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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Jun 13;68(Pt 7):o2067. doi: 10.1107/S1600536812025305

3-(1-Benzofuran-2-yl)-1H-1,2,4-triazole-5(4H)-thione monohydrate

Hoong-Kun Fun a,*,, Suhana Arshad a, Nithinchandra b, Balakrishna Kalluraya b, Shobhitha Shetty b
PMCID: PMC3393331  PMID: 22807888

Abstract

In the title hydrate, C10H7N3OS·H2O, the essentially planar benzofuran [maximum deviation = 0.006 (1) Å] and 4,5-dihydro-1H-1,2,4-triazole [maximum deviation = 0.007 (1) Å] rings form a dihedral angle of 11.67 (6)°. In the crystal, O—H⋯N, O—H⋯S, N—H⋯O and N—H⋯S hydrogen bonds link the mol­ecules into sheets lying parallel to the bc plane. Aromatic π–π stacking inter­actions [centroid–centroid distances = 3.5078 (8)–3.6113 (8) Å] are also observed.

Related literature  

For background to 1,2,4-triazoles, see: Shujuan et al. (2004); Clemons et al. (2004); Johnston (2002); Wei et al. (2007). For related structures, see: Jing et al. (2012); Fun et al. (2011); Abdel-Aziz et al. (2011). For stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986).graphic file with name e-68-o2067-scheme1.jpg

Experimental  

Crystal data  

  • C10H7N3OS·H2O

  • M r = 235.26

  • Monoclinic, Inline graphic

  • a = 7.1446 (1) Å

  • b = 8.8075 (1) Å

  • c = 17.3274 (2) Å

  • β = 111.942 (1)°

  • V = 1011.36 (2) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.31 mm−1

  • T = 100 K

  • 0.39 × 0.20 × 0.15 mm

Data collection  

  • Bruker SMART APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2009) T min = 0.891, T max = 0.955

  • 19917 measured reflections

  • 4162 independent reflections

  • 3347 reflections with > I > 2σ(I)

  • R int = 0.039

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.042

  • wR(F 2) = 0.108

  • S = 1.07

  • 4162 reflections

  • 153 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.61 e Å−3

  • Δρmin = −0.31 e Å−3

Data collection: APEX2 (Bruker, 2009); cell refinement: SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812025305/hb6837sup1.cif

e-68-o2067-sup1.cif (21.2KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812025305/hb6837Isup2.hkl

e-68-o2067-Isup2.hkl (204KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812025305/hb6837Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O1W—H1OW⋯N2i 0.90 2.05 2.9135 (14) 160
O1W—H2OW⋯S1ii 0.82 2.46 3.2674 (11) 167
N1—H1N1⋯O1W iii 0.90 (2) 1.81 (2) 2.7100 (14) 172.6 (19)
N3—H1N3⋯S1iv 0.846 (18) 2.498 (18) 3.3242 (10) 165.7 (16)

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic.

Acknowledgments

The authors thank Universiti Sains Malaysia (USM) for the Research University Grant (1001/PFIZIK/811160). SA thanks the Malaysian Government and USM for the Academic Staff Training Scheme (ASTS) award. BK is thankful to the Department of Atomic Energy, Board for Research in Nuclear Sciences, Government of India, for financial assistance.

supplementary crystallographic information

Comment

The 1,2,4-triazole nucleus has been incorporated into a wide variety of therapeutically interesting compounds. Several compounds containing 1,2,4-triazole rings are well known as drugs. For example, fluconazole is used as an antimicrobial drug (Shujuan et al., 2004), whereas vorozole, letrozole and anastrozole are non-steroidal drugs used for the treatment of cancer (Clemons et al., 2004) and loreclezole is used as an anticonvulsant (Johnston, 2002). Similarly substituted derivatives of triazole possess comprehensive bioactivities such as antimicrobial, anti-inflammatory, analgesic, antihypertensive, anticonvulsant and antiviral activities (Wei et al., 2007). We now report the synthesis and crystal structure of the title compound.

The asymmetric unit of the title compound, (Fig. 1), consists of one 5-(1-Benzofuran-2-yl)-2,4-dihydro-3H-1,2,4-triazole-3-thione molecule and one water molecule. The benzofuran ring (O1/C3–C10) and the 4,5-dihydro -1H-1,2,4-triazole ring (N1–N3/C1/C2) are essentially planar with maximum deviations of 0.006 (1) Å at atom O1 and 0.007 (1) Å at atom N3, respectively. The dihedral angle between the benzofuran and 4,5-dihydro- 1H-1,2,4-triazole rings is 11.67 (6)°. Bond lengths and angles are within normal ranges and comparable to the related structures (Jing et al., 2012; Fun et al., 2011; Abdel-Aziz et al., 2011).

The crystal packing is shown in Fig. 2. The molecules are linked via O1W—H1OW···N2, O1W—H2OW···S1, N1—H1N1···O1W and N3—H1N3···S1 hydrogen bonds (Table 1) into two-dimensional networks parallel to bc-plane. π–π interactions of Cg1···Cg1 = 3.6113 (8) Å (symmetry code: 1 - x, -y, 1 - z), Cg1···Cg2 = 3.5078 (8) Å (symmetry code: 2 - x, -y, 1 - z), Cg2···Cg3 = 3.5881 (8) Å (symmetry code: 1 - x, -y, 1 - z) and Cg3···Cg2 = 3.6056 (8) Å (symmetry code: 2 - x, -y, 1 - z) further stabilized the crystal structure [Cg1, Cg2 and Cg3 are the centroids of the O1/C3–C5/C10, N1–N3/C1/C2 and C5–C10 rings, respectively].

Experimental

A mixture of 2-(1-benzofuran-2-ylcarbonyl)hydrazinecarbothioamide (0.01 mol) and 10% KOH (10 ml) was refluxed for 3 h. The mixture was cooled to room temperature and then neutralized by the gradual addition of glacial acetic acid. The solid product obtained was collected by filtration, washed with ethanol and dried. It was then recrystallized using ethanol. Yellow blocks of the title compound were obtained by slow evaporation of the ethanolic solution.

Refinement

O– and N-bound H atoms were located from a difference Fourier map. O-bound H atoms were fixed at their found positions (O–H = 0.8961 and 0.8208 Å), with Uiso(H) = 1.5 Ueq(O), whereas N-bound H atoms was refined freely [N–H = 0.844 (18) and 0.90 (2) Å]. The remaining H atoms were positioned geometrically [C–H = 0.93 Å] and refined using a riding model with Uiso(H) = 1.2 Ueq(C). In the final refinement, one outlier (1 1 1) was omitted.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound, showing 50% probability displacement ellipsoids.

Fig. 2.

Fig. 2.

The crystal packing of the title compound, viewed down the b axis. The H atoms not involved in the intermolecular interactions (dashed lines) have been omitted for clarity.

Crystal data

C10H7N3OS·H2O F(000) = 488
Mr = 235.26 Dx = 1.545 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 6273 reflections
a = 7.1446 (1) Å θ = 2.5–33.4°
b = 8.8075 (1) Å µ = 0.31 mm1
c = 17.3274 (2) Å T = 100 K
β = 111.942 (1)° Block, yellow
V = 1011.36 (2) Å3 0.39 × 0.20 × 0.15 mm
Z = 4

Data collection

Bruker SMART APEXII CCD diffractometer 4162 independent reflections
Radiation source: fine-focus sealed tube 3347 reflections with > I > 2σ(I)
Graphite monochromator Rint = 0.039
φ and ω scans θmax = 34.2°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Bruker, 2009) h = −11→11
Tmin = 0.891, Tmax = 0.955 k = −13→13
19917 measured reflections l = −26→27

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.108 H atoms treated by a mixture of independent and constrained refinement
S = 1.07 w = 1/[σ2(Fo2) + (0.0491P)2 + 0.4347P] where P = (Fo2 + 2Fc2)/3
4162 reflections (Δ/σ)max = 0.001
153 parameters Δρmax = 0.61 e Å3
0 restraints Δρmin = −0.31 e Å3

Special details

Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
S1 1.16013 (5) −0.27662 (3) 0.789110 (18) 0.01410 (8)
O1 0.76589 (13) 0.12211 (10) 0.53014 (5) 0.01383 (17)
N1 1.01801 (16) −0.33637 (12) 0.62307 (6) 0.01333 (19)
N2 0.91410 (16) −0.27263 (11) 0.54676 (6) 0.01371 (19)
N3 0.95013 (15) −0.11026 (11) 0.64872 (6) 0.01228 (18)
C1 1.04179 (18) −0.24126 (13) 0.68643 (7) 0.0121 (2)
C2 0.87285 (17) −0.13492 (13) 0.56444 (7) 0.0120 (2)
C3 0.76153 (17) −0.02501 (13) 0.50237 (7) 0.0122 (2)
C4 0.65217 (18) −0.03918 (13) 0.41967 (7) 0.0139 (2)
H4A 0.6284 −0.1277 0.3882 0.017*
C5 0.58061 (17) 0.11092 (14) 0.39077 (7) 0.0134 (2)
C6 0.46309 (19) 0.17499 (15) 0.31360 (8) 0.0169 (2)
H6A 0.4126 0.1157 0.2658 0.020*
C7 0.42492 (19) 0.32943 (16) 0.31110 (8) 0.0185 (2)
H7A 0.3474 0.3741 0.2606 0.022*
C8 0.5000 (2) 0.42034 (15) 0.38265 (9) 0.0193 (2)
H8A 0.4710 0.5236 0.3784 0.023*
C9 0.6168 (2) 0.35953 (14) 0.45977 (8) 0.0175 (2)
H9A 0.6675 0.4189 0.5075 0.021*
C10 0.65281 (18) 0.20498 (13) 0.46092 (7) 0.0128 (2)
O1W 0.12342 (14) 0.13102 (10) 0.11923 (6) 0.01697 (18)
H1OW 0.0827 0.1677 0.0673 0.025*
H2OW 0.0538 0.1810 0.1383 0.025*
H1N1 1.062 (3) −0.433 (2) 0.6261 (12) 0.032 (5)*
H1N3 0.933 (3) −0.032 (2) 0.6736 (11) 0.016 (4)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S1 0.01807 (14) 0.01305 (13) 0.00963 (13) 0.00052 (9) 0.00341 (10) 0.00123 (9)
O1 0.0168 (4) 0.0119 (4) 0.0113 (4) 0.0021 (3) 0.0035 (3) −0.0001 (3)
N1 0.0172 (5) 0.0122 (4) 0.0099 (4) 0.0022 (3) 0.0043 (3) 0.0014 (3)
N2 0.0167 (5) 0.0130 (4) 0.0103 (4) 0.0017 (3) 0.0038 (3) 0.0009 (3)
N3 0.0158 (4) 0.0110 (4) 0.0098 (4) 0.0021 (3) 0.0044 (3) 0.0005 (3)
C1 0.0137 (5) 0.0112 (4) 0.0118 (5) 0.0005 (4) 0.0051 (4) 0.0013 (4)
C2 0.0132 (5) 0.0126 (5) 0.0100 (5) 0.0005 (4) 0.0040 (4) 0.0004 (4)
C3 0.0130 (5) 0.0121 (5) 0.0108 (5) 0.0008 (4) 0.0036 (4) 0.0007 (4)
C4 0.0152 (5) 0.0132 (5) 0.0115 (5) 0.0006 (4) 0.0027 (4) −0.0001 (4)
C5 0.0123 (5) 0.0159 (5) 0.0113 (5) 0.0007 (4) 0.0038 (4) 0.0024 (4)
C6 0.0156 (5) 0.0214 (6) 0.0120 (5) 0.0006 (4) 0.0030 (4) 0.0029 (4)
C7 0.0153 (5) 0.0224 (6) 0.0168 (6) 0.0041 (4) 0.0049 (4) 0.0085 (5)
C8 0.0187 (5) 0.0166 (5) 0.0236 (6) 0.0048 (4) 0.0090 (5) 0.0061 (5)
C9 0.0200 (6) 0.0147 (5) 0.0182 (6) 0.0029 (4) 0.0077 (4) 0.0010 (4)
C10 0.0134 (5) 0.0135 (5) 0.0108 (5) 0.0018 (4) 0.0037 (4) 0.0026 (4)
O1W 0.0225 (4) 0.0144 (4) 0.0136 (4) 0.0006 (3) 0.0064 (3) 0.0009 (3)

Geometric parameters (Å, º)

S1—C1 1.6892 (12) C4—H4A 0.9300
O1—C10 1.3784 (14) C5—C10 1.4003 (17)
O1—C3 1.3785 (14) C5—C6 1.4045 (17)
N1—C1 1.3403 (16) C6—C7 1.3848 (19)
N1—N2 1.3715 (14) C6—H6A 0.9300
N1—H1N1 0.90 (2) C7—C8 1.403 (2)
N2—C2 1.3112 (15) C7—H7A 0.9300
N3—C1 1.3664 (15) C8—C9 1.3914 (18)
N3—C2 1.3718 (15) C8—H8A 0.9300
N3—H1N3 0.844 (18) C9—C10 1.3840 (17)
C2—C3 1.4448 (16) C9—H9A 0.9300
C3—C4 1.3575 (16) O1W—H1OW 0.8961
C4—C5 1.4382 (16) O1W—H2OW 0.8208
C10—O1—C3 105.34 (9) C10—C5—C6 118.94 (11)
C1—N1—N2 113.03 (10) C10—C5—C4 105.90 (10)
C1—N1—H1N1 127.4 (13) C6—C5—C4 135.16 (12)
N2—N1—H1N1 119.6 (13) C7—C6—C5 117.72 (12)
C2—N2—N1 103.96 (10) C7—C6—H6A 121.1
C1—N3—C2 107.80 (10) C5—C6—H6A 121.1
C1—N3—H1N3 125.3 (12) C6—C7—C8 121.81 (12)
C2—N3—H1N3 126.5 (12) C6—C7—H7A 119.1
N1—C1—N3 104.16 (10) C8—C7—H7A 119.1
N1—C1—S1 127.44 (9) C9—C8—C7 121.54 (12)
N3—C1—S1 128.40 (9) C9—C8—H8A 119.2
N2—C2—N3 111.04 (10) C7—C8—H8A 119.2
N2—C2—C3 123.72 (11) C10—C9—C8 115.71 (12)
N3—C2—C3 125.24 (10) C10—C9—H9A 122.1
C4—C3—O1 112.58 (10) C8—C9—H9A 122.1
C4—C3—C2 131.59 (11) O1—C10—C9 125.35 (11)
O1—C3—C2 115.82 (10) O1—C10—C5 110.37 (10)
C3—C4—C5 105.81 (10) C9—C10—C5 124.28 (11)
C3—C4—H4A 127.1 H1OW—O1W—H2OW 101.1
C5—C4—H4A 127.1
C1—N1—N2—C2 −0.29 (14) C2—C3—C4—C5 −178.79 (12)
N2—N1—C1—N3 −0.49 (13) C3—C4—C5—C10 −0.85 (13)
N2—N1—C1—S1 179.94 (9) C3—C4—C5—C6 179.54 (14)
C2—N3—C1—N1 1.06 (13) C10—C5—C6—C7 0.09 (18)
C2—N3—C1—S1 −179.38 (9) C4—C5—C6—C7 179.66 (13)
N1—N2—C2—N3 0.98 (13) C5—C6—C7—C8 0.00 (19)
N1—N2—C2—C3 −179.39 (11) C6—C7—C8—C9 0.0 (2)
C1—N3—C2—N2 −1.34 (14) C7—C8—C9—C10 −0.17 (19)
C1—N3—C2—C3 179.04 (11) C3—O1—C10—C9 −179.75 (12)
C10—O1—C3—C4 0.01 (13) C3—O1—C10—C5 −0.58 (13)
C10—O1—C3—C2 179.45 (10) C8—C9—C10—O1 179.33 (11)
N2—C2—C3—C4 11.6 (2) C8—C9—C10—C5 0.28 (19)
N3—C2—C3—C4 −168.79 (13) C6—C5—C10—O1 −179.42 (10)
N2—C2—C3—O1 −167.68 (11) C4—C5—C10—O1 0.90 (13)
N3—C2—C3—O1 11.90 (17) C6—C5—C10—C9 −0.24 (19)
O1—C3—C4—C5 0.54 (14) C4—C5—C10—C9 −179.92 (12)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
O1W—H1OW···N2i 0.90 2.05 2.9135 (14) 160
O1W—H2OW···S1ii 0.82 2.46 3.2674 (11) 167
N1—H1N1···O1Wiii 0.90 (2) 1.81 (2) 2.7100 (14) 172.6 (19)
N3—H1N3···S1iv 0.846 (18) 2.498 (18) 3.3242 (10) 165.7 (16)

Symmetry codes: (i) −x+1, y+1/2, −z+1/2; (ii) −x+1, −y, −z+1; (iii) x+1, −y−1/2, z+1/2; (iv) −x+2, y+1/2, −z+3/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HB6837).

References

  1. Abdel-Aziz, H. A., Ng, S. W. & Tiekink, E. R. T. (2011). Acta Cryst. E67, o2675. [DOI] [PMC free article] [PubMed]
  2. Bruker (2009). SADABS, APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Clemons, M., Coleman, R. E. & Verma, S. (2004). Cancer Treat. Rev. 30, 325–332. [DOI] [PubMed]
  4. Cosier, J. & Glazer, A. M. (1986). J. Appl. Cryst. 19, 105–107.
  5. Fun, H.-K., Quah, C. K., Nithinchandra, & Kalluraya, B. (2011). Acta Cryst. E67, o2413. [DOI] [PMC free article] [PubMed]
  6. Jing, B., Du, Y.-C. & Zhu, A.-X. (2012). Acta Cryst. E68, o1802. [DOI] [PMC free article] [PubMed]
  7. Johnston, G. A. R. (2002). Curr. Top. Med. Chem. 2, 903–913. [DOI] [PubMed]
  8. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  9. Shujuan, S., Hongxiang, L., Gao, Y., Fan, P., Ma, B., Ge, W. & Wang, X. (2004). J. Pharm. Biomed. Anal. 34, 1117–1124. [DOI] [PubMed]
  10. Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]
  11. Wei, T.-B., Tang, J., Liu, H. & Zhang, Y.-M. (2007). Phosphorus Sulfur Silicon, 182, 1581–1587.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812025305/hb6837sup1.cif

e-68-o2067-sup1.cif (21.2KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812025305/hb6837Isup2.hkl

e-68-o2067-Isup2.hkl (204KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812025305/hb6837Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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