SDS extraction than aging-induced aggregates (Fig. 3 B and D), suggesting differences in structure between the two aggregate species. We hypothesized that such differences in aggregate structure may cause cells to recognize each aggregate species in different ways, possibly via differences in their association with aggregate-interacting proteins (AIPs). Ubiquitin is a well-known AIP that associates with aging polyQ aggregates in mammalian cells (32). Using a ubiquitin-specific antibody, we found that age-induced polyQ aggregates were associated with ubiquitin in C. elegans intestinal cells (46/51 aggregates; 90.1%). However, osmotic aggregates showed no evidence of association with ubiquitin (0/74 aggregates; P < 0.001, Fisher’s exact test; Fig. 3E). Taken together, these data demonstrate that osmotically induced Q44 foci exhibit the properties of aggregates but that they differ from age-induced aggregates in their morphological, biophysical, biochemical, and cell biological characteristics.
Exposure of Mammalian Cells to Hyperosmotic Stress Induces Rapid Cytoplasmic Protein Aggregation.
To determine whether the formation of polyQ protein aggregates by osmotic stress is specific to C. elegans or also occurs in other species, we expressed a previously described polyQ protein containing the first exon of the Huntington gene (HTT-Q19-CFP or HTT-Q72-YFP) in mammalian HEK293 cells (14). Under isotonic conditions, cells expressing GFP alone or HTT-Q19-CFP exhibit diffuse cytoplasmic and nuclear staining, whereas cells expressing HTT-Q72-YFP exhibit nuclear aggregation (primarily a single large nuclear aggregate in each cell) with some diffuse cytoplasmic staining (Fig. 4 A and C). Following a 3-h exposure to 200 mM NaCl, HTT-Q72-YFP–expressing cells, but not GFP or HTT-Q19-CFP–expressing cells, exhibited an increase in large nuclear aggregates as well as the appearance of small, irregularly shaped aggregates, which were not present in unstressed cells (Fig. 4 B and D). As in C. elegans, the formation of osmotically induced aggregates in HEK293 cells was osmotic rather than ionic in nature, because aggregates were induced using the nonionic solute sorbitol (Fig. S2). Whereas the large HTT-Q72-YFP aggregates colocalized with nuclear Hoechst dye staining as previously reported (14), the small osmotic stress-induced aggregates did not colocalize with Hoechst dye, indicating that they were cytoplasmic in nature (Fig. S3). Of several tested stressors, only osmotic stress induced the formation of cytoplasmic protein aggregates (Fig. S4). Cells with cytoplasmic aggregates were alive, as assessed by their ability to exclude the vital dye Sytox (Fig. S5). As in worms, we were able to detect ubiquitin association with dense aging-type aggregates (11/247 aggregates; 4.4%), but we never observed an association between ubiquitin and osmotically induced aggregates (0/118 aggregates; P = 0.0191, Fisher’s exact test). The significant difference in the fraction of ubiquitin-positive aging-type aggregates between C. elegans and HEK cells is likely due to constitutive cell division present in HEK cells, which does not occur in postmitotic C. elegans intestinal cells. Overall, these data demonstrate that osmotically induced cytoplasmic polyQ protein aggregation also occurs in mammalian cell culture and that such aggregates are morphologically and cell biologically distinct from previously described aging-type polyQ aggregates.
Genetic Activation of the Osmotic Stress Response, but Not Insulin-Like Growth Factor Signaling, Confers Specific Protection Against Stress-Induced Aggregation.
Reduced signaling of the insulin/insulin-like growth factor (IGF) pathway protects C. elegans from several environmental stressors, including hyperosmotic stress (25, 27, 33). Protection against hyperosmotic stress depends on the activity of several protein chaperones that are up-regulated by the FOXO transcription factor daf-16 (33). Such protection could occur either by preventing the formation of osmotically induced protein aggregates or by mitigating the physiological effects of such aggregates. To distinguish between these possibilities, we crossed the daf-2(e1370) mutant, which causes constitutive FOXO signaling and protects against hyperosmotic stress, into the threshold-length polyQ lines. We confirmed that in these polyQ backgrounds, daf-2(e1370) still activates DAF-16/FOXO signaling (i.e., formation of dauer larvae at the restrictive temperature) and provides protection against hyperosmotic stress [increased 24-h survival on 500 mM NaCl (33)]. The daf-2(e1370) mutation had no effect on osmotically induced polyQ aggregate formation in muscle (Fig. S7), and caused only a modest delay in the kinetics of osmotically induced aggregate formation in the intestine (Fig. 5 A and B). By contrast, daf-2 mutants exhibit a substantial reduction in the formation of intestinal age-induced polyQ aggregates (Fig. S6). Therefore, a reduction in IGF signaling strongly attenuates the formation of aging-induced Q44-YFP aggregates but has substantially weaker effects on the formation of osmotically induced Q44-YFP aggregates.
Another signaling pathway that protects C. elegans from hyperosmotic stress is the osmotic stress resistance (Osr) pathway (17, 34–36). Previously, we and others showed that Osr mutants, such as osm-7 and osm-8, constitutively activate an osmosensitive gene expression program and have high levels of the organic osmolyte glycerol (17, 28, 35). However, these mutants do not exhibit transcriptional patterns characteristic of the response to other stressors such as heat shock or oxidative stress (17), and in the case of the osm-8 mutant are resistant to lethal levels of hyperosmotic stress but not heat shock or oxidative stress (34). We crossed the Osr mutants osm-7(n1515) and osm-8(n1518) into the vha-6p::Q44-YFP background and found that osmotically induced aggregation was strongly attenuated (Fig. 5 C and D). The protective effect of the Osr mutants is not limited to the intestine, because the Osr mutants also protect muscle cells against osmotically induced aggregation (Fig. S7). We also found that the Osr mutants osm-7 and osm-8 provided significant protection against aging-induced polyQ aggregation in the intestine, although such protection was significantly weaker than that provided by daf-2(e1370), which does not contain elevated levels of glycerol (33) (Fig. S6). Together, these data show that genetic and physiological activation of the osmotic stress-response pathway, but not the IGF-signaling pathway, attenuates stress-induced polyQ aggregation in multiple tissues. Furthermore, the Osr pathway provides weak but significant protection against aging-induced polyQ aggregation.
Discussion
Aging and the environment are thought to strongly influence protein-folding processes, but in vivo comparisons between the effects of aging and the environment on protein folding have so far not been made. By taking advantage of a metastable polyQ-YFP reporter of protein folding in both C. elegans and mammalian cells, we gained insights into these processes in several ways. First, different environmental stressors do not all cause the same type of polyQ misfolding but rather evoke specific types of protein damage. Second, osmotic stress-induced polyQ aggregation is a consequence of osmotic stress in both C. elegans and mammalian cells. Third, osmotic stress-induced polyQ aggregates are distinct from aging-induced polyQ aggregates, based on multiple criteria. Finally, two pathways that promote survival of C. elegans in hyperosmotic environments, the IGF pathway and the Osr pathway, have different effects on stress-induced polyQ protein aggregation and likely protect C. elegans from environmental stress through distinct mechanisms. Together, these data provide insights into the specific effects of stress and aging on protein folding in vivo.
Although aging and osmotic stress both cause polyQ aggregation, our findings reveal differences in the nature of the aggregates that form under these conditions. Before our studies, these differences were not appreciated. Several pieces of data support the conclusion that osmotically induced polyQ aggregates are intrinsically different from aging-induced polyQ aggregates, although we note that our data do not allow us to resolve potential differences in the structure of the monomeric Q44-YFP protein. First, increased FRAP recovery and resistance to SDS extraction indicate that osmotic aggregates contain different underlying aggregate structure from aging aggregates. Second, the lack of ubiquitin association with osmotically induced polyQ aggregates suggests the two aggregate species exhibit distinct protein interactions within the cell. Finally, Osr-regulated stress pathways, but not daf-2–regulated aging pathways, protect against stress-induced polyQ aggregation. The differential response of stress-induced aggregates to these two signaling pathways suggests that different mechanisms protect cells against stress and aging aggregates. However, it is important to consider that the polyQ proteins are nonnative substrates. In the future, it will be important to identify native cellular proteins that aggregate in response to stress and aging in different tissues, compare their underlying aggregate structures and interacting proteins, and determine whether such native protein aggregates respond differently to activation of stress- and aging-signaling pathways. Toward these goals, recent studies identified native proteins that aggregate with age (23), whereas other studies showed that yet to be identified native proteins aggregate in response to osmotic stress (4).
Genetic studies have shown an important role for both the IGF and Osr pathways in mediating protection against hyperosmotic stress (33, 36). The Osr mutants exert their effects through constitutive activation of osmosensitive signaling and organic osmolyte production (17, 34). Previous data suggested that exogenous administration of the nonnative organic osmolyte trehalose inhibits protein aggregation and pathophysiology in diseases of protein misfolding (37–39). However, our data show that genetic activation of a native osmolyte accumulation-signaling pathway in animals can also protect against protein aggregation. Although our time course studies reveal a tight correlation between acquisition and loss of protection via adaptation (Fig. S1) and the gain and loss of the organic osmolyte glycerol (40), it is currently unclear whether this effect is mediated by the increased production of osmolytes or through other mechanisms activated by the Osr and osmotic adaptation pathway(s). A better understanding of these mechanisms might be leveraged to delay or prevent protein aggregation-based disease phenotypes in mammals.
Whereas Osr mutants activate native osmotic adaptation pathways, IGF mutants do not activate these pathways. Instead, IGF-mediated protection against hyperosmotic stress requires the function of several heat shock proteins (33), suggesting that IGF signaling prevents and/or protects against the consequences of protein misfolding. Currently, there are data supporting both of these possibilities. For example, our data suggest that for polyQ proteins, IGF signaling does not prevent stress-induced aggregation. Previous data demonstrating that IGF signaling protects C. elegans from Aβ toxicity without reducing aggregation supports such a possibility (41). However, daf-2 might not protect against stress-induced polyQ protein aggregation simply because it occurs rapidly (compared with aging-induced aggregate formation, which occurs over a time course of days), and daf-2 up-regulated processes (i.e., autophagy, chaperone proteins, protein turnover, etc.) act too slowly to prevent rapidly forming aggregates. Arguing against this possibility is a recent study demonstrating that daf-2 mutants inhibit the formation of as yet unidentified detergent-insoluble protein species induced by osmotic stress (4). Therefore, IGF signaling could have dual roles in protecting cells against proteotoxicity (41).
In conclusion, using a polyQ protein as a sensor of cellular protein folding, we have shown that environmental stress and aging place different protein-folding burdens on both C. elegans and mammalian cells. Moreover, we show that the same cellular protein can adopt distinct aggregation states depending on whether it misfolds in the context of an environmental stressor or aging. Such distinct aggregation states may provide a sensor that allows cells to distinguish between different proteotoxic stressors and activate physiological responses through appropriately tuned signaling pathways that detect specific forms of protein damage.
Materials and Methods
Stress Exposures.
Young adult C. elegans were raised on standard nematode growth media plates at 20 °C (unless noted otherwise) and exposed to the indicated stressors on plates with Escherichia coli strain OP50 as previously described (17, 34). All oxidative stress compounds were included in the growth agar and, in the case of juglone, poured immediately before use. Before assays, worms were raised on standard NGM plates fed OP50 at 20 °C (unless noted otherwise). All stress assays were performed on day 1 (24 h post-larval stage 4) animals. At this time point, drIs20 animals do not contain age-induced polyQ aggregates. “Aging” assays used animals on day 3–4 of adulthood, except for animals in Fig. S6, which used animals on day 7 of adulthood. All chemicals were obtained from Sigma.
Statistics.
Aggregation data and Western blot quantification were analyzed using either the Student’s t test or ANOVA, as implemented in GraphPad Prism or Microsoft Excel. P values <0.05 were taken to indicate significance.
Additional details of experimental procedures are provided in SI Materials and Methods.
Supplementary Material
Acknowledgments
We thank Danielle Garsin (University of Texas, Houston) for providing the vha-6p::polyQ strains and vectors; Robert Baloh (Washington University School of Medicine) for providing the polyQ HEK cell expression constructs; and David Raizen, Jessica Tanis, and the anonymous reviewers for constructive comments on the manuscript. Some nematode strains used in this work were provided by the Caenorhabditis Genetics Center, which is funded by the National Institutes of Health (NIH) National Center for Research Resources. This work was supported by NIH Grants R01AA017580 (to T.L.) and R01NS052325 and R21NS064232 (to R.G.K.).
Footnotes
The authors declare no conflict of interest.
This article is a PNAS Direct Submission.
This article contains supporting information online at www.pnas.org/lookup/suppl/doi:10.1073/pnas.1108766109/-/DCSupplemental.
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