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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Jun 2;68(Pt 7):o1978. doi: 10.1107/S1600536812024051

6-Nicotinamido-2-naphthoic acid

Yun-Sung Song a, Soon W Lee a,*
PMCID: PMC3393255  PMID: 22807812

Abstract

In the title mol­ecule, C17H12N2O3, the naphthalene ring system and the pyridin-3-yl rings are nearly coplanar with a dihedral angle between them of 2.28 (8)°. In the crystal, the hy­droxy and amide N atoms participate in hydrogen bonds, which connect the mol­ecules into a two-dimensional network parallel to (101).

Related literature  

For coordination polymers based on linking ligands with O- and N-donors see: Robin & Fromm, 2006. For df coordination polymers based on linking ligands with pyrid­yl–carboxyl­ate terminals see: Hu et al. (2012); Chen et al. (2010); Tang et al. (2010); Yue et al. (2011); Zhu et al. (2010). For related potential linking ligands see: Han & Lee, 2012; Zheng & Lee, 2012.graphic file with name e-68-o1978-scheme1.jpg

Experimental  

Crystal data  

  • C17H12N2O3

  • M r = 292.29

  • Monoclinic, Inline graphic

  • a = 25.901 (3) Å

  • b = 6.2097 (7) Å

  • c = 8.6080 (9) Å

  • β = 103.258 (9)°

  • V = 1347.6 (3) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.10 mm−1

  • T = 296 K

  • 0.40 × 0.20 × 0.08 mm

Data collection  

  • Bruker APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.961, T max = 0.992

  • 11725 measured reflections

  • 1693 independent reflections

  • 2845 reflections with I > 2σ(I)

  • R int = 0.035

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.034

  • wR(F 2) = 0.092

  • S = 1.05

  • 1693 reflections

  • 207 parameters

  • 2 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.24 e Å−3

  • Δρmin = −0.18 e Å−3

Data collection: APEX2 (Bruker (2008); cell refinement: SAINT (Bruker (2008); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812024051/mw2071sup1.cif

e-68-o1978-sup1.cif (17.7KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812024051/mw2071Isup2.hkl

e-68-o1978-Isup2.hkl (83.4KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812024051/mw2071Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N2—H2N⋯O1i 0.92 (3) 2.01 (3) 2.926 (2) 170 (2)
O2—H2O⋯N1ii 0.84 (3) 1.88 (4) 2.708 (2) 170 (3)

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

This work was supported by the Mid-career Researcher Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Education, Science, and Technology (No. 2009–0079916).

supplementary crystallographic information

Comment

Bis(pyridyl)- and dicarboxylate-type linking ligands have been typically employed for the preparation of coordination polymers (Robin & Fromm, 2006). The vast majority of known coordination polymers contain either a d- or an f-block metal. However, several research groups recently prepared polymers containing both d- and f-block metals within their frameworks by utilizing linking ligands possessing pyridyl–carboxylate terminal groups (Hu et al., 2012; Chen et al., 2010; Tang et al., 2010; Yue et al., 2011; Zhu et al., 2010). Consistent with the hard–soft acid–base concept, the harder oxygen atoms are bonded to the f-block metals and the softer nitrogen atoms are bonded to the d-block metals in these polymers. Our research group recently reported the structures of two potential linking ligands with pyridyl–carboxylate terminal groups (Han & Lee, 2012; Zheng & Lee, 2012) and here we report the structure of third.

The molecular structure of the title molecule with the atom-labeling scheme is given in Figure 1. The naphthalene and 3-pyridyl rings are nearly coplanar with a dihedral angle between them of 2.28 (8)°. The N2–C6 bond length (1.343 (2) Å) indicates a C–N single bond. The intermolecular O–H···N and N–H···O (carbonyl) hydrogen bonds (Table 1) connect the molecules along the a- and c-axes, respectively, leading to a 2-D network in the [101] direction (Figure 2).

Experimental

A stirred mixture of 6-amino-2-naphthoic acid (0.94 g, 5 mmol) and N,N-dimethyl-4-aminopyridine (0.02 g, 0.17 mmol) in dimethylacetamide (15 mL) was heated at 80 °C for 30 min under argon. The solution was cooled to 10 °C, and nicotinoyl chloride hydrochloride (0.89 g, 5 mmol) was added. The temperature was then raised slowly to 50 °C and was maintained there for 8 h. On addition of dichloromethane to the resulting mixture, a precipitate was formed, which was filtered off and dried under vacuum at 100°C. The product was recrystallized from methanol to give crystals of the title compound (1.22 g, 4.2 mmol, 83.9% yield). mp: 593–595 K (decomp). 1H NMR (500 MHz, DMSO-d6, d) 11.06 (s, 1H, carboxylic acid OH), 9.35 (s, 1H, amide NH), 8.93 (d, 1H, pyridine proton), 8.71 (d, 1H, pyridine proton), 8.56 (s, 2H, naphthalene proton), 8.14 (d, 1H, pyridine proton), 7.96–7.94 (m, 4H, naphthalene proton), 7.88 (t, 1H, pyridine proton). 13C{1H} NMR (125 MHz, DMSO-d6, d) 167.3, 163.1, 148.7, 145.7, 139.5, 138.4, 135.4, 131.6, 130.2, 129.9, 129.1, 127.8, 127.0, 125.75, 125.0, 121.3, 116.2. IR (KBr, cm-1): 3623 (w), 3328 (w), 2925 (s), 2640 (s), 2372 (s), 2075 (s), 1800 (m), 1621 (m), 1551 (m), 1291 (m), 1195 (m), 1018 (m), 773 (m), 724 (m), 678 (m), 633 (m), 494 (s).

Refinement

All non-hydrogen atoms were refined anisotropically. C-bound H atoms were positioned geometrically [C–H = 0.93–0.97 A] and allowed to ride on their parent atoms, with Uiso(H) = 1.2Ueq(C). The hydrogen atoms attached to N and O were located in a difference Fourier map and refined isotropically.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound showing the atomic numbering and 50% probability displacement ellipsoids.

Fig. 2.

Fig. 2.

A portion of the crystal packing showing a 2-D H-bonded (dashed lines) network.

Crystal data

C17H12N2O3 F(000) = 608
Mr = 292.29 Dx = 1.441 Mg m3
Monoclinic, Cc Mo Kα radiation, λ = 0.71073 Å
Hall symbol: C -2yc Cell parameters from 6523 reflections
a = 25.901 (3) Å θ = 3.2–28.5°
b = 6.2097 (7) Å µ = 0.10 mm1
c = 8.6080 (9) Å T = 296 K
β = 103.258 (9)° Plate, yellow
V = 1347.6 (3) Å3 0.40 × 0.20 × 0.08 mm
Z = 4

Data collection

Bruker APEXII CCD diffractometer 1693 independent reflections
Radiation source: sealed tube 2845 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.035
φ and ω scans θmax = 28.5°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) h = −34→34
Tmin = 0.961, Tmax = 0.992 k = −8→8
11725 measured reflections l = −11→11

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.034 H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.092 w = 1/[σ2(Fo2) + (0.0641P)2 + 0.0998P] where P = (Fo2 + 2Fc2)/3
S = 1.05 (Δ/σ)max < 0.001
1693 reflections Δρmax = 0.24 e Å3
207 parameters Δρmin = −0.18 e Å3
2 restraints Absolute structure: The absolute structure could not be determined with certainty
Primary atom site location: structure-invariant direct methods

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.31793 (6) −0.2140 (2) 0.26571 (17) 0.0391 (3)
O2 0.62483 (6) 0.3924 (3) 0.1855 (2) 0.0454 (4)
H2O 0.6456 (12) 0.485 (6) 0.163 (4) 0.059 (8)*
O3 0.59863 (7) 0.6936 (3) 0.2841 (3) 0.0583 (5)
N1 0.19038 (7) −0.1634 (3) 0.5762 (2) 0.0406 (4)
N2 0.33612 (6) 0.0227 (3) 0.47225 (19) 0.0354 (4)
H2N 0.3278 (9) 0.070 (4) 0.565 (3) 0.037 (6)*
C1 0.23346 (8) −0.0931 (3) 0.5307 (2) 0.0359 (4)
H1 0.2453 0.0463 0.5580 0.043*
C2 0.17334 (8) −0.3618 (4) 0.5349 (3) 0.0432 (5)
H2 0.1435 −0.4116 0.5666 0.052*
C3 0.19787 (9) −0.4971 (4) 0.4473 (3) 0.0430 (5)
H3 0.1846 −0.6346 0.4200 0.052*
C4 0.24257 (8) −0.4253 (4) 0.4005 (2) 0.0386 (4)
H4 0.2598 −0.5133 0.3409 0.046*
C5 0.26131 (7) −0.2192 (3) 0.4442 (2) 0.0301 (4)
C6 0.30789 (7) −0.1368 (3) 0.3864 (2) 0.0301 (4)
C7 0.38118 (7) 0.1288 (3) 0.4401 (2) 0.0307 (4)
C8 0.39174 (8) 0.3389 (3) 0.5049 (2) 0.0340 (4)
H8 0.3691 0.4013 0.5616 0.041*
C9 0.43521 (7) 0.4492 (3) 0.4839 (2) 0.0320 (4)
H9 0.4420 0.5865 0.5270 0.038*
C10 0.47019 (7) 0.3577 (3) 0.3975 (2) 0.0283 (4)
C11 0.51502 (7) 0.4691 (3) 0.3710 (2) 0.0308 (4)
H11 0.5221 0.6080 0.4106 0.037*
C12 0.54815 (7) 0.3749 (3) 0.2878 (2) 0.0311 (4)
C13 0.53849 (8) 0.1624 (3) 0.2294 (2) 0.0350 (4)
H13 0.5618 0.0978 0.1757 0.042*
C14 0.49520 (7) 0.0515 (3) 0.2513 (2) 0.0338 (4)
H14 0.4890 −0.0876 0.2113 0.041*
C15 0.45962 (7) 0.1469 (3) 0.3345 (2) 0.0285 (4)
C16 0.41444 (7) 0.0333 (3) 0.3574 (2) 0.0317 (4)
H16 0.4074 −0.1050 0.3166 0.038*
C17 0.59290 (7) 0.5052 (4) 0.2540 (2) 0.0356 (4)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0371 (7) 0.0478 (8) 0.0382 (6) −0.0070 (6) 0.0207 (5) −0.0074 (6)
O2 0.0352 (8) 0.0457 (9) 0.0632 (9) −0.0036 (7) 0.0274 (7) 0.0042 (7)
O3 0.0498 (10) 0.0452 (10) 0.0917 (13) −0.0172 (8) 0.0405 (9) −0.0099 (8)
N1 0.0283 (8) 0.0505 (10) 0.0483 (9) −0.0018 (7) 0.0197 (7) −0.0032 (8)
N2 0.0312 (8) 0.0458 (10) 0.0353 (8) −0.0097 (7) 0.0200 (6) −0.0055 (7)
C1 0.0283 (9) 0.0382 (10) 0.0452 (10) −0.0026 (8) 0.0166 (8) −0.0032 (8)
C2 0.0282 (9) 0.0566 (14) 0.0485 (11) −0.0062 (9) 0.0166 (8) 0.0062 (10)
C3 0.0375 (11) 0.0382 (11) 0.0551 (12) −0.0114 (8) 0.0142 (9) −0.0017 (9)
C4 0.0340 (10) 0.0398 (11) 0.0450 (10) −0.0033 (7) 0.0156 (8) −0.0053 (8)
C5 0.0232 (8) 0.0363 (10) 0.0334 (8) −0.0031 (7) 0.0120 (6) 0.0016 (7)
C6 0.0252 (8) 0.0366 (9) 0.0318 (8) −0.0011 (7) 0.0132 (6) 0.0023 (7)
C7 0.0255 (9) 0.0385 (11) 0.0308 (8) −0.0060 (7) 0.0123 (6) 0.0013 (7)
C8 0.0332 (9) 0.0383 (10) 0.0348 (9) −0.0001 (8) 0.0169 (7) −0.0021 (7)
C9 0.0334 (10) 0.0317 (9) 0.0343 (8) −0.0025 (7) 0.0149 (7) −0.0030 (7)
C10 0.0267 (8) 0.0318 (9) 0.0285 (7) −0.0003 (7) 0.0109 (6) 0.0021 (6)
C11 0.0281 (9) 0.0324 (9) 0.0337 (8) −0.0057 (7) 0.0109 (7) 0.0004 (7)
C12 0.0244 (8) 0.0351 (10) 0.0357 (9) −0.0022 (7) 0.0110 (7) 0.0052 (7)
C13 0.0295 (9) 0.0368 (10) 0.0429 (10) 0.0014 (7) 0.0171 (8) 0.0008 (8)
C14 0.0318 (10) 0.0324 (9) 0.0414 (10) 0.0003 (7) 0.0171 (8) −0.0022 (7)
C15 0.0266 (9) 0.0331 (9) 0.0289 (7) −0.0031 (7) 0.0124 (6) 0.0009 (6)
C16 0.0296 (9) 0.0336 (9) 0.0346 (9) −0.0057 (7) 0.0130 (7) −0.0013 (7)
C17 0.0256 (9) 0.0445 (12) 0.0392 (9) −0.0064 (8) 0.0126 (7) 0.0031 (8)

Geometric parameters (Å, º)

O1—C6 1.225 (2) C7—C16 1.372 (3)
O2—C17 1.321 (2) C7—C8 1.421 (3)
O2—H2O 0.84 (3) C8—C9 1.365 (3)
O3—C17 1.200 (3) C8—H8 0.9300
N1—C2 1.330 (3) C9—C10 1.416 (2)
N1—C1 1.338 (2) C9—H9 0.9300
N2—C6 1.347 (3) C10—C11 1.414 (2)
N2—C7 1.422 (2) C10—C15 1.420 (2)
N2—H2N 0.92 (3) C11—C12 1.369 (3)
C1—C5 1.391 (2) C11—H11 0.9300
C1—H1 0.9300 C12—C13 1.413 (3)
C2—C3 1.378 (3) C12—C17 1.496 (2)
C2—H2 0.9300 C13—C14 1.365 (3)
C3—C4 1.384 (3) C13—H13 0.9300
C3—H3 0.9300 C14—C15 1.420 (2)
C4—C5 1.389 (3) C14—H14 0.9300
C4—H4 0.9300 C15—C16 1.418 (2)
C5—C6 1.497 (2) C16—H16 0.9300
C17—O2—H2O 104 (2) C7—C8—H8 120.0
C2—N1—C1 118.18 (17) C8—C9—C10 120.97 (17)
C6—N2—C7 126.92 (15) C8—C9—H9 119.5
C6—N2—H2N 120.2 (15) C10—C9—H9 119.5
C7—N2—H2N 112.9 (15) C11—C10—C9 122.43 (17)
N1—C1—C5 122.86 (18) C11—C10—C15 118.87 (15)
N1—C1—H1 118.6 C9—C10—C15 118.69 (15)
C5—C1—H1 118.6 C12—C11—C10 120.79 (18)
N1—C2—C3 123.04 (18) C12—C11—H11 119.6
N1—C2—H2 118.5 C10—C11—H11 119.6
C3—C2—H2 118.5 C11—C12—C13 120.25 (17)
C2—C3—C4 119.0 (2) C11—C12—C17 118.50 (18)
C2—C3—H3 120.5 C13—C12—C17 121.19 (17)
C4—C3—H3 120.5 C14—C13—C12 120.39 (17)
C3—C4—C5 118.79 (18) C14—C13—H13 119.8
C3—C4—H4 120.6 C12—C13—H13 119.8
C5—C4—H4 120.6 C13—C14—C15 120.52 (17)
C4—C5—C1 118.16 (16) C13—C14—H14 119.7
C4—C5—C6 118.87 (16) C15—C14—H14 119.7
C1—C5—C6 122.81 (16) C16—C15—C10 119.90 (15)
O1—C6—N2 123.99 (16) C16—C15—C14 120.97 (17)
O1—C6—C5 119.50 (17) C10—C15—C14 119.13 (15)
N2—C6—C5 116.51 (15) C7—C16—C15 119.58 (18)
C16—C7—C8 120.89 (16) C7—C16—H16 120.2
C16—C7—N2 122.82 (17) C15—C16—H16 120.2
C8—C7—N2 116.24 (16) O3—C17—O2 123.64 (17)
C9—C8—C7 119.96 (16) O3—C17—C12 123.26 (18)
C9—C8—H8 120.0 O2—C17—C12 113.08 (18)
C2—N1—C1—C5 −0.8 (3) C9—C10—C11—C12 179.58 (16)
C1—N1—C2—C3 −0.2 (3) C15—C10—C11—C12 −0.8 (3)
N1—C2—C3—C4 0.5 (3) C10—C11—C12—C13 −1.2 (3)
C2—C3—C4—C5 0.3 (3) C10—C11—C12—C17 176.03 (16)
C3—C4—C5—C1 −1.2 (3) C11—C12—C13—C14 2.0 (3)
C3—C4—C5—C6 −176.77 (19) C17—C12—C13—C14 −175.16 (19)
N1—C1—C5—C4 1.6 (3) C12—C13—C14—C15 −0.7 (3)
N1—C1—C5—C6 176.89 (18) C11—C10—C15—C16 −179.01 (19)
C7—N2—C6—O1 0.2 (3) C9—C10—C15—C16 0.6 (2)
C7—N2—C6—C5 −178.98 (17) C11—C10—C15—C14 2.0 (2)
C4—C5—C6—O1 23.5 (3) C9—C10—C15—C14 −178.39 (19)
C1—C5—C6—O1 −151.76 (19) C13—C14—C15—C16 179.77 (17)
C4—C5—C6—N2 −157.19 (18) C13—C14—C15—C10 −1.2 (3)
C1—C5—C6—N2 27.5 (3) C8—C7—C16—C15 −0.8 (3)
C6—N2—C7—C16 −26.4 (3) N2—C7—C16—C15 −177.94 (16)
C6—N2—C7—C8 156.33 (19) C10—C15—C16—C7 0.2 (3)
C16—C7—C8—C9 0.6 (3) C14—C15—C16—C7 179.18 (17)
N2—C7—C8—C9 177.93 (17) C11—C12—C17—O3 −6.6 (3)
C7—C8—C9—C10 0.2 (3) C13—C12—C17—O3 170.6 (2)
C8—C9—C10—C11 178.80 (17) C11—C12—C17—O2 174.43 (16)
C8—C9—C10—C15 −0.8 (3) C13—C12—C17—O2 −8.4 (3)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
N2—H2N···O1i 0.92 (3) 2.01 (3) 2.926 (2) 170 (2)
O2—H2O···N1ii 0.84 (3) 1.88 (4) 2.708 (2) 170 (3)

Symmetry codes: (i) x, −y, z+1/2; (ii) x+1/2, −y+1/2, z−1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: MW2071).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812024051/mw2071sup1.cif

e-68-o1978-sup1.cif (17.7KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812024051/mw2071Isup2.hkl

e-68-o1978-Isup2.hkl (83.4KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812024051/mw2071Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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