Skip to main content
Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Jun 20;68(Pt 7):o2133. doi: 10.1107/S1600536812026700

Di-tert-butyl 3,5-dimethyl-1H-pyrrole-2,4-dicarboxyl­ate

Zhao-Po Zhang a, Wei-Na Wu a,*
PMCID: PMC3393944  PMID: 22798809

Abstract

In the title mol­ecule, C16H25NO4, the non-H atoms, except for the two tert-butyl groups, are roughly planar (r.m.s. deviation of the non-H atoms = 0.086 Å). In the crystal, mol­ecules are linked into inversion dimers by pairs of N—H⋯O hydrogen bonds, forming R 2 2(10) ring motifs.

Related literature  

For complexes of Schiff bases containing a pyrrole unit, see: Wu et al. (2003); Wang et al. (2008). For the synthesis of the title compound, see: Sun et al. (2003).graphic file with name e-68-o2133-scheme1.jpg

Experimental  

Crystal data  

  • C16H25NO4

  • M r = 295.37

  • Triclinic, Inline graphic

  • a = 5.8976 (10) Å

  • b = 11.511 (2) Å

  • c = 13.460 (2) Å

  • α = 103.956 (4)°

  • β = 90.078 (3)°

  • γ = 104.804 (3)°

  • V = 855.5 (3) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.08 mm−1

  • T = 296 K

  • 0.21 × 0.19 × 0.16 mm

Data collection  

  • Bruker SMART CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2007) T min = 0.983, T max = 0.987

  • 4496 measured reflections

  • 2989 independent reflections

  • 1704 reflections with I > 2σ(I)

  • R int = 0.023

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.058

  • wR(F 2) = 0.150

  • S = 1.04

  • 2989 reflections

  • 191 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.27 e Å−3

  • Δρmin = −0.21 e Å−3

Data collection: APEX2 (Bruker, 2007); cell refinement: SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812026700/vm2177sup1.cif

e-68-o2133-sup1.cif (19KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812026700/vm2177Isup2.hkl

e-68-o2133-Isup2.hkl (146.7KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812026700/vm2177Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1A⋯O1i 0.873 (17) 2.087 (18) 2.933 (3) 163.2 (12)

Symmetry code: (i) Inline graphic.

Acknowledgments

The authors are grateful for financial support by the Doctoral Foundation of Henan Polytechnic University (B2009–70 648364).

supplementary crystallographic information

Comment

Schiff bases containing pyrrole units have been extensively investigated due to their excellent coordination abilities (Wu et al., 2003; Wang et al., 2008). However, tert-butyl pyrrole-2-carboxylate derivatives are important intermediates to form 2-formyl pyrroles (Sun et al., 2003). As part of our studies on bis(pyrrol-2-yl-methyleneamine) ligands, the crystal structure of the title compound is reported here.

In the title molecule (Fig. 1), except for the two tert-butyl groups, the non-hydrogen atoms are situated in a fair plane (r.m.s. deviation of the non-hydrogen atoms being 0.2542 Å). In the crystal, the molecules are linked into a centrosymmetric dimer by two intermolecular N—H···O hydrogen bonds (Table 1), forming a R22(10) ring motif (Fig. 2).

Experimental

The di-tert-butyl 3,5-dimethyl-1H-pyrrole-2,4-dicarboxylate was prepared by a Knorr-type reaction from the condensation of tert-butyl acetoacetate and tert-butyl oximinoacetoacetate according to literature (Sun et al., 2003).

Refinement

All methyl H atoms were positioned geometrically (C—H = 0.96 Å) and refined as riding with Uiso(H) = 1.5Ueq. Atom H1A was positioned geometrically with the N1—H1A distance free to refine and Uiso(H1A) = 1.2Ueq(N1).

Figures

Fig. 1.

Fig. 1.

The molecular structure shown with 30% probability displacement ellipsoids.

Fig. 2.

Fig. 2.

The dimer of the title compounds formed via N—H···O hydrogen bonds shown as dashed lines. Unlabelled atoms are related with the labelled ones by symmetry operation -1 - x, -y, -z.

Crystal data

C16H25NO4 Z = 2
Mr = 295.37 F(000) = 320
Triclinic, P1 Dx = 1.147 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 5.8976 (10) Å Cell parameters from 771 reflections
b = 11.511 (2) Å θ = 3.2–20.5°
c = 13.460 (2) Å µ = 0.08 mm1
α = 103.956 (4)° T = 296 K
β = 90.078 (3)° Plate, colorless
γ = 104.804 (3)° 0.21 × 0.19 × 0.16 mm
V = 855.5 (3) Å3

Data collection

Bruker SMART CCD diffractometer 2989 independent reflections
Radiation source: fine-focus sealed tube 1704 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.023
φ and ω scans θmax = 25.0°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2007) h = −6→6
Tmin = 0.983, Tmax = 0.987 k = −13→13
4496 measured reflections l = −16→13

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.058 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.150 H atoms treated by a mixture of independent and constrained refinement
S = 1.04 w = 1/[σ2(Fo2) + (0.0557P)2 + 0.202P] where P = (Fo2 + 2Fc2)/3
2989 reflections (Δ/σ)max < 0.001
191 parameters Δρmax = 0.27 e Å3
0 restraints Δρmin = −0.21 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 −0.2311 (4) 0.1845 (2) −0.08222 (19) 0.0471 (7)
C2 −0.1610 (4) 0.2579 (2) −0.14921 (19) 0.0476 (7)
C3 −0.3401 (5) 0.2180 (2) −0.23018 (19) 0.0478 (7)
C4 −0.5147 (5) 0.1215 (2) −0.2090 (2) 0.0484 (7)
C5 0.0637 (5) 0.3586 (3) −0.1403 (2) 0.0673 (9)
H5A 0.1527 0.3670 −0.0781 0.101*
H5B 0.0276 0.4356 −0.1393 0.101*
H5C 0.1540 0.3375 −0.1980 0.101*
C6 −0.7463 (5) 0.0472 (3) −0.2626 (2) 0.0691 (9)
H6A −0.8212 −0.0121 −0.2255 0.104*
H6B −0.7229 0.0045 −0.3308 0.104*
H6C −0.8440 0.1015 −0.2660 0.104*
C7 −0.1316 (4) 0.1787 (2) 0.0145 (2) 0.0479 (7)
C8 0.1962 (5) 0.2870 (3) 0.1451 (2) 0.0537 (7)
C9 0.2769 (5) 0.1727 (3) 0.1469 (2) 0.0726 (9)
H9A 0.3721 0.1553 0.0903 0.109*
H9B 0.1424 0.1032 0.1415 0.109*
H9C 0.3674 0.1870 0.2101 0.109*
C10 0.0441 (5) 0.3201 (3) 0.2315 (2) 0.0693 (9)
H10A −0.0005 0.3935 0.2274 0.104*
H10B 0.1301 0.3351 0.2960 0.104*
H10C −0.0944 0.2529 0.2263 0.104*
C11 0.4029 (6) 0.3960 (3) 0.1429 (3) 0.0819 (10)
H11A 0.3469 0.4670 0.1417 0.123*
H11B 0.4861 0.3754 0.0827 0.123*
H11C 0.5067 0.4147 0.2030 0.123*
C12 −0.3408 (5) 0.2728 (3) −0.3174 (2) 0.0549 (7)
C13 −0.5671 (6) 0.2464 (3) −0.4787 (2) 0.0673 (9)
C14 −0.3574 (7) 0.2685 (4) −0.5428 (3) 0.1043 (13)
H14A −0.3103 0.1930 −0.5657 0.156*
H14B −0.2298 0.3317 −0.5022 0.156*
H14C −0.3990 0.2948 −0.6012 0.156*
C15 −0.6498 (7) 0.3616 (4) −0.4426 (3) 0.1023 (13)
H15A −0.7827 0.3448 −0.4023 0.153*
H15B −0.6943 0.3873 −0.5009 0.153*
H15C −0.5252 0.4265 −0.4017 0.153*
C16 −0.7630 (8) 0.1391 (4) −0.5360 (3) 0.1329 (19)
H16A −0.8932 0.1267 −0.4935 0.199*
H16B −0.7085 0.0654 −0.5536 0.199*
H16C −0.8123 0.1567 −0.5976 0.199*
N1 −0.4459 (4) 0.10303 (19) −0.12068 (16) 0.0492 (6)
H1A −0.526 (2) 0.0471 (17) −0.0913 (9) 0.059*
O1 −0.2209 (3) 0.10146 (17) 0.06093 (14) 0.0565 (5)
O2 0.0654 (3) 0.26788 (16) 0.04613 (13) 0.0594 (6)
O3 −0.2064 (4) 0.3672 (2) −0.32547 (15) 0.0789 (7)
O4 −0.5120 (4) 0.20430 (18) −0.38930 (14) 0.0728 (7)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.0392 (15) 0.0471 (16) 0.0494 (16) 0.0026 (13) −0.0034 (13) 0.0109 (13)
C2 0.0431 (16) 0.0459 (16) 0.0501 (16) 0.0040 (13) 0.0011 (13) 0.0133 (13)
C3 0.0487 (17) 0.0433 (15) 0.0484 (16) 0.0059 (13) −0.0017 (13) 0.0123 (12)
C4 0.0481 (17) 0.0447 (16) 0.0490 (16) 0.0062 (13) −0.0060 (13) 0.0117 (13)
C5 0.0580 (19) 0.069 (2) 0.066 (2) −0.0086 (16) −0.0064 (16) 0.0271 (16)
C6 0.062 (2) 0.065 (2) 0.068 (2) −0.0084 (16) −0.0152 (16) 0.0191 (16)
C7 0.0364 (15) 0.0501 (16) 0.0511 (16) 0.0022 (13) −0.0015 (13) 0.0109 (14)
C8 0.0435 (16) 0.0598 (18) 0.0503 (17) 0.0019 (14) −0.0090 (13) 0.0121 (14)
C9 0.056 (2) 0.088 (2) 0.078 (2) 0.0266 (18) −0.0060 (16) 0.0190 (18)
C10 0.068 (2) 0.070 (2) 0.064 (2) 0.0160 (17) 0.0038 (17) 0.0075 (16)
C11 0.058 (2) 0.089 (2) 0.079 (2) −0.0151 (18) −0.0104 (17) 0.0205 (18)
C12 0.0551 (18) 0.0514 (18) 0.0541 (17) 0.0048 (15) −0.0033 (15) 0.0152 (14)
C13 0.067 (2) 0.075 (2) 0.0572 (19) 0.0036 (17) −0.0113 (17) 0.0290 (16)
C14 0.103 (3) 0.154 (4) 0.063 (2) 0.040 (3) 0.009 (2) 0.033 (2)
C15 0.105 (3) 0.133 (4) 0.092 (3) 0.050 (3) 0.004 (2) 0.050 (2)
C16 0.137 (4) 0.125 (3) 0.107 (3) −0.041 (3) −0.073 (3) 0.053 (3)
N1 0.0457 (14) 0.0490 (13) 0.0491 (13) 0.0005 (11) −0.0029 (11) 0.0181 (11)
O1 0.0495 (12) 0.0582 (12) 0.0572 (12) −0.0030 (9) −0.0060 (9) 0.0240 (10)
O2 0.0486 (12) 0.0636 (13) 0.0566 (12) −0.0083 (10) −0.0105 (9) 0.0220 (9)
O3 0.0853 (16) 0.0726 (15) 0.0676 (14) −0.0133 (13) −0.0132 (12) 0.0327 (11)
O4 0.0795 (15) 0.0684 (14) 0.0620 (13) −0.0075 (11) −0.0240 (11) 0.0292 (11)

Geometric parameters (Å, º)

C1—C2 1.375 (3) C9—H9C 0.9600
C1—N1 1.381 (3) C10—H10A 0.9600
C1—C7 1.450 (4) C10—H10B 0.9600
C2—C3 1.422 (3) C10—H10C 0.9600
C2—C5 1.504 (3) C11—H11A 0.9600
C3—C4 1.394 (3) C11—H11B 0.9600
C3—C12 1.462 (4) C11—H11C 0.9600
C4—N1 1.337 (3) C12—O3 1.200 (3)
C4—C6 1.490 (3) C12—O4 1.342 (3)
C5—H5A 0.9600 C13—O4 1.466 (3)
C5—H5B 0.9600 C13—C15 1.502 (5)
C5—H5C 0.9600 C13—C16 1.505 (4)
C6—H6A 0.9600 C13—C14 1.512 (5)
C6—H6B 0.9600 C14—H14A 0.9600
C6—H6C 0.9600 C14—H14B 0.9600
C7—O1 1.220 (3) C14—H14C 0.9600
C7—O2 1.328 (3) C15—H15A 0.9600
C8—O2 1.479 (3) C15—H15B 0.9600
C8—C10 1.506 (4) C15—H15C 0.9600
C8—C9 1.514 (4) C16—H16A 0.9600
C8—C11 1.516 (4) C16—H16B 0.9600
C9—H9A 0.9600 C16—H16C 0.9600
C9—H9B 0.9600 N1—H1A 0.873 (17)
C2—C1—N1 107.7 (2) C8—C10—H10C 109.5
C2—C1—C7 134.1 (2) H10A—C10—H10C 109.5
N1—C1—C7 118.2 (2) H10B—C10—H10C 109.5
C1—C2—C3 106.5 (2) C8—C11—H11A 109.5
C1—C2—C5 126.9 (2) C8—C11—H11B 109.5
C3—C2—C5 126.6 (2) H11A—C11—H11B 109.5
C4—C3—C2 107.8 (2) C8—C11—H11C 109.5
C4—C3—C12 127.0 (2) H11A—C11—H11C 109.5
C2—C3—C12 125.2 (2) H11B—C11—H11C 109.5
N1—C4—C3 107.2 (2) O3—C12—O4 123.1 (3)
N1—C4—C6 120.3 (2) O3—C12—C3 125.1 (3)
C3—C4—C6 132.5 (2) O4—C12—C3 111.8 (2)
C2—C5—H5A 109.5 O4—C13—C15 108.9 (3)
C2—C5—H5B 109.5 O4—C13—C16 102.4 (2)
H5A—C5—H5B 109.5 C15—C13—C16 111.3 (3)
C2—C5—H5C 109.5 O4—C13—C14 111.3 (3)
H5A—C5—H5C 109.5 C15—C13—C14 111.4 (3)
H5B—C5—H5C 109.5 C16—C13—C14 111.2 (3)
C4—C6—H6A 109.5 C13—C14—H14A 109.5
C4—C6—H6B 109.5 C13—C14—H14B 109.5
H6A—C6—H6B 109.5 H14A—C14—H14B 109.5
C4—C6—H6C 109.5 C13—C14—H14C 109.5
H6A—C6—H6C 109.5 H14A—C14—H14C 109.5
H6B—C6—H6C 109.5 H14B—C14—H14C 109.5
O1—C7—O2 124.6 (2) C13—C15—H15A 109.5
O1—C7—C1 123.5 (2) C13—C15—H15B 109.5
O2—C7—C1 111.9 (2) H15A—C15—H15B 109.5
O2—C8—C10 109.2 (2) C13—C15—H15C 109.5
O2—C8—C9 109.9 (2) H15A—C15—H15C 109.5
C10—C8—C9 112.8 (2) H15B—C15—H15C 109.5
O2—C8—C11 101.8 (2) C13—C16—H16A 109.5
C10—C8—C11 111.4 (2) C13—C16—H16B 109.5
C9—C8—C11 111.2 (3) H16A—C16—H16B 109.5
C8—C9—H9A 109.5 C13—C16—H16C 109.5
C8—C9—H9B 109.5 H16A—C16—H16C 109.5
H9A—C9—H9B 109.5 H16B—C16—H16C 109.5
C8—C9—H9C 109.5 C4—N1—C1 110.9 (2)
H9A—C9—H9C 109.5 C4—N1—H1A 124.5 (8)
H9B—C9—H9C 109.5 C1—N1—H1A 124.6 (8)
C8—C10—H10A 109.5 C7—O2—C8 122.9 (2)
C8—C10—H10B 109.5 C12—O4—C13 122.3 (2)
H10A—C10—H10B 109.5
N1—C1—C2—C3 −0.3 (3) C2—C3—C12—O3 −9.7 (5)
C7—C1—C2—C3 −179.0 (3) C4—C3—C12—O4 −12.0 (4)
N1—C1—C2—C5 −178.9 (2) C2—C3—C12—O4 170.3 (2)
C7—C1—C2—C5 2.5 (5) C3—C4—N1—C1 0.2 (3)
C1—C2—C3—C4 0.4 (3) C6—C4—N1—C1 −177.7 (2)
C5—C2—C3—C4 179.0 (3) C2—C1—N1—C4 0.1 (3)
C1—C2—C3—C12 178.5 (3) C7—C1—N1—C4 179.0 (2)
C5—C2—C3—C12 −3.0 (4) O1—C7—O2—C8 −2.5 (4)
C2—C3—C4—N1 −0.3 (3) C1—C7—O2—C8 176.8 (2)
C12—C3—C4—N1 −178.3 (3) C10—C8—O2—C7 −63.0 (3)
C2—C3—C4—C6 177.1 (3) C9—C8—O2—C7 61.2 (3)
C12—C3—C4—C6 −0.9 (5) C11—C8—O2—C7 179.2 (2)
C2—C1—C7—O1 −177.3 (3) O3—C12—O4—C13 −7.2 (5)
N1—C1—C7—O1 4.1 (4) C3—C12—O4—C13 172.8 (3)
C2—C1—C7—O2 3.3 (4) C15—C13—O4—C12 −63.2 (4)
N1—C1—C7—O2 −175.2 (2) C16—C13—O4—C12 178.9 (3)
C4—C3—C12—O3 168.0 (3) C14—C13—O4—C12 60.0 (4)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
N1—H1A···O1i 0.873 (17) 2.087 (18) 2.933 (3) 163.2 (12)

Symmetry code: (i) −x−1, −y, −z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: VM2177).

References

  1. Bruker (2007). APEX2, SAINT and SADABS Bruker AXS Inc., Madison, Wisconsin, USA .
  2. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  3. Sun, L., Liang, C., Shirazian, S., Zhou, Y., Miller, T., Cui, J., Fukuda, J. Y., Chu, J.-Y., Nematalla, A., Wang, X., Chen, H., Sistla, A., Luu, T. C., Tang, F., Wei, J. & Tang, C. (2003). J. Med. Chem. 46, 1116–1119. [DOI] [PubMed]
  4. Wang, Y., Yang, Z.-Y. & Chen, Z.-N. (2008). Bioorg. Med. Chem. Lett. 18, 298–303. [DOI] [PubMed]
  5. Wu, Z. K., Chen, Q. Q., Xiong, S. X., Xin, B., Zhao, Z. W., Jiang, L. J. & Ma, J. S. (2003). Angew. Chem. Int. Ed. 42, 3271–3274. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812026700/vm2177sup1.cif

e-68-o2133-sup1.cif (19KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812026700/vm2177Isup2.hkl

e-68-o2133-Isup2.hkl (146.7KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812026700/vm2177Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

RESOURCES