Abstract
The molecule of the title compound, C20H16N2O2, is centrosymmetric, the inversion center being located at the mid-point of the central azine bond. The conformation around the C=N bond is E. The whole molecule (except for the H atoms) is essentially planar, with an r.m.s. deviation of 0.07 Å. In the crystal, molecules are linked head-to-tail by pairs of C—H⋯O hydrogen bonds, forming inversion dimers, and resulting in the formation of chains propagating along [011].
Related literature
For biological properties and practical appplications of diacetylene compounds, see: Zloh et al. (2007 ▶); Buckley & Neumeister (1992 ▶). For the structure of (E,E)-1,2-bis[3-(prop-2-yn-1-yloxy)benzylindene]hydrazine see: Al-Mehana et al. (2011 ▶).
Experimental
Crystal data
C20H16N2O2
M r = 316.35
Triclinic,
a = 4.5700 (3) Å
b = 9.4947 (7) Å
c = 9.8920 (8) Å
α = 67.986 (7)°
β = 77.487 (6)°
γ = 84.132 (6)°
V = 388.37 (5) Å3
Z = 1
Mo Kα radiation
μ = 0.09 mm−1
T = 100 K
0.1 × 0.08 × 0.08 mm
Data collection
Agilent SuperNova Dual (Cu) Atlas diffractometer
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012 ▶) T min = 0.440, T max = 1.000
2956 measured reflections
1710 independent reflections
1508 reflections with I > 2σ(I)
R int = 0.027
Refinement
R[F 2 > 2σ(F 2)] = 0.041
wR(F 2) = 0.122
S = 1.02
1710 reflections
109 parameters
H-atom parameters constrained
Δρmax = 0.23 e Å−3
Δρmin = −0.29 e Å−3
Data collection: CrysAlis PRO (Agilent, 2012 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: pubCIF (Westrip, 2010 ▶).
Supplementary Material
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812025524/su2430sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812025524/su2430Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812025524/su2430Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| C5—H5⋯O1i | 0.93 | 2.52 | 3.4467 (16) | 177 |
Symmetry code: (i)
.
Acknowledgments
We thank the University of Malaya (FRGS grant No. FP001/2010 A) and the Ministry of Higher Education of Malaysia (grant No. UM.C/HIR/MOHE/SC/12) for supporting this study.
supplementary crystallographic information
Comment
Diacetylene compounds are known to have antitumour and antimicrobial activities (Zloh et al., 2007). In addition to their biological activities, diacetylenes are also used as coating and surface treatment agents and as inner cladding material for silica fibre-optic cores (Buckley & Neumeister, 1992). A recent study detailed the crystal structure of (E,E)-1,2-Bis[4-(prop-2-yn-1-yloxy)benzylindene]hydrazine (Al-Mehana et al., 2011). Herein we report on the synthesis and crystal structure of the 3-substituted isomer of this diacetylene compound.
Like the above mentioned compound, the title compound, Fig. 1, is also centrosymmetric around the central azine bond [N1—N1i = 1.415 (1) Å; Symmetry code: (i) -x+2, -y+1, -z+2], with an E conformation about the N1═C10 bond [1.2810 (18) Å].
The title compound differs from the 4-substituted isomer (Al-Mehana et al., 2011) as it adopts a different type of C—H···O interaction in its crystal packing. Here, one of the aromatic H atoms is a hydrogen bond donor to the adjacent phenoxy O atom resulting in the formation of an infinite polymeric chain propagating along [011] (Table 1 and Fig. 2).
Experimental
3,3'-(E, E)-hydrazine-1,2-diylidene bis(methan-1-yl-1-ylidene)diphenol (L1) was prepared by stirring 3-hydroxybenzaldehyde (3 g, 24.5 mmol), hydrazine sulfate (1.65 g, 12.6 mmol) and 1.5 ml of concentrated ammonium solution in a mixture of ethanol and water (20 ml) for 3 h. The product was obtained as a yellow crystalline solid, m.p. 487 - 488 K. A mixture of the diphenol, L1 (2 g, 8.3 mmol) and anhydrous potassium carbonate (1.84 g, 8.6 mmol) in 20 ml of dry acetone was stirred for 30 minutes. Then an excess of propargyl bromide (2.28 g, 19.2 mmol) was added drop wise and the resulting mixture was left under reflux for 48 h. The solvent was then evaporated under reduced pressure. The product was extracted with 100 ml of diethyl ether. The organic layer was washed with brine and dried with MgSO4. A yellow amorphous solid was obtained upon slow evaporation of the ethereal solution and was recrystallized with a 1:1 ethyl acetate-methanol mixture, to yield pure yellow block-like crystals of the title compound [M.p. 401 - 403 K].
Refinement
Hydrogen atoms were included in calculated positions and treated as riding atoms: C–H 0.93 Å (CH) and 0.97 Å (CH2) with Uiso(H) = 1.2Ueq(C).
Figures
Fig. 1.
The molecular structure of the title molecule, with the atom numbering. The displacement ellipsoids are drawn at the 50% probability level [symmetry code: (i) -x+2, -y+1, -z+2].
Fig. 2.
A partial view along the a axis of the crystal packing of the title compound, illustrating the formation of the intermolecular chain along [011]. The C—H···O interactions are shown as red lines; see Table 1 for details.
Crystal data
| C20H16N2O2 | Z = 1 |
| Mr = 316.35 | F(000) = 166 |
| Triclinic, P1 | Dx = 1.353 Mg m−3 |
| Hall symbol: -P 1 | Melting point = 401–403 K |
| a = 4.5700 (3) Å | Mo Kα radiation, λ = 0.71073 Å |
| b = 9.4947 (7) Å | Cell parameters from 1636 reflections |
| c = 9.8920 (8) Å | θ = 2.3–29.1° |
| α = 67.986 (7)° | µ = 0.09 mm−1 |
| β = 77.487 (6)° | T = 100 K |
| γ = 84.132 (6)° | Block, colourless |
| V = 388.37 (5) Å3 | 0.1 × 0.08 × 0.08 mm |
Data collection
| Agilent SuperNova Dual (Cu at zero) Atlas diffractometer | 1710 independent reflections |
| Radiation source: SuperNova (Mo) X-ray Source | 1508 reflections with I > 2σ(I) |
| Mirror monochromator | Rint = 0.027 |
| ω scans | θmax = 27.5°, θmin = 2.3° |
| Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012) | h = −5→4 |
| Tmin = 0.440, Tmax = 1.000 | k = −12→12 |
| 2956 measured reflections | l = −12→12 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.041 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.122 | H-atom parameters constrained |
| S = 1.02 | w = 1/[σ2(Fo2) + (0.0756P)2 + 0.0718P] where P = (Fo2 + 2Fc2)/3 |
| 1710 reflections | (Δ/σ)max < 0.001 |
| 109 parameters | Δρmax = 0.23 e Å−3 |
| 0 restraints | Δρmin = −0.29 e Å−3 |
Special details
| Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| O1 | 0.26162 (18) | 0.81143 (9) | 0.53750 (8) | 0.0186 (3) | |
| N1 | 0.9141 (2) | 0.53809 (10) | 0.94457 (10) | 0.0154 (3) | |
| C1 | 0.1926 (3) | 0.64779 (13) | 0.28726 (13) | 0.0223 (3) | |
| C2 | 0.2727 (3) | 0.67068 (13) | 0.38360 (13) | 0.0201 (3) | |
| C3 | 0.3877 (3) | 0.68058 (13) | 0.50670 (13) | 0.0202 (3) | |
| C4 | 0.3322 (2) | 0.82703 (12) | 0.65948 (12) | 0.0150 (3) | |
| C5 | 0.1900 (3) | 0.94943 (13) | 0.69477 (13) | 0.0173 (3) | |
| C6 | 0.2352 (3) | 0.97068 (12) | 0.81942 (13) | 0.0186 (3) | |
| C7 | 0.4213 (3) | 0.87082 (13) | 0.90930 (13) | 0.0176 (3) | |
| C8 | 0.5677 (2) | 0.75107 (12) | 0.87209 (12) | 0.0151 (3) | |
| C9 | 0.5252 (2) | 0.72894 (12) | 0.74544 (12) | 0.0148 (3) | |
| C10 | 0.7639 (2) | 0.65050 (12) | 0.96900 (12) | 0.0150 (3) | |
| H1 | 0.13000 | 0.62990 | 0.21190 | 0.0270* | |
| H3A | 0.33630 | 0.59000 | 0.59440 | 0.0240* | |
| H3B | 0.60440 | 0.68700 | 0.48080 | 0.0240* | |
| H5 | 0.06580 | 1.01620 | 0.63490 | 0.0210* | |
| H6 | 0.14090 | 1.05210 | 0.84350 | 0.0220* | |
| H7 | 0.44750 | 0.88440 | 0.99420 | 0.0210* | |
| H9 | 0.62480 | 0.64970 | 0.71920 | 0.0180* | |
| H10 | 0.78030 | 0.66930 | 1.05280 | 0.0180* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O1 | 0.0223 (5) | 0.0187 (4) | 0.0173 (4) | 0.0091 (3) | −0.0109 (3) | −0.0080 (3) |
| N1 | 0.0141 (5) | 0.0152 (5) | 0.0162 (5) | 0.0017 (4) | −0.0086 (4) | −0.0022 (4) |
| C1 | 0.0254 (6) | 0.0225 (6) | 0.0209 (6) | 0.0061 (5) | −0.0105 (5) | −0.0083 (5) |
| C2 | 0.0206 (6) | 0.0183 (6) | 0.0204 (6) | 0.0069 (4) | −0.0071 (4) | −0.0061 (5) |
| C3 | 0.0218 (6) | 0.0209 (6) | 0.0208 (6) | 0.0085 (5) | −0.0101 (5) | −0.0098 (5) |
| C4 | 0.0146 (5) | 0.0156 (5) | 0.0135 (5) | −0.0005 (4) | −0.0045 (4) | −0.0027 (4) |
| C5 | 0.0166 (6) | 0.0146 (5) | 0.0184 (6) | 0.0037 (4) | −0.0076 (4) | −0.0021 (4) |
| C6 | 0.0205 (6) | 0.0132 (5) | 0.0225 (6) | 0.0049 (4) | −0.0069 (5) | −0.0069 (4) |
| C7 | 0.0194 (6) | 0.0170 (5) | 0.0184 (5) | 0.0014 (4) | −0.0082 (4) | −0.0065 (4) |
| C8 | 0.0126 (5) | 0.0136 (5) | 0.0175 (5) | −0.0001 (4) | −0.0050 (4) | −0.0028 (4) |
| C9 | 0.0142 (5) | 0.0128 (5) | 0.0166 (5) | 0.0026 (4) | −0.0044 (4) | −0.0044 (4) |
| C10 | 0.0150 (5) | 0.0152 (5) | 0.0160 (5) | 0.0000 (4) | −0.0067 (4) | −0.0050 (4) |
Geometric parameters (Å, º)
| O1—C3 | 1.4247 (16) | C8—C9 | 1.4009 (16) |
| O1—C4 | 1.3763 (13) | C8—C10 | 1.4649 (15) |
| N1—C10 | 1.2808 (15) | C1—H1 | 0.9300 |
| N1—N1i | 1.4158 (13) | C3—H3A | 0.9700 |
| C1—C2 | 1.1883 (18) | C3—H3B | 0.9700 |
| C2—C3 | 1.4632 (18) | C5—H5 | 0.9300 |
| C4—C5 | 1.3951 (18) | C6—H6 | 0.9300 |
| C4—C9 | 1.3899 (15) | C7—H7 | 0.9300 |
| C5—C6 | 1.3817 (17) | C9—H9 | 0.9300 |
| C6—C7 | 1.3941 (18) | C10—H10 | 0.9300 |
| C7—C8 | 1.3883 (18) | ||
| C3—O1—C4 | 115.61 (9) | O1—C3—H3A | 110.00 |
| N1i—N1—C10 | 111.29 (9) | O1—C3—H3B | 110.00 |
| C1—C2—C3 | 173.13 (14) | C2—C3—H3A | 110.00 |
| O1—C3—C2 | 109.82 (11) | C2—C3—H3B | 110.00 |
| O1—C4—C5 | 115.01 (10) | H3A—C3—H3B | 108.00 |
| O1—C4—C9 | 124.05 (11) | C4—C5—H5 | 120.00 |
| C5—C4—C9 | 120.93 (11) | C6—C5—H5 | 120.00 |
| C4—C5—C6 | 119.44 (12) | C5—C6—H6 | 120.00 |
| C5—C6—C7 | 120.38 (12) | C7—C6—H6 | 120.00 |
| C6—C7—C8 | 120.04 (11) | C6—C7—H7 | 120.00 |
| C7—C8—C9 | 120.09 (10) | C8—C7—H7 | 120.00 |
| C7—C8—C10 | 117.97 (10) | C4—C9—H9 | 120.00 |
| C9—C8—C10 | 121.94 (10) | C8—C9—H9 | 120.00 |
| C4—C9—C8 | 119.08 (11) | N1—C10—H10 | 118.00 |
| N1—C10—C8 | 123.54 (10) | C8—C10—H10 | 118.00 |
| C2—C1—H1 | 180.00 | ||
| C3—O1—C4—C9 | 3.31 (15) | C4—C5—C6—C7 | 0.0 (2) |
| C4—O1—C3—C2 | 174.74 (10) | C5—C6—C7—C8 | 1.4 (2) |
| C3—O1—C4—C5 | −175.53 (10) | C6—C7—C8—C10 | 179.20 (11) |
| C10—N1—N1i—C10i | 179.98 (10) | C6—C7—C8—C9 | −0.97 (18) |
| N1i—N1—C10—C8 | 179.47 (9) | C7—C8—C9—C4 | −0.85 (16) |
| O1—C4—C5—C6 | 177.00 (11) | C7—C8—C10—N1 | −178.79 (11) |
| C9—C4—C5—C6 | −1.88 (18) | C9—C8—C10—N1 | 1.38 (17) |
| C5—C4—C9—C8 | 2.29 (16) | C10—C8—C9—C4 | 178.97 (10) |
| O1—C4—C9—C8 | −176.49 (10) |
Symmetry code: (i) −x+2, −y+1, −z+2.
Hydrogen-bond geometry (Å, º)
| D—H···A | D—H | H···A | D···A | D—H···A |
| C5—H5···O1ii | 0.93 | 2.52 | 3.4467 (16) | 177 |
Symmetry code: (ii) −x, −y+2, −z+1.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: SU2430).
References
- Agilent (2012). CrysAlis PRO Agilent Technologies, Yarnton, England.
- Al-Mehana, W. N. A., Yahya, R. & Lo, K. M. (2011). Acta Cryst. E67, o2900. [DOI] [PMC free article] [PubMed]
- Barbour, L. J. (2001). J. Supramol. Chem. 1, 189–191.
- Buckley, L. J. & Neumeister, G. C. (1992). J. Smart Mat. Struct. pp. 1–4.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.
- Zloh, M., Bucar, F. & Gibbons, S. (2007). J. Theor. Chem. Acc. 117, 247-252.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812025524/su2430sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812025524/su2430Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812025524/su2430Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


