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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Jun 2;68(Pt 7):m867. doi: 10.1107/S1600536812024105

Diaqua­bis­[N-(pyridin-4-yl)isonicotin­amide-κN]bis­(thio­cyanato-κN)cobalt(II)

Jacob W Uebler a, Robert L LaDuca a,*
PMCID: PMC3393148  PMID: 22807716

Abstract

In the title compound, [Co(NCS)2(C11H9N3O)2(H2O)2], the octa­hedrally coordinated CoII ion lies on a crystallographic inversion center and is bound by two isothio­cyanate ligands, two aqua ligands and two N-(pyridin-4-yl)isonicotinamide (4-pina) ligands. The dihedral angle between the aromatic rings in the 4-pina ligand is 8.98 (11)°. In the crystal, the individual mol­ecular units are aggregated in three dimensions by O—H⋯N, O—H⋯S and N—H⋯S hydrogen-bonding pathways.

Related literature  

For other cobalt isothio­cyanate coordination polymers containing dipyridyl ligands, see: Johnston et al. (2007); Martin et al. (2009). For other coordination polymers containing the 4-pina ligand, see: Uemura et al. (2008). For the synthesis of the 4-pina ligand, see: Gardner et al. (1954).graphic file with name e-68-0m867-scheme1.jpg

Experimental  

Crystal data  

  • [Co(NCS)2(C11H9N3O)2(H2O)2]

  • M r = 609.55

  • Triclinic, Inline graphic

  • a = 7.0651 (4) Å

  • b = 9.3943 (5) Å

  • c = 10.5943 (6) Å

  • α = 81.433 (1)°

  • β = 76.343 (1)°

  • γ = 71.697 (1)°

  • V = 646.58 (6) Å3

  • Z = 1

  • Mo Kα radiation

  • μ = 0.87 mm−1

  • T = 173 K

  • 0.30 × 0.19 × 0.16 mm

Data collection  

  • Bruker APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.778, T max = 0.873

  • 10537 measured reflections

  • 2348 independent reflections

  • 2224 reflections with I > 2σ(I)

  • R int = 0.021

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.031

  • wR(F 2) = 0.079

  • S = 1.06

  • 2348 reflections

  • 187 parameters

  • 4 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 1.07 e Å−3

  • Δρmin = −0.33 e Å−3

Data collection: APEX2 (Bruker, 2006); cell refinement: SAINT (Bruker, 2006); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812024105/hb6817sup1.cif

e-68-0m867-sup1.cif (23.2KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812024105/hb6817Isup2.hkl

e-68-0m867-Isup2.hkl (115.4KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Selected bond lengths (Å).

Co1—O1 2.0964 (15)
Co1—N4 2.0994 (18)
Co1—N1 2.1410 (16)

Table 2. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O1—H1A⋯S1i 0.83 (2) 2.52 (2) 3.3129 (16) 162 (2)
O1—H1B⋯N3ii 0.84 (2) 1.95 (2) 2.755 (2) 162 (2)
N2—H2N⋯S1iii 0.93 (2) 2.68 (2) 3.540 (2) 155 (2)

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

We gratefully acknowledge the donors of the American Chemical Society Petroleum Research Fund for funding this work.

supplementary crystallographic information

Comment

In an attempt to prepare cobalt isothiocyanato coordination polymers containing 4-pyridylisonicotinamide (4-pina), the title compound, [Co(H2O)2(NCS)2(C11H9N3O)2], was isolated.

The asymmetric unit of the title compound contains a CoII ion on a crystallographic inversion center, one aqua ligand, one N-bound isothiocyanato ligand, and one 4-pina ligand bound via the pyridyl ring closest to the amide N atom. Operation of the inversion center produces a complete [Co(H2O)2(NCS)2(4-pina)2] molecular complex (Fig. 1). The CoII ion is octahedrally coordinated with trans aqua ligands, trans isothiocyanato ligands and trans 4-pina ligands. One of the pyridyl termini of the 4-pina ligand remains unligated and unprotonated.

Individual [Co(H2O)2(NCS)2(4-pina)2] complexes are connected into supramolecular chain motifs oriented along the [1 1 0] crystal direction (Fig. 2) via O—H···N hydrogen bonding between aqua ligands and unligated pyridyl N atoms. In turn these supramolecular chains aggregate into layer motifs (Fig. 3) by means of O—H···S hydrogen bonding between aqua ligands and terminal S atoms of the isothiocyanato ligands. These layers are coincident with the crystallographic (0 1 1) planes. These planes further aggregate into the three-dimensional crystal structure of the title compound (Fig. 4) through N—H···S hydrogen bonding between amide N—H groups of the 4-pina ligands and terminal S atoms of the isothiocyanato ligands.

Experimental

Cobalt(II) thiocyanate was obtained commercially. 4-Pyridylisonicotinamide was prepared by a published procedure (Gardner et al., 1954). Cobalt(II) thiocyanate (23 mg, 0.13 mmol) was dissolved in 3 ml water in a 15 ml glass vial. Onto this solution was layered 2 ml of a 1:1 water:ethanol solution, followed by a solution of 4-pina (19 mg, 0.10 mmol) dissolved in 3 ml 95% ethanol. Pink blocks of the title compound (16 mg, 0.026 mmol, 55% yield based on 4-pina) were obtained after 14 d at 298 K, and were isolated after washing with distilled water and acetone, and drying in air.

Refinement

All H atoms bound to C atoms were placed in calculated positions, with C—H = 0.95 Å, and refined in riding mode with Uiso = 1.2Ueq(C). The H atoms bound to the aqua ligand O atom were found in a difference Fourier map, restrained with with O—H = 0.85 Å and refined with Uiso = 1.2Ueq(O). The H atom bound to the 4-pina ligand N atom was found in a difference Fourier map, restrained with with N—H = 0.90 Å and refined with Uiso = 1.2Ueq(N).

Figures

Fig. 1.

Fig. 1.

The coordination environment of the title compound, showing 50% probability ellipsoids and partial atom numbering scheme. Unlabelled atoms are generated by (1–x, –y, 1–z). Hydrogen atom positions are shown as grey sticks. Color codes: dark blue Co, red O, black C, light blue N, yellow S.

Fig. 2.

Fig. 2.

A supramolecular chain of [Co(H2O)2(NCS)2(4-pina)2] molecules formed by O—H···N hydrogen bonding, which is indicated as dashed lines.

Fig. 3.

Fig. 3.

A supramolecular layer of chains of [Co(H2O)2(NCS)2(4-pina)2] molecules formed by O—H···S hydrogen bonding, which is indicated as dashed lines.

Fig. 4.

Fig. 4.

Stacking diagram of the title compound. Supramolecular layers are aggregated by by N—H···S hydrogen bonding, which is indicated as dashed lines.

Crystal data

[Co(NCS)2(C11H9N3O)2(H2O)2] Z = 1
Mr = 609.55 F(000) = 313
Triclinic, P1 Dx = 1.565 Mg m3
a = 7.0651 (4) Å Mo Kα radiation, λ = 0.71073 Å
b = 9.3943 (5) Å Cell parameters from 7965 reflections
c = 10.5943 (6) Å θ = 2.3–25.3°
α = 81.433 (1)° µ = 0.87 mm1
β = 76.343 (1)° T = 173 K
γ = 71.697 (1)° Prism, pink
V = 646.58 (6) Å3 0.30 × 0.19 × 0.16 mm

Data collection

Bruker APEXII CCD diffractometer 2348 independent reflections
Radiation source: fine-focus sealed tube 2224 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.021
φ and ω scans θmax = 25.3°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) h = −8→8
Tmin = 0.778, Tmax = 0.873 k = −11→11
10537 measured reflections l = −12→12

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.079 H atoms treated by a mixture of independent and constrained refinement
S = 1.06 w = 1/[σ2(Fo2) + (0.0374P)2 + 0.6702P] where P = (Fo2 + 2Fc2)/3
2348 reflections (Δ/σ)max < 0.001
187 parameters Δρmax = 1.07 e Å3
4 restraints Δρmin = −0.33 e Å3

Special details

Experimental. REM Highest difference peak 1.065, 1.00 Å from N2
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Co1 0.5000 1.0000 0.5000 0.01560 (12)
S1 0.01686 (8) 0.77868 (6) 0.79444 (5) 0.02645 (15)
O1 0.7779 (2) 0.86741 (18) 0.54694 (15) 0.0256 (3)
H1A 0.815 (4) 0.861 (3) 0.6164 (18) 0.031*
H1B 0.879 (3) 0.847 (3) 0.4857 (19) 0.031*
O2 0.5678 (2) 0.71752 (16) −0.10588 (14) 0.0266 (3)
N1 0.5585 (3) 0.86061 (19) 0.34441 (16) 0.0198 (4)
N2 0.7178 (3) 0.5618 (2) 0.05144 (18) 0.0283 (4)
H2N 0.790 (4) 0.462 (2) 0.066 (2) 0.034*
N3 0.9194 (3) 0.2524 (2) −0.34165 (17) 0.0246 (4)
N4 0.3440 (3) 0.8620 (2) 0.62833 (17) 0.0247 (4)
C1 0.5605 (3) 0.9145 (2) 0.2200 (2) 0.0246 (5)
H1 0.5281 1.0203 0.2002 0.030*
C2 0.6077 (4) 0.8233 (3) 0.1186 (2) 0.0301 (5)
H2 0.6058 0.8663 0.0317 0.036*
C3 0.6578 (3) 0.6679 (3) 0.1461 (2) 0.0263 (5)
C4 0.6567 (3) 0.6116 (3) 0.2740 (2) 0.0280 (5)
H4 0.6907 0.5062 0.2965 0.034*
C5 0.6054 (3) 0.7106 (2) 0.3685 (2) 0.0248 (5)
H5 0.6031 0.6702 0.4564 0.030*
C6 0.8466 (3) 0.3991 (3) −0.3756 (2) 0.0273 (5)
H6 0.8510 0.4297 −0.4656 0.033*
C7 0.7661 (3) 0.5084 (3) −0.2891 (2) 0.0273 (5)
H7 0.7144 0.6110 −0.3187 0.033*
C8 0.7621 (3) 0.4658 (2) −0.1579 (2) 0.0243 (5)
C9 0.8341 (3) 0.3146 (3) −0.1199 (2) 0.0270 (5)
H9 0.8317 0.2813 −0.0305 0.032*
C10 0.9102 (3) 0.2119 (2) −0.2148 (2) 0.0261 (5)
H10 0.9578 0.1081 −0.1879 0.031*
C11 0.6720 (3) 0.5941 (3) −0.0696 (2) 0.0274 (5)
C12 0.2111 (3) 0.8259 (2) 0.69719 (19) 0.0200 (4)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Co1 0.0173 (2) 0.0152 (2) 0.0135 (2) −0.00330 (15) −0.00210 (14) −0.00348 (14)
S1 0.0252 (3) 0.0293 (3) 0.0243 (3) −0.0109 (2) −0.0049 (2) 0.0058 (2)
O1 0.0213 (8) 0.0345 (9) 0.0165 (7) 0.0012 (7) −0.0044 (6) −0.0072 (6)
O2 0.0319 (8) 0.0210 (8) 0.0237 (8) 0.0009 (6) −0.0110 (6) −0.0021 (6)
N1 0.0195 (8) 0.0203 (8) 0.0191 (8) −0.0032 (7) −0.0039 (7) −0.0055 (7)
N2 0.0317 (10) 0.0254 (10) 0.0266 (10) −0.0055 (8) −0.0058 (8) −0.0045 (8)
N3 0.0220 (9) 0.0267 (9) 0.0241 (9) −0.0042 (7) −0.0014 (7) −0.0105 (7)
N4 0.0288 (10) 0.0241 (9) 0.0212 (9) −0.0094 (8) −0.0028 (8) −0.0019 (7)
C1 0.0270 (11) 0.0245 (11) 0.0223 (11) −0.0054 (9) −0.0064 (9) −0.0043 (8)
C2 0.0321 (12) 0.0437 (14) 0.0167 (10) −0.0123 (10) −0.0050 (9) −0.0057 (9)
C3 0.0195 (10) 0.0301 (12) 0.0317 (12) −0.0087 (9) 0.0005 (9) −0.0160 (9)
C4 0.0282 (11) 0.0225 (11) 0.0324 (12) −0.0051 (9) −0.0029 (9) −0.0097 (9)
C5 0.0271 (11) 0.0224 (11) 0.0245 (11) −0.0051 (9) −0.0053 (9) −0.0057 (9)
C6 0.0287 (12) 0.0295 (12) 0.0220 (11) −0.0059 (9) −0.0032 (9) −0.0058 (9)
C7 0.0270 (11) 0.0232 (11) 0.0308 (12) −0.0064 (9) −0.0030 (9) −0.0058 (9)
C8 0.0173 (10) 0.0274 (11) 0.0306 (11) −0.0098 (9) 0.0010 (8) −0.0122 (9)
C9 0.0264 (11) 0.0387 (13) 0.0179 (10) −0.0121 (10) −0.0025 (8) −0.0059 (9)
C10 0.0261 (11) 0.0228 (11) 0.0279 (11) −0.0039 (9) −0.0051 (9) −0.0048 (9)
C11 0.0247 (11) 0.0328 (13) 0.0265 (11) −0.0130 (10) −0.0024 (9) −0.0027 (9)
C12 0.0246 (11) 0.0158 (9) 0.0195 (10) −0.0030 (8) −0.0081 (9) −0.0016 (8)

Geometric parameters (Å, º)

Co1—O1 2.0964 (15) C1—C2 1.388 (3)
Co1—O1i 2.0964 (15) C1—H1 0.9500
Co1—N4i 2.0994 (18) C2—C3 1.392 (3)
Co1—N4 2.0994 (18) C2—H2 0.9500
Co1—N1i 2.1410 (16) C3—C4 1.379 (3)
Co1—N1 2.1410 (16) C4—C5 1.376 (3)
S1—C12 1.649 (2) C4—H4 0.9500
O1—H1A 0.825 (16) C5—H5 0.9500
O1—H1B 0.836 (16) C6—C7 1.373 (3)
O2—C11 1.225 (3) C6—H6 0.9500
N1—C1 1.338 (3) C7—C8 1.384 (3)
N1—C5 1.342 (3) C7—H7 0.9500
N2—C11 1.364 (3) C8—C9 1.383 (3)
N2—C3 1.418 (3) C8—C11 1.518 (3)
N2—H2N 0.927 (17) C9—C10 1.392 (3)
N3—C10 1.332 (3) C9—H9 0.9500
N3—C6 1.337 (3) C10—H10 0.9500
N4—C12 1.154 (3)
O1—Co1—O1i 180.0 C1—C2—H2 120.5
O1—Co1—N4i 88.84 (7) C3—C2—H2 120.5
O1i—Co1—N4i 91.16 (7) C4—C3—C2 118.11 (19)
O1—Co1—N4 91.16 (7) C4—C3—N2 117.0 (2)
O1i—Co1—N4 88.84 (7) C2—C3—N2 124.9 (2)
N4i—Co1—N4 180.0 C5—C4—C3 118.9 (2)
O1—Co1—N1i 91.88 (6) C5—C4—H4 120.6
O1i—Co1—N1i 88.12 (6) C3—C4—H4 120.6
N4i—Co1—N1i 91.27 (7) N1—C5—C4 124.2 (2)
N4—Co1—N1i 88.73 (7) N1—C5—H5 117.9
O1—Co1—N1 88.12 (6) C4—C5—H5 117.9
O1i—Co1—N1 91.88 (6) N3—C6—C7 124.4 (2)
N4i—Co1—N1 88.73 (7) N3—C6—H6 117.8
N4—Co1—N1 91.27 (7) C7—C6—H6 117.8
N1i—Co1—N1 180.0 C6—C7—C8 118.5 (2)
Co1—O1—H1A 127.1 (18) C6—C7—H7 120.8
Co1—O1—H1B 117.5 (17) C8—C7—H7 120.8
H1A—O1—H1B 110 (2) C9—C8—C7 118.34 (19)
C1—N1—C5 116.63 (18) C9—C8—C11 126.7 (2)
C1—N1—Co1 123.33 (14) C7—C8—C11 114.90 (19)
C5—N1—Co1 119.97 (14) C8—C9—C10 118.9 (2)
C11—N2—C3 124.0 (2) C8—C9—H9 120.6
C11—N2—H2N 112.7 (16) C10—C9—H9 120.6
C3—N2—H2N 123.3 (16) N3—C10—C9 123.2 (2)
C10—N3—C6 116.73 (18) N3—C10—H10 118.4
C12—N4—Co1 159.23 (17) C9—C10—H10 118.4
N1—C1—C2 123.2 (2) O2—C11—N2 123.0 (2)
N1—C1—H1 118.4 O2—C11—C8 121.9 (2)
C2—C1—H1 118.4 N2—C11—C8 115.1 (2)
C1—C2—C3 119.0 (2) N4—C12—S1 178.42 (19)
O1—Co1—N1—C1 −124.58 (17) C11—N2—C3—C2 −22.5 (3)
O1i—Co1—N1—C1 55.42 (17) C2—C3—C4—C5 0.3 (3)
N4i—Co1—N1—C1 −35.70 (17) N2—C3—C4—C5 178.0 (2)
N4—Co1—N1—C1 144.30 (17) C1—N1—C5—C4 0.8 (3)
N1i—Co1—N1—C1 27 (35) Co1—N1—C5—C4 −176.15 (17)
O1—Co1—N1—C5 52.17 (16) C3—C4—C5—N1 −1.0 (3)
O1i—Co1—N1—C5 −127.83 (16) C10—N3—C6—C7 0.5 (3)
N4i—Co1—N1—C5 141.05 (16) N3—C6—C7—C8 1.1 (3)
N4—Co1—N1—C5 −38.95 (16) C6—C7—C8—C9 −1.8 (3)
N1i—Co1—N1—C5 −156 (35) C6—C7—C8—C11 179.56 (19)
O1—Co1—N4—C12 156.5 (5) C7—C8—C9—C10 0.9 (3)
O1i—Co1—N4—C12 −23.5 (5) C11—C8—C9—C10 179.4 (2)
N4i—Co1—N4—C12 −129 (100) C6—N3—C10—C9 −1.5 (3)
N1i—Co1—N4—C12 64.7 (5) C8—C9—C10—N3 0.8 (3)
N1—Co1—N4—C12 −115.3 (5) C3—N2—C11—O2 −2.7 (3)
C5—N1—C1—C2 0.1 (3) C3—N2—C11—C8 176.58 (19)
Co1—N1—C1—C2 176.94 (16) C9—C8—C11—O2 −161.6 (2)
N1—C1—C2—C3 −0.7 (3) C7—C8—C11—O2 16.8 (3)
C1—C2—C3—C4 0.5 (3) C9—C8—C11—N2 19.1 (3)
C1—C2—C3—N2 −177.0 (2) C7—C8—C11—N2 −162.41 (19)
C11—N2—C3—C4 159.9 (2) Co1—N4—C12—S1 7 (8)

Symmetry code: (i) −x+1, −y+2, −z+1.

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
O1—H1A···S1ii 0.83 (2) 2.52 (2) 3.3129 (16) 162 (2)
O1—H1B···N3iii 0.84 (2) 1.95 (2) 2.755 (2) 162 (2)
N2—H2N···S1iv 0.93 (2) 2.68 (2) 3.540 (2) 155 (2)

Symmetry codes: (ii) x+1, y, z; (iii) −x+2, −y+1, −z; (iv) −x+1, −y+1, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HB6817).

References

  1. Bruker (2006). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Gardner, T. S., Wenis, E. & Lee, J. (1954). J. Org. Chem., 19, 753–757.
  3. Johnston, L. L., Ursini, A. J., Oien, N. P., Supkowski, R. M. & LaDuca, R. L. (2007). Inorg. Chim. Acta, 360, 3619–3625.
  4. Martin, D. P., Knapp, W. R., Supkowski, R. M. & LaDuca, R. L. (2009). Inorg. Chim. Acta, 362, 1559–1564.
  5. Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
  6. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  7. Uemura, K., Kumamoto, Y. & Kitagawa, S. (2008). Chem. Eur. J. 14, 9565–9576. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812024105/hb6817sup1.cif

e-68-0m867-sup1.cif (23.2KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812024105/hb6817Isup2.hkl

e-68-0m867-Isup2.hkl (115.4KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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