Abstract
Tight junctions (TJs) are dynamic cellular structures that are critical for compartmentalizing environments within tissues and regulating transport of small molecules, ions, and fluids. Phosphorylation-dependent binding of the transmembrane protein occludin to the structural organizing protein ZO-1 contributes to the regulation of barrier properties; however, the details of their interaction are controversial. Using small angle X-ray scattering (SAXS), NMR chemical shift perturbation, cross-saturation, in vitro binding, and site-directed mutagenesis experiments. we define the interface between the ZO-1 PDZ3-SH3-U5-GuK (PSG) and occludin coiled-coil (CC) domains. The interface is comprised of basic residues in PSG and an acidic region in CC. Complex formation is blocked by a peptide (REESEEYM) that corresponds to CC residues 468–475 and includes a previously uncharacterized phosphosite, with the phosphorylated version having a larger effect. Furthermore, mutation of E470 and E472 reduces cell border localization of occludin. Together, these results localize the interaction to an acidic region in CC and a predominantly basic helix V within the ZO-1 GuK domain. This model has important implications for the phosphorylation-dependent regulation of the occludin∶ZO-1 complex.
Keywords: membrane-associated guanylate kinase, tricellulin, calmodulin
Tight junctions (TJs) are highly polarized gates that control the flux of fluids, proteins, and even ions across sheets of endothelial or epithelial cells (1, 2). These barriers function in a range of tissues, including the vasculature of the central nervous system, kidney, and gut epithelium. Dysregulation of barrier properties is associated with a host of disease states including cancer, stroke, diabetic retinopathy, and inflammatory bowel syndrome (3–5). Furthermore, viral and bacterial pathogens exploit specific TJ proteins to gain access to host cells. Thus, understanding the contribution of TJ components in barrier formation and regulation may aid the development of therapies to restore barrier properties, control barrier properties to promote drug delivery to regions of the CNS, and for the development of novel antibacterial and antiviral compounds.
Occludin is an integral membrane, vesicle-trafficking, MAL and related proteins for vesicle trafficking and membrane link (MARVEL) protein (6), that has a role in regulating TJ properties (7). For example, in endothelial cells, it regulates TJ barriers in response to cytokines, such as IFN-γ (8, 9), and growth factors, such as VEGF (10). Removal of the cytoplasmic C-terminal coiled coil domain (CC; residues 413–522) of occludin leads to cytoplasmic localization with increased tracer flux through the junctions and an inability to maintain the apical localization of marker proteins (11, 12), identifying the CC as a key element in regulation (13). The CC directly associates with the SH3-U5-GuK domains of the membrane-associated guanylate kinase homolog (MAGUK) protein, ZO-1 (14). ZO proteins are characterized by their core PDZ3-SH3-GuK (PSG) domains, preceded by two additional PDZ domains and separated by unique regions (U1–6), each with distinct functions (15).
The interaction of ZO-1 and occludin is modulated by phosphorylation of residues in CC that affects the properties of TJs (7). Biochemical and biophysical experiments have led to two distinct models for the complex (Fig. 1). In the first, (Model 1) a cluster of basic residues on CC (K433, K444, K485, K488, K504, and K511) form the interface with ZO-1 (16). In the second (Model 2), the interface was formed between the acidic surface of CC and regions of the ZO-1 U5 and GuK domain (17–19). The crystal structures of ZO-1 PSG and SH3-GuK domains (20–22) seemed to support the Model 2, since the surface of the GuK domain is largely basic (Fig. 1B). The potential contributions of the ZO-1 U6 (not part of the minimal CC binding domain) or U5 motifs to the interface are unknown as they are absent from the structures. Thus, no clear consensus exists on how occludin and ZO-1 interact or how phosphorylation modulates this interaction.
In this study, we present a structural model for the minimal complex between occludin and ZO-1 (CC∶PSG) where residues 468–475 (REESEEYM) in the CC acidic head directly interact with helix V of ZO-1 GuK. This model is consistent with our data from SAXS, NMR, in vitro, and ex vivo binding studies and in transiently transfected Madin–Darby canine kidney (MDCK) cells. Furthermore, we found that a phosphopeptide (YREEpS471EEYM) bound approximately 20-fold tighter than its nonphosphorylated equivalent to PSG, implicating S471 phosphorylation in regulating binding. In light of these results, we discuss roles for CC phosphorylation in complex stability and TJ regulation.
Results
CC and PSG Form an Extended Complex in Solution.
To discriminate between the opposing models for the ZO-1∶occludin complex (16, 19), we measured the SAXS curves of the minimal binding domains (CC and PSG) alone and in their binary complex (Fig. 2A). From the Guinier plot, all samples were monodisperse (Fig. 2A and SI Appendix, Fig. S1A) and monomeric, based on the relative scattering intensities at zero angle and Porod volumes of CC and PSG. The molecular weight of the CC∶PSG complex was consistent with a 1∶1 stoichiometry, and this was confirmed in a titration experiment (SI Appendix, Fig. S1B). The radius of gyration (Rg) extrapolated to zero concentration of CC and PSG were 23.2 ± 0.4 Å (approximately 24 Å, 1WPA.PDB, 3G7C.PDB) (7, 16) and 28.9 ± 0.3 Å (approximately 29 Å, 3SHW.PDB) (22), respectively, and 35.6 ± 0.6 Å for the complex (Fig. 2A). These values correspond to a centers-of-mass separation of 51 ± 2 Å from the parallel axis theorem (23), suggesting an extended complex. Further, the distance distribution functions, P(r), and maximum chord length, Dmax, for the CC and PSG alone and in complex support this conclusion (Fig. 2B). The shape of the P(r) curve for CC is indicative of a rod (Dmax = 80 Å), while PSG is more compact (Dmax = 95 Å), consistent with their crystal structures (CC Dmax approximately 75 Å, 1XAW.PDB; PSG Dmax approximately 93 Å, 3SHW.PDB). The complex is significantly longer (Dmax = 140 Å).
The SAXS-derived molecular envelope of CC was rod-like (Fig. 2C), while PSG was boot-shaped in high or low NaCl (Fig. 2D and SI Appendix, Fig. S1 C and D) with the SH3 at the heel, GuK forming the ankle, and PDZ3 the toes. The envelope of the complex was extended at the ankle, presumably due to binding of the CC (Fig. 2E). Crystal structures of CC and PSG were fit as rigid molecules to the SAXS data (SI Appendix, Fig. S2) (24), either unconstrained or constraining the relative placement of CC and PSG (SI Appendix, Fig. S2). Constraining either E470 or 472 (CC, acidic head) to be < 7 Å from K760 (PSG, GuK, helix V) resulted in the best fit to the data (SI Appendix, Fig. S2) and gave marginally better χ2 values than without constraints. This arrangement is consistent Model 2 (17–19). Constraints involving K433 (CC), to test Model 1, gave much poorer fits to the scattering data (SI Appendix, Fig. S2). Moreover, constraining the model to be a homodimer of PSG, rather than a CC∶PSG complex, fit the data poorly (χ2 = 3.1), consistent with the observation that dimerization occurs through PDZ2, which was not in our construct (25).
The binding of PSG to CC was characterized in a quantitative capture assay (SI Appendix, Fig. S3). PSG (2 μM) was soluble and did not bind to GST beads alone or in the presence of GST, even in 50 mM NaCl. It was efficiently captured on these beads by GST-CC (SI Appendix, Fig. S3A, 2 μM). The amount captured was saturable and the maximum relative intensity for the captured PSG and CC was consistent with a 1∶1 stoichiometry at 50 mM NaCl (SI Appendix, Fig. S3 B and C). Under these conditions, the apparent dissociation constant, Kd, was 1.7 ± 0.2 μM and increased with NaCl concentrations (SI Appendix, Fig. S3C, 6 ± 1 μM at 100 mM NaCl; 12 ± 2 μM at 150 mM NaCl,). These data indicate a net displacement, Δn, of 1.7 Na+ plus Cl- in forming the GST-CC∶PSG complex (SI Appendix, Fig. S3C), consistent with an ionic interface.
CC Binds to Basic Residues in Helix V of the ZO-1 GuK Domain.
To define the CC binding surface on PSG, we focused on the region in and around residues 749–768 (helix V, GuK), a conserved, predominantly basic region that contributes to calmodulin (CaM) binding (20). The CaM∶PSG complex by SAXS was elongated (Rg 35.4 ± 0.4 Å) with a 1∶1 stoichiometry. The SAXS-derived envelope suggested that CaM bound to PSG in a similar position to CC (SI Appendix, Fig. S4). Further, CaM inhibited, in a dose-dependent manner, the capture of PSG by GST-CC (Fig. 3A), suggesting that they share a common binding site on ZO-1. The basic residues in helix V GuK are a primary determinant of CaM binding (20). Therefore, we tested the effect on CC binding of the variants used in the CaM studies [(20); K749D/R752D/K753E (PSG 3D/E) and K760E/K763E (PSG 2D/E) in helix V of ZO-1 GuK)]. Both PSG variants were captured in significantly reduced amounts by GST-CC (Fig. 3B), demonstrating that CC and CaM are direct competitors for PSG and share a binding site that includes basic residues within helix V GuK.
The Acidic Head of CC Forms the Interface.
In the optimal SAXS-based model, the acidic head of CC forms part of the ZO-1 binding site; however, the data does not conclusively exclude binding via the opposite end of CC near its N and C termini (residues 414–439 and 508–522). To resolve this question, we performed NMR chemical shift perturbation and cross-saturation experiments. Backbone resonance assignment of 109 of 112 residues in CC was accomplished with the transverse relaxation optimized spectroscopy (TROSY) form of standard triple resonance experiments (SI Appendix, Fig. S5) (26, 27) and provided the basis for identification of the CC-binding surface. Chemical shift perturbation experiments comparing CC and CC∶PSG identified two clusters of residues that showed small but detectable changes in the TROSY spectrum. The first cluster was located within helix 1 (N454, E456, and R459) and the second in the acidic head (Fig. 4A and SI Appendix, Fig. S6; L464, D465, Y467, E470, S471, E473, M475, and A478). No clusters in chemical shift perturbations were observed for residues at the opposite end of the CC. The observed chemical shifts are relatively small because the CC∶PSG interaction is most likely dominated by side chains with little perturbation of the backbone environment. There was further evidence of complex formation when comparing the TROSY spectra of 15N, 2H labeled (random fractionally deuterated) PSG with and without unlabeled CC (SI Appendix, Fig. S7). Upon addition of CC numerous resonances appeared between 8.1–8.5 ppm 1H and 120–126 ppm 15N and a large peak associated with an unfolded resonance signal disappeared, suggesting some structural rearrangement in PSG upon complex formation.
To determine whether the chemical shift perturbations result from direct binding or allosteric effects, NMR cross-saturation experiments (28) were performed. Perdeuterated [15N]-CC was bound to protonated, unlabeled PSG at 2∶1, 1∶1, and 1∶2 molar ratios. Due to the tendency of free PSG to aggregate at high protein concentrations and prolonged incubation at 27 °C, total PSG was kept at 100 μM and short collection times were used (< 24 h). To overcome the sensitivity limitations, buffers containing 40% and 70% D2O were used instead of the more usual 90% D2O. To avoid potential false positives arising from the spin diffusion effect, we used a conservative criterion for identifying perturbed resonances. L464, D466, Y467, and A478 were at the interface in these experiments (Fig. 4B and SI Appendix, Fig. S8). No residues around the N and C termini showed significant cross-saturation relaxation effects. Taken together, the SAXS and NMR experiments demonstrate that CC binds with its acidic head in proximity to PSG, while the opposite end, containing its N and C termini, is furthest from this interface.
To probe the contribution of specific residues in the acidic head to complex stability, the effect of single (E470K, E472K, and E473K) and double (D465K/E469K) substituted variants of GST–CC were evaluated in PSG capture assays (Fig. 4C). The E473K variant marginally reduced capture (82% of wt, p < 0.001) while more dramatic reductions were observed for the E470K, E472K, and D465K/E469K variants [43%, 47%, and 23% of wt (all p < 0.001), respectively]. The E470K, E472K, and D465K/E469K GST-CC variants also showed reduced capture of full-length ZO-1 from MDCK cell lysates (Fig. 4D; 18%, 49%, and 20% of wt, respectively, p < 0.001) confirming the importance of the negative charges on CC in mediating its interaction with ZO-1. By contrast, the K433D substitution, located on the basic face of CC, displayed opposite effects in vitro (Fig. 4C) and in lysate (Fig. 4D). In vitro, K433D enhanced capture of PSG (136% of wt, p < 0.001) but, as reported previously (16), it abolished the interaction with full-length ZO-1 (14% of wt, p < 0.001), suggesting that K433 may be involved in a contact present in full-length ZO-1 (29) but not in PSG. A possible candidate is the acidic U6 motif (residues 803–888), that regulates complex stability but is not required for the binding of the minimal interacting domains (29). However, we cannot exclude other possibilities, such as post-translational modifications of ZO-1 or additional factors present in the extract.
E470 and E472 in CC Contribute to TJ Localization in Cells.
Since E470K and E472K substitutions had profound effects on ZO-1 binding, full-length V5-tagged occludin or variants containing these substitutions were transiently transfected into MDCK cells. Expression of wt occludin resulted in immunostaining at the cell membrane, with the majority occurring at cell∶cell contacts, colocalizing with ZO-1 and endogenous occludin (Fig. 5A). The 3D rendering of these confocal images revealed good colocalization of wt occludin with ZO-1 at the apical membrane border (Fig. 5B). By contrast, the E470K and E470K/E472K occludin variants showed increased localization in the cytoplasm and at the lateral border (Fig. 5B) and reduced staining at cell contacts, with loss of ZO-1 colocalization. To quantify the change in localization, the ratio of Triton X-100-soluble and insoluble expressed occludin was compared to ZO-1. As expected, the majority of wt occludin was found in the Triton X-100-insoluble fraction, along with ZO-1. However, the E470K and E470K/E472K variants were located in the soluble fraction, with a 66% (p < 0.01) decrease in the ratio of Triton X-100-insoluble∶soluble occludin for the double variant (SI Appendix, Fig. S9). These results suggest that the interaction of ZO-1 with the acidic head of CC is necessary for either the transport to, or maintenance of, occludin at TJs.
Phosphorylation of S471 May Enhance Occludin∶ZO-1 Complex Stability.
The two acidic residues, E470 and E472, with a key role in localizing occludin at TJs, flank S471, a previously identified phosphosite (7). To investigate the effect of S471 phosphorylation, occludin containing a S471D substitution (S471D) was transiently transfected into MDCK cells. Using confocal microscopy, S471D demonstrated good apical border colocalization with ZO-1 (Fig. 5).
To further define the effect of S471 phosphorylation, peptides with and without a phosphogroup on S471 (residues 468–475, REESEEYM, and REEpSEEYM) were tested for their ability to inhibit PSG capture by GST-CC (Fig. 6A). Both peptides significantly inhibited the capture of PSG [19% and 33% of wt, (p < 0.001), respectively], with the phosphorylated peptide being more efficient than the nonphosphorylated peptide (p < 0.01). This observation was similar in experiments to capture endogenous ZO-1 from MDCK cell lysates (Fig. 6B; 32% and 41%, respectively, p < 0.05). By contrast, peptides containing S490 (residues 486–494, QVKGSADYK and QVKGpSADYK), a second validated phosphosite in CC (7, 10) and a control peptide encompassing K433 (residues 430–438, QLYKRNFDT) did not significantly alter capture efficiency in vitro or ex vivo.
To quantitate binding of the S471-containing peptides, a fluorescently labeled peptide corresponding to residues 467–475 CC [FITC—(miniPEG)—YREESEEYM] was synthesized. Based upon the changes in fluorescent anisotropy of this peptide as a function of PSG concentration, the Kd for labeled peptide binding was 1.8 ± 0.4 μM (Fig. 6C and SI Appendix), although the fluorophore and the linker appeared to contribute slightly to the interaction. In competition assays, the equivalent unlabeled peptide (Ac—YREESEEYM) bound with a Kd of 15 ± 3 μM, while the serine phosphorylated peptide (Ac—YREEpSEEYM) increased the affinity by approximately 20-fold (Kd = 0.70 ± 0.05 μM). By contrast, a scrambled peptide (Ac-EEYRSYMEE) did not affect binding of the labeled peptide (Fig. 6C). Taken as a whole, these results confirm that the acidic head of CC directly mediates its interaction with the GuK domain of PSG with high affinity and phosphorylation of S471 enhances occludin∶ZO-1 complex stability.
Discussion
Previous studies of TJs have established a close association between the scaffolding protein, ZO-1, and the transmembrane protein, occludin, and identified multiple phosphorylation sites as potential regulators of their interaction. However, the molecular details of this interaction were unclear. The results described here suggest a model for complex formation utilizing two distinct interfaces that contain phosphorylatable residues within or around their periphery (Fig. 7). The core of the interface is electrostatic, involving D465, E469, E470, E472, and E473 in CC and residues K749, R752, K753, K760, and K763 in PSG. Consistent with this model, the stability of the complex is salt-dependent. In addition, helix V (residues 751–765) (20) is used by two other MAGUK family members for binding their phosphosites (30, 31). Finally, the coiled-coil domain of tricellulin, a homolog of occludin present at tricellular junctions, lacks the acidic residues in its head domain and does not interact strongly with PSG in SAXS and capture assays (SI Appendix, Fig. S10) (32).
The argument for a second binding interaction between occludin and ZO-1 is based upon differences in the effects of some amino acid substitutions in CC on their capture efficiency of PSG and longer ZO-1 constructs. Charge reversal substitutions of lysine residues in the basic face of CC did not affect capture of PSG in vitro but, consistent with earlier data, showed reduced capture of longer ZO-1 constructs (1–888 and full-length ZO-1) that contain U6 (16). Therefore, we speculate there is a second ionic interface that involves interactions between the basic face of CC, including K433, and acidic residues on the surface of the full-length ZO-1, perhaps within the U5 or U6 motifs (16, 29, 33) or involving a bridge with another cellular factor. The presence of this secondary interface may enhance the stability of the complex in the cellular environment and/or contribute to the regulation of the complex. One very attractive possibility is that binding of ZO-1 binding to the secondary interface controls access to the lysine-rich face of CC, which contains seven of the 12 conserved lysine residues in occludin, and thus its ubiquitin-dependent endocytosis observed in endothelial cells (10).
In vivo, the occludin∶ZO-1 interaction is modulated by phosphorylation events (7, 34–38). In occludin, four of these sites segregate structurally and possibly functionally—two adjacent to the primary interaction site (S471 and Y474) in the acidic head and two in the secondary interface (S490 and S508) on the basic face. Y474 phosphorylation is associated with binding p85 of phosphatidyl inositol 3-kinase at the leading edge of migrating cells (39) while S490 and S508 are associated with vascular permeability after VEGF treatment (7) or HIV encephalitis (40). Our results suggest a role for S471 phosphorylation in ZO-1 binding. The CC peptide 468–475 containing S471 and Y474, is more effective at blocking PSG and ZO-1 capture when phosphorylated at S471 (pS471), suggesting that phosphorylation here may enhance complex formation in vivo. Indeed, in MDCK cells, the S471D-occludin variant exhibited at least as good colocalization with ZO-1 as wt (Fig. 5). The results are consistent with the recent finding that the GuK domain has evolved as a phosphopeptide-binding module (31). The Kd for pS471 peptide binding to PSG (0.7 μM) is very similar to that of p-LGN binding to SAP97 SH3-GuK (0.22 μM). However, the Kd values of the equivalent nonphosphorylated peptides are different (S471 to PSG, approximately 15 μM; LGN to SPA97, > 100 μM). Interestingly, occludin possesses the requisite arginine at -3 relative to the phosphosite of GuK binding peptides (31); however, ZO-1 does not contain the sequence required for high affinity binding. These results are consistent with S471 phosphorylation strengthening or modulating binding to ZO-1 rather than providing an all or none binding motif. By contrast, phosphorylation of S490 reduces its interaction with endogenous ZO-1 (7). While the effect of S508 phosphorylation on ZO-1 binding is not known, its location adjacent to K504 and K511, which are required for complex formation with endogenous ZO-1 (16), suggests that S508 phosphorylation would reduce ZO-1 binding. Further, phosphorylation of either S490 or S508 correlates with opening of the barrier in endothelial cells (7, 40), suggesting that the basic face of CC is involved in regulating TJ barrier properties in vivo. Five additional phosphosites that lie in a conserved region just upstream of CC (Y398, Y402, T403, T404, and T408) also regulate phosphorylation-dependent complex formation. Based on geometric considerations, they cannot exert their effect directly at the primary interaction site and may modulate binding through a different site, perhaps close to the proposed secondary interaction site.
In summary, our model for the complex between CC and PSG, provides a framework for understanding the functional role of the occludin∶ZO-1 complex in TJ permeability via occludin phosphorylation and offers new insight into the regulation of barrier properties. These studies highlight the direct interaction of the CC, through its acidic head, with the basic region surrounding helix V in PSG. Undoubtedly, additional contacts exist in the larger TJ complex that contribute to complex organization; however, the relative contribution and mechanism of action of occludin phosphorylation on its interaction with ZO-1 is emerging. A complete understanding of the interface may uncover new therapeutic strategies to selectively alter TJ permeability in the treatment of disease or delivery of drugs to the central nervous system.
Methods
E. coli expressed human CC and human PSG were expressed as tobacco etch virus (TEV) protease cleavable His6-tagged fusion proteins; the TEV-cleaved form of each was used for SAXS and NMR experiments. A GST-tagged version of the CC (413–522) was expressed and purified using standard protocols (SI Appendix, Methods) and used in vitro and in cell lysate capture assays. The final concentrations of proteins used in individual experiments are given in the text and the figure legends. SAXS experiments were conducted at X9, National Synchrotron Light Source, Upton, NY, using a standard configuration and software. NMR experiments were conducted on Bruker Avance 600 MHz and 850 MHz spectrometers, equipped with cold probes using standard protocols. In-cell based assays were conducted with MDCK cells using standard protocols. Additional details are available in the SI Appendix.
Supplementary Material
ACKNOWLEDGMENTS.
We thank Drs. Marc Allaire and Lin Yang for discussions and technical assistance with small angle X-ray scattering. We thank the Pennsylvania Lions Sight Conservation and Eye Research Foundation (J.M.F.), the American Diabetes Association Grant 7-07-RA-34 (to J.M.F.), National Eye Institute Grant EY012021 (to D.A.), and the Pennsylvania Tobacco Funds (J.M.F., F.T., and D.A.) for financial support. The Kellog Eye Center imagine core is supported by National Institutes of Health Grants EY07003 and P60DK020572. The National Synchrotron Light Source and beamline X9 is supported by the US Department of Energy, Office of Science, Office of Basic Energy Sciences, under Contract No. DE-AC02-98CH10886.
Footnotes
The authors declare no conflict of interest.
This article is a PNAS Direct Submission.
This article contains supporting information online at www.pnas.org/lookup/suppl/doi:10.1073/pnas.1121390109/-/DCSupplemental.
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