Abstract
In the title molecule, C17H12N2O3, the naphthalene ring system and the pyridin-3-yl rings are nearly coplanar with a dihedral angle between them of 2.28 (8)°. In the crystal, the hydroxy and amide N atoms participate in hydrogen bonds, which connect the molecules into a two-dimensional network parallel to (101).
Related literature
For coordination polymers based on linking ligands with O- and N-donors see: Robin & Fromm, 2006 ▶. For d–f coordination polymers based on linking ligands with pyridyl–carboxylate terminals see: Hu et al. (2012 ▶); Chen et al. (2010 ▶); Tang et al. (2010 ▶); Yue et al. (2011 ▶); Zhu et al. (2010 ▶). For related potential linking ligands see: Han & Lee, 2012 ▶; Zheng & Lee, 2012 ▶.
Experimental
Crystal data
C17H12N2O3
M r = 292.29
Monoclinic,
a = 25.901 (3) Å
b = 6.2097 (7) Å
c = 8.6080 (9) Å
β = 103.258 (9)°
V = 1347.6 (3) Å3
Z = 4
Mo Kα radiation
μ = 0.10 mm−1
T = 296 K
0.40 × 0.20 × 0.08 mm
Data collection
Bruker APEXII CCD diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.961, T max = 0.992
11725 measured reflections
1693 independent reflections
2845 reflections with I > 2σ(I)
R int = 0.035
Refinement
R[F 2 > 2σ(F 2)] = 0.034
wR(F 2) = 0.092
S = 1.05
1693 reflections
207 parameters
2 restraints
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.24 e Å−3
Δρmin = −0.18 e Å−3
Data collection: APEX2 (Bruker (2008 ▶); cell refinement: SAINT (Bruker (2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812024051/mw2071sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812024051/mw2071Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812024051/mw2071Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N2—H2N⋯O1i | 0.92 (3) | 2.01 (3) | 2.926 (2) | 170 (2) |
| O2—H2O⋯N1ii | 0.84 (3) | 1.88 (4) | 2.708 (2) | 170 (3) |
Symmetry codes: (i)
; (ii)
.
Acknowledgments
This work was supported by the Mid-career Researcher Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Education, Science, and Technology (No. 2009–0079916).
supplementary crystallographic information
Comment
Bis(pyridyl)- and dicarboxylate-type linking ligands have been typically employed for the preparation of coordination polymers (Robin & Fromm, 2006). The vast majority of known coordination polymers contain either a d- or an f-block metal. However, several research groups recently prepared polymers containing both d- and f-block metals within their frameworks by utilizing linking ligands possessing pyridyl–carboxylate terminal groups (Hu et al., 2012; Chen et al., 2010; Tang et al., 2010; Yue et al., 2011; Zhu et al., 2010). Consistent with the hard–soft acid–base concept, the harder oxygen atoms are bonded to the f-block metals and the softer nitrogen atoms are bonded to the d-block metals in these polymers. Our research group recently reported the structures of two potential linking ligands with pyridyl–carboxylate terminal groups (Han & Lee, 2012; Zheng & Lee, 2012) and here we report the structure of third.
The molecular structure of the title molecule with the atom-labeling scheme is given in Figure 1. The naphthalene and 3-pyridyl rings are nearly coplanar with a dihedral angle between them of 2.28 (8)°. The N2–C6 bond length (1.343 (2) Å) indicates a C–N single bond. The intermolecular O–H···N and N–H···O (carbonyl) hydrogen bonds (Table 1) connect the molecules along the a- and c-axes, respectively, leading to a 2-D network in the [101] direction (Figure 2).
Experimental
A stirred mixture of 6-amino-2-naphthoic acid (0.94 g, 5 mmol) and N,N-dimethyl-4-aminopyridine (0.02 g, 0.17 mmol) in dimethylacetamide (15 mL) was heated at 80 °C for 30 min under argon. The solution was cooled to 10 °C, and nicotinoyl chloride hydrochloride (0.89 g, 5 mmol) was added. The temperature was then raised slowly to 50 °C and was maintained there for 8 h. On addition of dichloromethane to the resulting mixture, a precipitate was formed, which was filtered off and dried under vacuum at 100°C. The product was recrystallized from methanol to give crystals of the title compound (1.22 g, 4.2 mmol, 83.9% yield). mp: 593–595 K (decomp). 1H NMR (500 MHz, DMSO-d6, d) 11.06 (s, 1H, carboxylic acid OH), 9.35 (s, 1H, amide NH), 8.93 (d, 1H, pyridine proton), 8.71 (d, 1H, pyridine proton), 8.56 (s, 2H, naphthalene proton), 8.14 (d, 1H, pyridine proton), 7.96–7.94 (m, 4H, naphthalene proton), 7.88 (t, 1H, pyridine proton). 13C{1H} NMR (125 MHz, DMSO-d6, d) 167.3, 163.1, 148.7, 145.7, 139.5, 138.4, 135.4, 131.6, 130.2, 129.9, 129.1, 127.8, 127.0, 125.75, 125.0, 121.3, 116.2. IR (KBr, cm-1): 3623 (w), 3328 (w), 2925 (s), 2640 (s), 2372 (s), 2075 (s), 1800 (m), 1621 (m), 1551 (m), 1291 (m), 1195 (m), 1018 (m), 773 (m), 724 (m), 678 (m), 633 (m), 494 (s).
Refinement
All non-hydrogen atoms were refined anisotropically. C-bound H atoms were positioned geometrically [C–H = 0.93–0.97 A] and allowed to ride on their parent atoms, with Uiso(H) = 1.2Ueq(C). The hydrogen atoms attached to N and O were located in a difference Fourier map and refined isotropically.
Figures
Fig. 1.
The molecular structure of the title compound showing the atomic numbering and 50% probability displacement ellipsoids.
Fig. 2.
A portion of the crystal packing showing a 2-D H-bonded (dashed lines) network.
Crystal data
| C17H12N2O3 | F(000) = 608 |
| Mr = 292.29 | Dx = 1.441 Mg m−3 |
| Monoclinic, Cc | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: C -2yc | Cell parameters from 6523 reflections |
| a = 25.901 (3) Å | θ = 3.2–28.5° |
| b = 6.2097 (7) Å | µ = 0.10 mm−1 |
| c = 8.6080 (9) Å | T = 296 K |
| β = 103.258 (9)° | Plate, yellow |
| V = 1347.6 (3) Å3 | 0.40 × 0.20 × 0.08 mm |
| Z = 4 |
Data collection
| Bruker APEXII CCD diffractometer | 1693 independent reflections |
| Radiation source: sealed tube | 2845 reflections with I > 2σ(I) |
| Graphite monochromator | Rint = 0.035 |
| φ and ω scans | θmax = 28.5°, θmin = 1.6° |
| Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −34→34 |
| Tmin = 0.961, Tmax = 0.992 | k = −8→8 |
| 11725 measured reflections | l = −11→11 |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.034 | H atoms treated by a mixture of independent and constrained refinement |
| wR(F2) = 0.092 | w = 1/[σ2(Fo2) + (0.0641P)2 + 0.0998P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.05 | (Δ/σ)max < 0.001 |
| 1693 reflections | Δρmax = 0.24 e Å−3 |
| 207 parameters | Δρmin = −0.18 e Å−3 |
| 2 restraints | Absolute structure: The absolute structure could not be determined with certainty |
| Primary atom site location: structure-invariant direct methods |
Special details
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| O1 | 0.31793 (6) | −0.2140 (2) | 0.26571 (17) | 0.0391 (3) | |
| O2 | 0.62483 (6) | 0.3924 (3) | 0.1855 (2) | 0.0454 (4) | |
| H2O | 0.6456 (12) | 0.485 (6) | 0.163 (4) | 0.059 (8)* | |
| O3 | 0.59863 (7) | 0.6936 (3) | 0.2841 (3) | 0.0583 (5) | |
| N1 | 0.19038 (7) | −0.1634 (3) | 0.5762 (2) | 0.0406 (4) | |
| N2 | 0.33612 (6) | 0.0227 (3) | 0.47225 (19) | 0.0354 (4) | |
| H2N | 0.3278 (9) | 0.070 (4) | 0.565 (3) | 0.037 (6)* | |
| C1 | 0.23346 (8) | −0.0931 (3) | 0.5307 (2) | 0.0359 (4) | |
| H1 | 0.2453 | 0.0463 | 0.5580 | 0.043* | |
| C2 | 0.17334 (8) | −0.3618 (4) | 0.5349 (3) | 0.0432 (5) | |
| H2 | 0.1435 | −0.4116 | 0.5666 | 0.052* | |
| C3 | 0.19787 (9) | −0.4971 (4) | 0.4473 (3) | 0.0430 (5) | |
| H3 | 0.1846 | −0.6346 | 0.4200 | 0.052* | |
| C4 | 0.24257 (8) | −0.4253 (4) | 0.4005 (2) | 0.0386 (4) | |
| H4 | 0.2598 | −0.5133 | 0.3409 | 0.046* | |
| C5 | 0.26131 (7) | −0.2192 (3) | 0.4442 (2) | 0.0301 (4) | |
| C6 | 0.30789 (7) | −0.1368 (3) | 0.3864 (2) | 0.0301 (4) | |
| C7 | 0.38118 (7) | 0.1288 (3) | 0.4401 (2) | 0.0307 (4) | |
| C8 | 0.39174 (8) | 0.3389 (3) | 0.5049 (2) | 0.0340 (4) | |
| H8 | 0.3691 | 0.4013 | 0.5616 | 0.041* | |
| C9 | 0.43521 (7) | 0.4492 (3) | 0.4839 (2) | 0.0320 (4) | |
| H9 | 0.4420 | 0.5865 | 0.5270 | 0.038* | |
| C10 | 0.47019 (7) | 0.3577 (3) | 0.3975 (2) | 0.0283 (4) | |
| C11 | 0.51502 (7) | 0.4691 (3) | 0.3710 (2) | 0.0308 (4) | |
| H11 | 0.5221 | 0.6080 | 0.4106 | 0.037* | |
| C12 | 0.54815 (7) | 0.3749 (3) | 0.2878 (2) | 0.0311 (4) | |
| C13 | 0.53849 (8) | 0.1624 (3) | 0.2294 (2) | 0.0350 (4) | |
| H13 | 0.5618 | 0.0978 | 0.1757 | 0.042* | |
| C14 | 0.49520 (7) | 0.0515 (3) | 0.2513 (2) | 0.0338 (4) | |
| H14 | 0.4890 | −0.0876 | 0.2113 | 0.041* | |
| C15 | 0.45962 (7) | 0.1469 (3) | 0.3345 (2) | 0.0285 (4) | |
| C16 | 0.41444 (7) | 0.0333 (3) | 0.3574 (2) | 0.0317 (4) | |
| H16 | 0.4074 | −0.1050 | 0.3166 | 0.038* | |
| C17 | 0.59290 (7) | 0.5052 (4) | 0.2540 (2) | 0.0356 (4) |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O1 | 0.0371 (7) | 0.0478 (8) | 0.0382 (6) | −0.0070 (6) | 0.0207 (5) | −0.0074 (6) |
| O2 | 0.0352 (8) | 0.0457 (9) | 0.0632 (9) | −0.0036 (7) | 0.0274 (7) | 0.0042 (7) |
| O3 | 0.0498 (10) | 0.0452 (10) | 0.0917 (13) | −0.0172 (8) | 0.0405 (9) | −0.0099 (8) |
| N1 | 0.0283 (8) | 0.0505 (10) | 0.0483 (9) | −0.0018 (7) | 0.0197 (7) | −0.0032 (8) |
| N2 | 0.0312 (8) | 0.0458 (10) | 0.0353 (8) | −0.0097 (7) | 0.0200 (6) | −0.0055 (7) |
| C1 | 0.0283 (9) | 0.0382 (10) | 0.0452 (10) | −0.0026 (8) | 0.0166 (8) | −0.0032 (8) |
| C2 | 0.0282 (9) | 0.0566 (14) | 0.0485 (11) | −0.0062 (9) | 0.0166 (8) | 0.0062 (10) |
| C3 | 0.0375 (11) | 0.0382 (11) | 0.0551 (12) | −0.0114 (8) | 0.0142 (9) | −0.0017 (9) |
| C4 | 0.0340 (10) | 0.0398 (11) | 0.0450 (10) | −0.0033 (7) | 0.0156 (8) | −0.0053 (8) |
| C5 | 0.0232 (8) | 0.0363 (10) | 0.0334 (8) | −0.0031 (7) | 0.0120 (6) | 0.0016 (7) |
| C6 | 0.0252 (8) | 0.0366 (9) | 0.0318 (8) | −0.0011 (7) | 0.0132 (6) | 0.0023 (7) |
| C7 | 0.0255 (9) | 0.0385 (11) | 0.0308 (8) | −0.0060 (7) | 0.0123 (6) | 0.0013 (7) |
| C8 | 0.0332 (9) | 0.0383 (10) | 0.0348 (9) | −0.0001 (8) | 0.0169 (7) | −0.0021 (7) |
| C9 | 0.0334 (10) | 0.0317 (9) | 0.0343 (8) | −0.0025 (7) | 0.0149 (7) | −0.0030 (7) |
| C10 | 0.0267 (8) | 0.0318 (9) | 0.0285 (7) | −0.0003 (7) | 0.0109 (6) | 0.0021 (6) |
| C11 | 0.0281 (9) | 0.0324 (9) | 0.0337 (8) | −0.0057 (7) | 0.0109 (7) | 0.0004 (7) |
| C12 | 0.0244 (8) | 0.0351 (10) | 0.0357 (9) | −0.0022 (7) | 0.0110 (7) | 0.0052 (7) |
| C13 | 0.0295 (9) | 0.0368 (10) | 0.0429 (10) | 0.0014 (7) | 0.0171 (8) | 0.0008 (8) |
| C14 | 0.0318 (10) | 0.0324 (9) | 0.0414 (10) | 0.0003 (7) | 0.0171 (8) | −0.0022 (7) |
| C15 | 0.0266 (9) | 0.0331 (9) | 0.0289 (7) | −0.0031 (7) | 0.0124 (6) | 0.0009 (6) |
| C16 | 0.0296 (9) | 0.0336 (9) | 0.0346 (9) | −0.0057 (7) | 0.0130 (7) | −0.0013 (7) |
| C17 | 0.0256 (9) | 0.0445 (12) | 0.0392 (9) | −0.0064 (8) | 0.0126 (7) | 0.0031 (8) |
Geometric parameters (Å, º)
| O1—C6 | 1.225 (2) | C7—C16 | 1.372 (3) |
| O2—C17 | 1.321 (2) | C7—C8 | 1.421 (3) |
| O2—H2O | 0.84 (3) | C8—C9 | 1.365 (3) |
| O3—C17 | 1.200 (3) | C8—H8 | 0.9300 |
| N1—C2 | 1.330 (3) | C9—C10 | 1.416 (2) |
| N1—C1 | 1.338 (2) | C9—H9 | 0.9300 |
| N2—C6 | 1.347 (3) | C10—C11 | 1.414 (2) |
| N2—C7 | 1.422 (2) | C10—C15 | 1.420 (2) |
| N2—H2N | 0.92 (3) | C11—C12 | 1.369 (3) |
| C1—C5 | 1.391 (2) | C11—H11 | 0.9300 |
| C1—H1 | 0.9300 | C12—C13 | 1.413 (3) |
| C2—C3 | 1.378 (3) | C12—C17 | 1.496 (2) |
| C2—H2 | 0.9300 | C13—C14 | 1.365 (3) |
| C3—C4 | 1.384 (3) | C13—H13 | 0.9300 |
| C3—H3 | 0.9300 | C14—C15 | 1.420 (2) |
| C4—C5 | 1.389 (3) | C14—H14 | 0.9300 |
| C4—H4 | 0.9300 | C15—C16 | 1.418 (2) |
| C5—C6 | 1.497 (2) | C16—H16 | 0.9300 |
| C17—O2—H2O | 104 (2) | C7—C8—H8 | 120.0 |
| C2—N1—C1 | 118.18 (17) | C8—C9—C10 | 120.97 (17) |
| C6—N2—C7 | 126.92 (15) | C8—C9—H9 | 119.5 |
| C6—N2—H2N | 120.2 (15) | C10—C9—H9 | 119.5 |
| C7—N2—H2N | 112.9 (15) | C11—C10—C9 | 122.43 (17) |
| N1—C1—C5 | 122.86 (18) | C11—C10—C15 | 118.87 (15) |
| N1—C1—H1 | 118.6 | C9—C10—C15 | 118.69 (15) |
| C5—C1—H1 | 118.6 | C12—C11—C10 | 120.79 (18) |
| N1—C2—C3 | 123.04 (18) | C12—C11—H11 | 119.6 |
| N1—C2—H2 | 118.5 | C10—C11—H11 | 119.6 |
| C3—C2—H2 | 118.5 | C11—C12—C13 | 120.25 (17) |
| C2—C3—C4 | 119.0 (2) | C11—C12—C17 | 118.50 (18) |
| C2—C3—H3 | 120.5 | C13—C12—C17 | 121.19 (17) |
| C4—C3—H3 | 120.5 | C14—C13—C12 | 120.39 (17) |
| C3—C4—C5 | 118.79 (18) | C14—C13—H13 | 119.8 |
| C3—C4—H4 | 120.6 | C12—C13—H13 | 119.8 |
| C5—C4—H4 | 120.6 | C13—C14—C15 | 120.52 (17) |
| C4—C5—C1 | 118.16 (16) | C13—C14—H14 | 119.7 |
| C4—C5—C6 | 118.87 (16) | C15—C14—H14 | 119.7 |
| C1—C5—C6 | 122.81 (16) | C16—C15—C10 | 119.90 (15) |
| O1—C6—N2 | 123.99 (16) | C16—C15—C14 | 120.97 (17) |
| O1—C6—C5 | 119.50 (17) | C10—C15—C14 | 119.13 (15) |
| N2—C6—C5 | 116.51 (15) | C7—C16—C15 | 119.58 (18) |
| C16—C7—C8 | 120.89 (16) | C7—C16—H16 | 120.2 |
| C16—C7—N2 | 122.82 (17) | C15—C16—H16 | 120.2 |
| C8—C7—N2 | 116.24 (16) | O3—C17—O2 | 123.64 (17) |
| C9—C8—C7 | 119.96 (16) | O3—C17—C12 | 123.26 (18) |
| C9—C8—H8 | 120.0 | O2—C17—C12 | 113.08 (18) |
| C2—N1—C1—C5 | −0.8 (3) | C9—C10—C11—C12 | 179.58 (16) |
| C1—N1—C2—C3 | −0.2 (3) | C15—C10—C11—C12 | −0.8 (3) |
| N1—C2—C3—C4 | 0.5 (3) | C10—C11—C12—C13 | −1.2 (3) |
| C2—C3—C4—C5 | 0.3 (3) | C10—C11—C12—C17 | 176.03 (16) |
| C3—C4—C5—C1 | −1.2 (3) | C11—C12—C13—C14 | 2.0 (3) |
| C3—C4—C5—C6 | −176.77 (19) | C17—C12—C13—C14 | −175.16 (19) |
| N1—C1—C5—C4 | 1.6 (3) | C12—C13—C14—C15 | −0.7 (3) |
| N1—C1—C5—C6 | 176.89 (18) | C11—C10—C15—C16 | −179.01 (19) |
| C7—N2—C6—O1 | 0.2 (3) | C9—C10—C15—C16 | 0.6 (2) |
| C7—N2—C6—C5 | −178.98 (17) | C11—C10—C15—C14 | 2.0 (2) |
| C4—C5—C6—O1 | 23.5 (3) | C9—C10—C15—C14 | −178.39 (19) |
| C1—C5—C6—O1 | −151.76 (19) | C13—C14—C15—C16 | 179.77 (17) |
| C4—C5—C6—N2 | −157.19 (18) | C13—C14—C15—C10 | −1.2 (3) |
| C1—C5—C6—N2 | 27.5 (3) | C8—C7—C16—C15 | −0.8 (3) |
| C6—N2—C7—C16 | −26.4 (3) | N2—C7—C16—C15 | −177.94 (16) |
| C6—N2—C7—C8 | 156.33 (19) | C10—C15—C16—C7 | 0.2 (3) |
| C16—C7—C8—C9 | 0.6 (3) | C14—C15—C16—C7 | 179.18 (17) |
| N2—C7—C8—C9 | 177.93 (17) | C11—C12—C17—O3 | −6.6 (3) |
| C7—C8—C9—C10 | 0.2 (3) | C13—C12—C17—O3 | 170.6 (2) |
| C8—C9—C10—C11 | 178.80 (17) | C11—C12—C17—O2 | 174.43 (16) |
| C8—C9—C10—C15 | −0.8 (3) | C13—C12—C17—O2 | −8.4 (3) |
Hydrogen-bond geometry (Å, º)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N2—H2N···O1i | 0.92 (3) | 2.01 (3) | 2.926 (2) | 170 (2) |
| O2—H2O···N1ii | 0.84 (3) | 1.88 (4) | 2.708 (2) | 170 (3) |
Symmetry codes: (i) x, −y, z+1/2; (ii) x+1/2, −y+1/2, z−1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: MW2071).
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812024051/mw2071sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812024051/mw2071Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812024051/mw2071Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


